Wall clock time and date at job start Mon Mar 30 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46720 * 2 1 4 4 O 1.42894 * 109.47407 * 120.00368 * 2 1 3 5 5 C 1.50702 * 109.46902 * 240.00758 * 2 1 3 6 6 C 1.38294 * 119.97003 * 279.97005 * 5 2 1 7 7 C 1.38232 * 120.11124 * 180.02562 * 6 5 2 8 8 C 1.38173 * 120.05823 * 359.97438 * 7 6 5 9 9 C 1.38705 * 119.94203 * 359.76822 * 8 7 6 10 10 O 1.35904 * 120.05924 * 180.25551 * 9 8 7 11 11 C 1.42903 * 116.99671 * 0.25297 * 10 9 8 12 12 C 1.52991 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47383 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47453 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99915 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99804 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47168 * 60.00582 * 18 16 14 20 20 H 1.48507 * 109.47261 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47431 * 300.00361 * 18 16 14 22 22 C 1.38122 * 119.97497 * 100.00062 * 5 2 1 23 23 H 1.09005 * 109.46720 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46976 * 299.99688 * 1 2 3 25 25 H 1.08997 * 109.47186 * 59.99882 * 1 2 3 26 26 H 0.96700 * 114.00488 * 59.99834 * 4 2 1 27 27 H 1.08003 * 119.94130 * 0.05120 * 6 5 2 28 28 H 1.08008 * 119.97134 * 180.02562 * 7 6 5 29 29 H 1.07997 * 120.02588 * 180.02562 * 8 7 6 30 30 H 1.08996 * 109.46945 * 300.00498 * 11 10 9 31 31 H 1.09006 * 109.46787 * 59.99781 * 11 10 9 32 32 H 1.08996 * 109.47418 * 300.00504 * 12 11 10 33 33 H 1.09006 * 109.47277 * 60.00347 * 12 11 10 34 34 H 1.09004 * 109.47108 * 300.00327 * 13 12 11 35 35 H 1.09006 * 109.46629 * 59.99953 * 13 12 11 36 36 H 0.97002 * 119.99731 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.02504 * 359.97056 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0323 -0.7103 -1.2306 6 6 2.0670 -2.0923 -1.2648 7 6 2.5277 -2.7468 -2.3918 8 6 2.9542 -2.0213 -3.4876 9 6 2.9154 -0.6351 -3.4579 10 8 3.3296 0.0808 -4.5363 11 6 3.7877 -0.6597 -5.6694 12 6 4.2083 0.3096 -6.7758 13 6 4.6994 -0.4831 -7.9888 14 6 5.1143 0.4716 -9.0785 15 1 5.0359 1.5373 -8.9214 16 6 5.5949 -0.0153 -10.2755 17 7 5.6908 -1.3129 -10.4666 18 14 6.1098 1.1682 -11.6259 19 1 7.2036 2.0410 -11.1287 20 1 6.5864 0.3988 -12.8033 21 1 4.9485 2.0056 -12.0196 22 6 2.4582 0.0196 -2.3231 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.7211 -1.5953 1.2328 27 1 1.7332 -2.6613 -0.4095 28 1 2.5534 -3.8263 -2.4162 29 1 3.3137 -2.5332 -4.3680 30 1 4.6402 -1.2746 -5.3810 31 1 2.9845 -1.3001 -6.0338 32 1 3.3555 0.9242 -7.0640 33 1 5.0114 0.9504 -6.4117 34 1 5.5524 -1.0974 -7.7003 35 1 3.8966 -1.1242 -8.3531 36 1 6.0286 -1.6555 -11.3089 37 1 2.4309 1.0990 -2.2959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578736.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:53 Heat of formation + Delta-G solvation = -89.110824 kcal Electronic energy + Delta-G solvation = -17269.561160 eV Core-core repulsion = 14397.268353 eV Total energy + Delta-G solvation = -2872.292807 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22562 -38.47370 -36.51558 -34.04858 -32.21457 -31.83599 -30.06936 -29.17609 -26.96281 -24.34329 -23.11133 -22.66857 -20.87361 -20.19676 -18.23990 -16.63703 -16.31561 -16.14863 -15.88102 -15.80895 -14.94323 -14.54320 -14.43973 -13.70886 -13.64706 -13.21870 -13.12204 -12.38680 -12.29628 -12.07521 -11.96119 -11.79460 -11.47580 -11.09913 -10.99319 -10.65851 -10.63405 -10.53984 -10.33297 -9.79337 -9.55567 -9.20186 -8.92452 -8.40730 -8.13682 -6.06033 -4.08876 1.21417 1.42470 3.31275 3.35291 3.36871 3.44365 3.65621 4.17417 4.41344 4.46453 4.70754 4.82840 4.92127 5.02702 5.17848 5.30103 5.32153 5.38561 5.50051 5.51573 5.58868 5.70066 5.81059 5.90047 5.97864 6.27557 6.40065 6.43031 6.51897 6.55583 6.79908 6.95520 7.30309 7.56139 7.63080 7.68166 7.92254 8.34020 8.97102 9.55600 11.05457 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.057577 B = 0.003156 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.186541 B = 8868.793205 C = 9183.178421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.144 3.856 3 H 0.108 0.892 4 O -0.557 6.557 5 C -0.082 4.082 6 C -0.162 4.162 7 C -0.075 4.075 8 C -0.210 4.210 9 C 0.145 3.855 10 O -0.316 6.316 11 C 0.058 3.942 12 C -0.108 4.108 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.151 4.151 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.373 0.627 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.262 0.738 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.525 -1.719 19.782 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 H 0.126 0.874 4 O -0.363 6.363 5 C -0.083 4.083 6 C -0.180 4.180 7 C -0.093 4.093 8 C -0.229 4.229 9 C 0.098 3.902 10 O -0.229 6.229 11 C -0.016 4.016 12 C -0.146 4.146 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.723 3.277 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.170 4.170 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.221 0.779 27 H 0.135 0.865 28 H 0.142 0.858 29 H 0.150 0.850 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.185 -1.061 19.710 21.771 hybrid contribution 0.093 -0.308 -1.166 1.210 sum -9.091 -1.369 18.544 20.698 Atomic orbital electron populations 1.22481 0.95306 1.02910 1.03033 1.20800 0.93062 0.96032 0.81555 0.87398 1.86622 1.77396 1.29153 1.43130 1.20261 0.98275 0.94149 0.95578 1.20629 1.05036 0.93511 0.98834 1.20886 0.96299 0.99674 0.92462 1.21415 1.07198 0.93222 1.01069 1.19097 0.92995 0.90315 0.87793 1.86129 1.77440 1.36522 1.22796 1.23226 0.98174 0.96039 0.84146 1.21727 1.00825 0.98072 0.93987 1.19041 0.96357 0.95390 0.90409 1.21148 1.42918 0.93104 0.98901 0.92483 1.25021 0.95661 0.95163 0.98572 1.69950 1.46406 1.11803 1.25329 0.86602 0.79048 0.80886 0.81160 1.20149 1.21239 1.20163 1.20213 1.04715 1.00256 0.91771 0.92084 0.91456 0.91117 0.77856 0.86503 0.85804 0.85031 0.92287 0.92309 0.92173 0.92162 0.96313 0.96325 0.92832 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.51 37.16 0.35 -0.96 16 2 C 0.14 1.31 3.83 -27.88 -0.11 1.21 16 3 H 0.11 0.96 8.00 -51.93 -0.42 0.55 16 4 O -0.56 -5.25 13.19 -35.23 -0.46 -5.71 16 5 C -0.08 -0.91 4.97 -104.64 -0.52 -1.43 16 6 C -0.16 -1.68 9.32 -39.56 -0.37 -2.05 16 7 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 8 C -0.21 -2.88 9.04 -39.43 -0.36 -3.24 16 9 C 0.14 2.19 6.69 -39.22 -0.26 1.93 16 10 O -0.32 -5.47 10.14 -19.44 -0.20 -5.66 16 11 C 0.06 1.03 4.74 37.15 0.18 1.21 16 12 C -0.11 -2.26 5.52 -26.73 -0.15 -2.41 16 13 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 14 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 18 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.15 -1.99 9.61 -39.43 -0.38 -2.37 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.37 2.23 7.50 45.56 0.34 2.57 16 27 H 0.12 0.86 6.78 -52.48 -0.36 0.50 16 28 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.13 1.75 6.30 -52.49 -0.33 1.42 16 30 H 0.06 1.00 7.65 -51.93 -0.40 0.60 16 31 H 0.06 0.99 7.67 -51.93 -0.40 0.59 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 37 H 0.13 1.55 8.04 -52.49 -0.42 1.13 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -31.27 313.32 -7.68 -38.95 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.90 Total: -0.53 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.56 Total: -22.37 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.66 Total: -11.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.27 -7.68 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578736.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.159 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds