Wall clock time and date at job start Mon Mar 30 2020 06:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.47284 * 2 1 4 4 O 1.42898 * 109.46681 * 240.00160 * 2 1 3 5 5 C 1.50697 * 109.47051 * 120.00290 * 2 1 3 6 6 C 1.38280 * 119.97205 * 85.01952 * 5 2 1 7 7 C 1.38250 * 120.10833 * 180.02562 * 6 5 2 8 8 C 1.38159 * 120.05742 * 359.68104 * 7 6 5 9 9 C 1.38710 * 119.94311 * 0.57011 * 8 7 6 10 10 O 1.35900 * 120.05544 * 179.72143 * 9 8 7 11 11 C 1.42898 * 117.00172 * 359.72769 * 10 9 8 12 12 C 1.52997 * 109.47319 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00117 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47306 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47019 * 120.00329 * 18 16 14 21 21 H 1.48498 * 109.47326 * 240.00104 * 18 16 14 22 22 C 1.38129 * 119.97079 * 264.99560 * 5 2 1 23 23 H 1.09004 * 109.46674 * 300.00167 * 1 2 3 24 24 H 1.08998 * 109.46888 * 59.99468 * 1 2 3 25 25 H 1.08991 * 109.47486 * 179.97438 * 1 2 3 26 26 H 0.96696 * 114.00151 * 299.99798 * 4 2 1 27 27 H 1.08000 * 119.95034 * 0.02562 * 6 5 2 28 28 H 1.08006 * 119.97154 * 179.97438 * 7 6 5 29 29 H 1.08006 * 120.03137 * 180.29323 * 8 7 6 30 30 H 1.09002 * 109.47259 * 300.00149 * 11 10 9 31 31 H 1.09001 * 109.47074 * 60.00171 * 11 10 9 32 32 H 1.09002 * 109.47153 * 300.00307 * 12 11 10 33 33 H 1.08998 * 109.47533 * 59.99936 * 12 11 10 34 34 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 35 35 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 36 36 H 0.96996 * 119.99885 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.02419 * 359.97438 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0324 -0.7105 1.2304 6 6 2.1646 -2.0869 1.2277 7 6 2.6246 -2.7416 2.3551 8 6 2.9597 -2.0212 3.4853 9 6 2.8230 -0.6408 3.4923 10 8 3.1466 0.0696 4.6047 11 6 3.6158 -0.6705 5.7335 12 6 3.9280 0.2923 6.8808 13 6 4.4309 -0.5000 8.0891 14 6 4.7390 0.4485 9.2189 15 1 4.5906 1.5102 9.0884 16 6 5.2095 -0.0393 10.4196 17 7 5.3898 -1.3323 10.5788 18 14 5.5921 1.1365 11.8199 19 1 5.3068 2.5287 11.3892 20 1 4.7478 0.7992 12.9941 21 1 7.0252 1.0161 12.1898 22 6 2.3608 0.0139 2.3597 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7210 -1.5951 -1.2329 27 1 1.9081 -2.6515 0.3435 28 1 2.7266 -3.8169 2.3507 29 1 3.3236 -2.5326 4.3643 30 1 2.8478 -1.3764 6.0499 31 1 4.5197 -1.2152 5.4606 32 1 4.6961 0.9979 6.5641 33 1 3.0244 0.8374 7.1538 34 1 3.6631 -1.2058 8.4059 35 1 5.3347 -1.0446 7.8158 36 1 5.7212 -1.6754 11.4234 37 1 2.2581 1.0890 2.3610 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:50 Heat of formation + Delta-G solvation = -108.571713 kcal Electronic energy + Delta-G solvation = -17273.071727 eV Core-core repulsion = 14399.935033 eV Total energy + Delta-G solvation = -2873.136694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.25910 -39.47409 -37.43620 -35.96832 -33.73933 -33.02945 -31.10100 -30.02739 -28.75083 -25.65150 -24.45686 -23.62932 -22.24020 -21.58807 -19.25785 -18.53104 -17.38641 -17.21787 -17.09656 -16.87883 -16.49011 -15.84334 -15.31328 -15.06341 -14.61725 -14.52797 -14.07173 -14.05493 -13.73648 -13.24390 -13.01647 -12.84622 -12.77111 -12.52166 -12.46962 -12.22124 -12.05703 -11.73163 -11.58996 -11.49188 -11.25135 -11.12046 -10.59338 -9.84171 -9.18685 -8.24100 -6.35079 0.27667 0.45420 1.39834 1.40123 1.53724 2.17958 2.41487 2.72258 3.09822 3.52745 3.63047 3.83403 4.00559 4.06451 4.10342 4.15685 4.23993 4.34820 4.41397 4.47855 4.59599 4.78774 4.81855 4.90445 4.97774 5.05123 5.07529 5.24792 5.34222 5.45357 5.46330 5.54226 5.62763 5.78261 5.80670 6.17893 6.44243 6.79224 6.80404 7.34382 8.88181 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.057437 B = 0.003160 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.377406 B = 8857.828086 C = 9182.645262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.148 3.852 3 H 0.107 0.893 4 O -0.569 6.569 5 C -0.081 4.081 6 C -0.154 4.154 7 C -0.077 4.077 8 C -0.226 4.226 9 C 0.110 3.890 10 O -0.332 6.332 11 C 0.072 3.928 12 C -0.097 4.097 13 C 0.029 3.971 14 C -0.545 4.545 15 H 0.060 0.940 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.967 3.033 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.163 4.163 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.389 0.611 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.127 0.873 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.000 1.000 35 H -0.001 1.001 36 H 0.265 0.735 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.401 -1.610 -21.532 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.089 3.911 3 H 0.124 0.876 4 O -0.377 6.377 5 C -0.081 4.081 6 C -0.172 4.172 7 C -0.095 4.095 8 C -0.245 4.245 9 C 0.065 3.935 10 O -0.247 6.247 11 C -0.003 4.003 12 C -0.134 4.134 13 C -0.008 4.008 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.182 4.182 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.239 0.761 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.145 0.855 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.074 0.926 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.086 -0.952 -21.486 23.348 hybrid contribution 0.230 -0.412 1.491 1.564 sum -8.857 -1.364 -19.995 21.911 Atomic orbital electron populations 1.22430 0.93765 1.03657 1.03345 1.20783 0.94088 0.95693 0.80538 0.87566 1.86607 1.77714 1.30529 1.42862 1.20579 0.97438 0.94764 0.95332 1.21094 1.03094 0.93521 0.99522 1.21244 0.95587 1.01010 0.91658 1.21543 1.08184 0.93021 1.01732 1.19389 0.95652 0.91203 0.87239 1.86038 1.79948 1.37422 1.21250 1.22860 0.98538 0.94941 0.83919 1.21436 1.00945 0.97998 0.93044 1.18909 0.94974 0.95034 0.91913 1.21656 1.43963 0.94193 0.98511 0.92160 1.25970 0.95195 0.96934 1.01611 1.70087 1.46810 1.13926 1.26328 0.85367 0.77943 0.79114 0.78441 1.18694 1.20217 1.20246 1.20400 1.05424 1.00853 0.91500 0.91493 0.90476 0.91149 0.76091 0.82828 0.83175 0.85491 0.91840 0.91984 0.92299 0.92205 0.98161 0.98226 0.92607 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.52 71.98 0.69 -1.44 16 2 C 0.15 2.35 3.83 29.85 0.11 2.47 16 3 H 0.11 1.73 8.05 -2.38 -0.02 1.71 16 4 O -0.57 -8.98 13.13 -148.98 -1.96 -10.94 16 5 C -0.08 -1.64 5.00 -19.88 -0.10 -1.74 16 6 C -0.15 -2.76 9.32 22.28 0.21 -2.55 16 7 C -0.08 -1.60 10.04 22.25 0.22 -1.37 16 8 C -0.23 -6.11 9.04 22.36 0.20 -5.91 16 9 C 0.11 3.36 6.69 22.50 0.15 3.51 16 10 O -0.33 -11.75 10.14 -92.43 -0.94 -12.69 16 11 C 0.07 2.61 4.74 71.98 0.34 2.96 16 12 C -0.10 -4.12 5.52 30.59 0.17 -3.95 16 13 C 0.03 1.52 4.97 29.84 0.15 1.66 16 14 C -0.55 -31.19 9.11 25.60 0.23 -30.96 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 18 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 C -0.16 -4.21 9.62 22.37 0.22 -3.99 16 23 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.39 3.16 7.39 -74.06 -0.55 2.61 16 27 H 0.15 1.58 6.61 -2.91 -0.02 1.56 16 28 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.13 3.43 6.30 -2.91 -0.02 3.42 16 30 H 0.06 2.20 7.67 -2.39 -0.02 2.19 16 31 H 0.06 2.17 7.65 -2.39 -0.02 2.16 16 32 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -67.33 313.11 2.97 -64.36 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.50 Total: 9.79 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 3.05 Total: -40.81 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.28 Total: -55.95 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -2.89 Total: -23.63 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.33 2.97 -64.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.215 kcal (2) G-P(sol) polarization free energy of solvation -67.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds