Wall clock time and date at job start Mon Mar 30 2020 06:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46835 * 2 1 4 4 C 1.35897 * 116.99781 * 179.97438 * 3 2 1 5 5 C 1.38753 * 120.05719 * 0.04315 * 4 3 2 6 6 C 1.38122 * 119.94946 * 180.02562 * 5 4 3 7 7 C 1.38295 * 120.05026 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11401 * 359.97438 * 7 6 5 9 9 C 1.38169 * 120.05455 * 0.04496 * 8 7 6 10 10 C 1.50693 * 120.02813 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47036 * 145.00042 * 10 9 8 12 12 O 1.42905 * 109.46804 * 25.00444 * 10 9 8 13 13 C 1.52998 * 109.47660 * 265.00139 * 10 9 8 14 14 H 1.08999 * 109.47268 * 305.00013 * 13 10 9 15 15 C 1.53003 * 109.47013 * 65.00081 * 13 10 9 16 16 C 1.50703 * 109.47346 * 184.99800 * 13 10 9 17 17 H 1.08000 * 119.99959 * 0.02562 * 16 13 10 18 18 C 1.37877 * 119.99730 * 179.97438 * 16 13 10 19 19 N 1.31522 * 119.99424 * 179.97438 * 18 16 13 20 20 Si 1.86796 * 120.00263 * 0.02562 * 18 16 13 21 21 H 1.48505 * 109.47211 * 90.00016 * 20 18 16 22 22 H 1.48500 * 109.47178 * 209.99986 * 20 18 16 23 23 H 1.48505 * 109.47092 * 330.00000 * 20 18 16 24 24 H 1.09001 * 109.47290 * 60.00136 * 1 2 3 25 25 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47393 * 300.00560 * 1 2 3 27 27 H 1.08993 * 109.47250 * 240.00070 * 2 1 3 28 28 H 1.08996 * 109.46867 * 119.99671 * 2 1 3 29 29 H 1.08002 * 120.02760 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.97891 * 180.25368 * 6 5 4 31 31 H 1.07997 * 119.93892 * 179.97438 * 7 6 5 32 32 H 1.07998 * 119.97188 * 180.02562 * 8 7 6 33 33 H 0.96700 * 114.00079 * 299.99074 * 12 10 9 34 34 H 1.09003 * 109.46985 * 300.00203 * 15 13 10 35 35 H 1.08999 * 109.47159 * 59.99865 * 15 13 10 36 36 H 1.08994 * 109.47283 * 180.02562 * 15 13 10 37 37 H 0.97002 * 119.99421 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1999 0.4259 0.0002 6 6 5.5688 0.6095 0.0012 7 6 6.0961 1.8879 0.0022 8 6 5.2551 2.9851 0.0015 9 6 3.8850 2.8067 0.0008 10 6 2.9687 4.0031 0.0006 11 1 2.0798 3.7798 -0.5893 12 8 3.6488 5.1238 -0.5683 13 6 2.5581 4.3313 1.4375 14 1 2.1190 3.4478 1.9008 15 6 3.7905 4.7655 2.2335 16 6 1.5469 5.4487 1.4282 17 1 1.2286 5.8811 0.4911 18 6 1.0273 5.9181 2.6159 19 7 0.1452 6.8936 2.6078 20 14 1.5773 5.1697 4.2366 21 1 2.7587 5.9100 4.7481 22 1 0.4716 5.2592 5.2238 23 1 1.9390 3.7448 4.0263 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7886 -0.5727 -0.0002 30 1 6.2280 -0.2460 -0.0032 31 1 7.1668 2.0294 0.0034 32 1 5.6693 3.9825 0.0018 33 1 4.4515 5.3793 -0.0934 34 1 4.5219 3.9574 2.2402 35 1 4.2296 5.6491 1.7702 36 1 3.4981 4.9990 3.2572 37 1 -0.2201 7.2241 3.4434 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:54 Heat of formation + Delta-G solvation = -65.500567 kcal Electronic energy + Delta-G solvation = -18968.457467 eV Core-core repulsion = 16097.188478 eV Total energy + Delta-G solvation = -2871.268989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.19056 -37.85889 -36.50864 -33.27774 -32.01178 -31.22080 -30.33579 -29.34501 -25.89199 -24.70715 -23.78623 -21.76177 -21.16399 -19.44239 -18.15575 -16.75402 -16.21660 -15.95428 -15.79423 -15.17996 -14.37777 -14.27017 -13.93508 -13.55757 -13.28711 -13.05886 -12.57431 -12.51926 -12.24104 -11.86340 -11.78018 -11.55279 -11.38784 -11.05171 -10.82065 -10.64598 -10.57743 -10.23704 -10.00787 -9.60928 -9.03731 -8.89417 -8.55218 -8.46923 -7.82524 -5.98429 -3.95738 1.52962 1.65590 3.30322 3.39214 3.41323 3.43940 3.96745 4.47340 4.88820 4.95205 4.97112 5.12112 5.21793 5.22737 5.27193 5.36684 5.47184 5.60012 5.66509 5.86444 5.87547 6.05949 6.09964 6.15196 6.28809 6.35742 6.51613 6.58128 6.66861 6.71990 6.87672 6.99164 7.15983 7.48749 7.64999 7.82271 8.43242 8.62135 9.10172 9.63818 11.15094 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.008545 C = 0.007063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.430705 B = 3276.000161 C = 3963.347441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.303 6.303 4 C 0.135 3.865 5 C -0.212 4.212 6 C -0.095 4.095 7 C -0.159 4.159 8 C -0.079 4.079 9 C -0.127 4.127 10 C 0.169 3.831 11 H 0.105 0.895 12 O -0.551 6.551 13 C -0.010 4.010 14 H 0.036 0.964 15 C -0.156 4.156 16 C -0.499 4.499 17 H 0.079 0.921 18 C 0.068 3.932 19 N -0.903 5.903 20 Si 0.886 3.114 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.268 1.268 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.361 0.639 34 H 0.031 0.969 35 H 0.052 0.948 36 H 0.041 0.959 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.492 -14.714 -4.271 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.216 6.216 4 C 0.089 3.911 5 C -0.230 4.230 6 C -0.113 4.113 7 C -0.177 4.177 8 C -0.097 4.097 9 C -0.128 4.128 10 C 0.110 3.890 11 H 0.123 0.877 12 O -0.356 6.356 13 C -0.029 4.029 14 H 0.054 0.946 15 C -0.213 4.213 16 C -0.537 4.537 17 H 0.097 0.903 18 C -0.133 4.133 19 N -0.542 5.542 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.227 1.227 23 H -0.193 1.193 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.209 0.791 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.705 -14.492 -4.589 17.043 hybrid contribution 0.852 -0.644 1.522 1.859 sum 8.558 -15.137 -3.068 17.657 Atomic orbital electron populations 1.21772 0.92725 1.02355 1.04190 1.22737 0.96074 0.82408 1.00755 1.86201 1.18692 1.28509 1.88204 1.18768 0.82500 0.93393 0.96396 1.21155 0.94443 0.97646 1.09801 1.20804 0.94181 0.97074 0.99215 1.20952 0.99461 0.92501 1.04767 1.20756 0.91911 0.99093 0.97934 1.20438 0.95220 0.94183 1.02977 1.20692 0.91521 0.80212 0.96588 0.87742 1.86576 1.42707 1.49919 1.56391 1.19704 0.94095 0.98070 0.90986 0.94629 1.22238 0.99103 0.99640 1.00352 1.20956 1.21446 1.16380 0.94883 0.90334 1.24991 0.94843 0.94703 0.98755 1.69907 1.30124 1.27213 1.26919 0.86876 0.77009 0.80362 0.84053 1.20840 1.22676 1.19346 0.91342 0.90784 0.91059 0.92487 0.92404 0.85914 0.86376 0.86289 0.85562 0.79121 0.94958 0.92881 0.94008 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 37.16 0.38 -1.34 16 2 C 0.06 0.70 5.46 37.16 0.20 0.90 16 3 O -0.30 -5.24 9.27 -19.42 -0.18 -5.42 16 4 C 0.14 2.31 6.66 -39.22 -0.26 2.05 16 5 C -0.21 -2.98 9.04 -39.43 -0.36 -3.34 16 6 C -0.09 -1.22 10.04 -39.60 -0.40 -1.61 16 7 C -0.16 -2.12 10.04 -39.56 -0.40 -2.51 16 8 C -0.08 -1.22 7.97 -39.60 -0.32 -1.54 16 9 C -0.13 -2.31 4.51 -104.48 -0.47 -2.78 16 10 C 0.17 3.59 2.64 -27.89 -0.07 3.52 16 11 H 0.10 2.39 7.69 -51.93 -0.40 1.99 16 12 O -0.55 -11.47 12.64 -35.23 -0.45 -11.91 16 13 C -0.01 -0.23 1.72 -91.77 -0.16 -0.39 16 14 H 0.04 0.91 7.20 -51.93 -0.37 0.53 16 15 C -0.16 -3.40 7.90 37.16 0.29 -3.11 16 16 C -0.50 -14.35 8.91 -34.44 -0.31 -14.66 16 17 H 0.08 2.49 7.99 -52.49 -0.42 2.07 16 18 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 19 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 20 Si 0.89 22.62 24.37 -169.99 -4.14 18.47 16 21 H -0.28 -6.98 6.87 56.52 0.39 -6.59 16 22 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 23 H -0.27 -6.64 6.53 56.52 0.37 -6.27 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 29 H 0.12 1.41 6.30 -52.49 -0.33 1.08 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.13 1.75 6.41 -52.49 -0.34 1.41 16 33 H 0.36 6.33 5.47 45.56 0.25 6.58 16 34 H 0.03 0.61 6.52 -51.93 -0.34 0.27 16 35 H 0.05 1.08 6.72 -51.93 -0.35 0.73 16 36 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 293.11 15.07 4.42 4.42 Total: -1.00 -32.92 293.11 -6.09 -39.01 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -4.56 Total: 5.83 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -1.96 Total: -22.92 kcal Atomic # 7 Polarization: -28.25 SS G_CDS: 0.77 Total: -27.48 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.63 Total: -17.33 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.14 Total: 18.47 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.92 -6.09 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.487 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds