Wall clock time and date at job start Mon Mar 30 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46720 * 2 1 4 4 O 1.42894 * 109.47407 * 120.00368 * 2 1 3 5 5 C 1.50702 * 109.46902 * 240.00758 * 2 1 3 6 6 C 1.38294 * 119.97003 * 279.97005 * 5 2 1 7 7 C 1.38232 * 120.11124 * 180.02562 * 6 5 2 8 8 C 1.38173 * 120.05823 * 359.97438 * 7 6 5 9 9 C 1.38705 * 119.94203 * 359.76822 * 8 7 6 10 10 O 1.35904 * 120.05924 * 180.25551 * 9 8 7 11 11 C 1.42903 * 116.99671 * 0.25297 * 10 9 8 12 12 C 1.52991 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47383 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47453 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99915 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99804 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47168 * 60.00582 * 18 16 14 20 20 H 1.48507 * 109.47261 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47431 * 300.00361 * 18 16 14 22 22 C 1.38122 * 119.97497 * 100.00062 * 5 2 1 23 23 H 1.09005 * 109.46720 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46976 * 299.99688 * 1 2 3 25 25 H 1.08997 * 109.47186 * 59.99882 * 1 2 3 26 26 H 0.96700 * 114.00488 * 59.99834 * 4 2 1 27 27 H 1.08003 * 119.94130 * 0.05120 * 6 5 2 28 28 H 1.08008 * 119.97134 * 180.02562 * 7 6 5 29 29 H 1.07997 * 120.02588 * 180.02562 * 8 7 6 30 30 H 1.08996 * 109.46945 * 300.00498 * 11 10 9 31 31 H 1.09006 * 109.46787 * 59.99781 * 11 10 9 32 32 H 1.08996 * 109.47418 * 300.00504 * 12 11 10 33 33 H 1.09006 * 109.47277 * 60.00347 * 12 11 10 34 34 H 1.09004 * 109.47108 * 300.00327 * 13 12 11 35 35 H 1.09006 * 109.46629 * 59.99953 * 13 12 11 36 36 H 0.97002 * 119.99731 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.02504 * 359.97056 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0323 -0.7103 -1.2306 6 6 2.0670 -2.0923 -1.2648 7 6 2.5277 -2.7468 -2.3918 8 6 2.9542 -2.0213 -3.4876 9 6 2.9154 -0.6351 -3.4579 10 8 3.3296 0.0808 -4.5363 11 6 3.7877 -0.6597 -5.6694 12 6 4.2083 0.3096 -6.7758 13 6 4.6994 -0.4831 -7.9888 14 6 5.1143 0.4716 -9.0785 15 1 5.0359 1.5373 -8.9214 16 6 5.5949 -0.0153 -10.2755 17 7 5.6908 -1.3129 -10.4666 18 14 6.1098 1.1682 -11.6259 19 1 7.2036 2.0410 -11.1287 20 1 6.5864 0.3988 -12.8033 21 1 4.9485 2.0056 -12.0196 22 6 2.4582 0.0196 -2.3231 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.7211 -1.5953 1.2328 27 1 1.7332 -2.6613 -0.4095 28 1 2.5534 -3.8263 -2.4162 29 1 3.3137 -2.5332 -4.3680 30 1 4.6402 -1.2746 -5.3810 31 1 2.9845 -1.3001 -6.0338 32 1 3.3555 0.9242 -7.0640 33 1 5.0114 0.9504 -6.4117 34 1 5.5524 -1.0974 -7.7003 35 1 3.8966 -1.1242 -8.3531 36 1 6.0286 -1.6555 -11.3089 37 1 2.4309 1.0990 -2.2959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578736.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:53 Heat of formation + Delta-G solvation = -108.757406 kcal Electronic energy + Delta-G solvation = -17270.413099 eV Core-core repulsion = 14397.268353 eV Total energy + Delta-G solvation = -2873.144746 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25793 -39.46893 -37.43769 -35.96808 -33.74047 -33.01396 -31.13568 -30.00031 -28.75417 -25.65419 -24.44596 -23.64672 -22.23015 -21.59173 -19.24690 -18.52289 -17.36737 -17.21742 -17.10068 -16.89704 -16.49724 -15.84452 -15.29206 -15.06699 -14.61453 -14.52448 -14.08072 -14.04486 -13.74550 -13.23678 -13.04174 -12.81065 -12.75559 -12.53850 -12.49285 -12.21126 -12.06618 -11.72194 -11.58222 -11.48998 -11.28091 -11.11314 -10.58256 -9.85150 -9.18747 -8.23765 -6.35013 0.27406 0.45320 1.39983 1.42923 1.50918 2.17919 2.41631 2.72083 3.10005 3.54100 3.63469 3.83181 4.00453 4.05608 4.09901 4.15595 4.24515 4.34455 4.41324 4.47939 4.59757 4.78714 4.81878 4.90811 4.97738 5.05109 5.07453 5.24723 5.34277 5.44957 5.46236 5.54120 5.62748 5.78096 5.80821 6.17898 6.44114 6.79564 6.80089 7.34365 8.88113 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.057577 B = 0.003156 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.186541 B = 8868.793205 C = 9183.178421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.148 3.852 3 H 0.106 0.894 4 O -0.569 6.569 5 C -0.081 4.081 6 C -0.154 4.154 7 C -0.077 4.077 8 C -0.226 4.226 9 C 0.110 3.890 10 O -0.332 6.332 11 C 0.072 3.928 12 C -0.097 4.097 13 C 0.030 3.970 14 C -0.548 4.548 15 H 0.061 0.939 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.267 1.267 22 C -0.163 4.163 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.389 0.611 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.127 0.873 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.058 0.942 34 H -0.001 1.001 35 H 0.000 1.000 36 H 0.265 0.735 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 -1.690 21.182 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.089 3.911 3 H 0.123 0.877 4 O -0.377 6.377 5 C -0.081 4.081 6 C -0.171 4.171 7 C -0.095 4.095 8 C -0.244 4.244 9 C 0.065 3.935 10 O -0.247 6.247 11 C -0.003 4.003 12 C -0.134 4.134 13 C -0.008 4.008 14 C -0.586 4.586 15 H 0.079 0.921 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.192 1.192 22 C -0.182 4.182 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.239 0.761 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.074 0.926 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.946 -1.037 21.136 23.382 hybrid contribution 0.282 -0.383 -1.461 1.537 sum -9.664 -1.420 19.674 21.966 Atomic orbital electron populations 1.22433 0.93733 1.03711 1.03317 1.20788 0.94126 0.95666 0.80536 0.87668 1.86608 1.77746 1.30516 1.42862 1.20580 0.97254 0.94749 0.95551 1.21098 1.03125 0.93433 0.99492 1.21246 0.95360 1.01050 0.91854 1.21545 1.07991 0.92858 1.02050 1.19394 0.95198 0.91145 0.87776 1.86041 1.78368 1.36999 1.23267 1.22860 0.98532 0.94926 0.83940 1.21438 1.00589 0.97961 0.93441 1.18902 0.94974 0.95020 0.91866 1.21607 1.43188 0.93760 1.00034 0.92126 1.25965 0.95500 0.96972 1.01207 1.70074 1.47148 1.13746 1.26168 0.85477 0.78999 0.78609 0.77842 1.19192 1.20646 1.19155 1.20425 1.05007 1.00804 0.91929 0.91044 0.90507 0.91511 0.76097 0.82789 0.83152 0.85488 0.91974 0.91843 0.92199 0.92303 0.98247 0.98179 0.92588 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 9.51 71.98 0.68 -1.42 16 2 C 0.15 2.36 3.83 29.85 0.11 2.47 16 3 H 0.11 1.72 8.00 -2.38 -0.02 1.71 16 4 O -0.57 -9.08 13.19 -148.98 -1.96 -11.04 16 5 C -0.08 -1.64 4.97 -19.88 -0.10 -1.74 16 6 C -0.15 -2.72 9.32 22.28 0.21 -2.52 16 7 C -0.08 -1.59 10.04 22.25 0.22 -1.37 16 8 C -0.23 -6.10 9.04 22.37 0.20 -5.90 16 9 C 0.11 3.36 6.69 22.51 0.15 3.51 16 10 O -0.33 -11.78 10.14 -92.47 -0.94 -12.72 16 11 C 0.07 2.62 4.74 71.98 0.34 2.96 16 12 C -0.10 -4.13 5.52 30.59 0.17 -3.96 16 13 C 0.03 1.55 4.97 29.85 0.15 1.70 16 14 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 16 C 0.00 0.10 5.46 84.65 0.46 0.56 16 17 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 18 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 C -0.16 -4.23 9.61 22.37 0.21 -4.01 16 23 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.39 3.20 7.50 -74.06 -0.56 2.65 16 27 H 0.15 1.54 6.78 -2.91 -0.02 1.52 16 28 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.13 3.43 6.30 -2.91 -0.02 3.42 16 30 H 0.06 2.18 7.65 -2.39 -0.02 2.16 16 31 H 0.06 2.21 7.67 -2.38 -0.02 2.19 16 32 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 35 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 36 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.13 3.20 8.04 -2.91 -0.02 3.18 16 Total: -1.00 -67.40 313.32 2.96 -64.44 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.50 Total: 9.99 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 3.05 Total: -40.85 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.28 Total: -56.03 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -2.90 Total: -23.76 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -67.40 2.96 -64.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578736.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.314 kcal (2) G-P(sol) polarization free energy of solvation -67.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds