Wall clock time and date at job start Mon Mar 30 2020 06:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46835 * 2 1 4 4 C 1.35897 * 116.99781 * 179.97438 * 3 2 1 5 5 C 1.38753 * 120.05719 * 0.04315 * 4 3 2 6 6 C 1.38122 * 119.94946 * 180.02562 * 5 4 3 7 7 C 1.38295 * 120.05026 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11401 * 359.97438 * 7 6 5 9 9 C 1.38169 * 120.05455 * 0.04496 * 8 7 6 10 10 C 1.50693 * 120.02813 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47036 * 145.00042 * 10 9 8 12 12 O 1.42905 * 109.46804 * 25.00444 * 10 9 8 13 13 C 1.52998 * 109.47660 * 265.00139 * 10 9 8 14 14 H 1.08999 * 109.47268 * 305.00013 * 13 10 9 15 15 C 1.53003 * 109.47013 * 65.00081 * 13 10 9 16 16 C 1.50703 * 109.47346 * 184.99800 * 13 10 9 17 17 H 1.08000 * 119.99959 * 0.02562 * 16 13 10 18 18 C 1.37877 * 119.99730 * 179.97438 * 16 13 10 19 19 N 1.31522 * 119.99424 * 179.97438 * 18 16 13 20 20 Si 1.86796 * 120.00263 * 0.02562 * 18 16 13 21 21 H 1.48505 * 109.47211 * 90.00016 * 20 18 16 22 22 H 1.48500 * 109.47178 * 209.99986 * 20 18 16 23 23 H 1.48505 * 109.47092 * 330.00000 * 20 18 16 24 24 H 1.09001 * 109.47290 * 60.00136 * 1 2 3 25 25 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47393 * 300.00560 * 1 2 3 27 27 H 1.08993 * 109.47250 * 240.00070 * 2 1 3 28 28 H 1.08996 * 109.46867 * 119.99671 * 2 1 3 29 29 H 1.08002 * 120.02760 * 359.97438 * 5 4 3 30 30 H 1.07997 * 119.97891 * 180.25368 * 6 5 4 31 31 H 1.07997 * 119.93892 * 179.97438 * 7 6 5 32 32 H 1.07998 * 119.97188 * 180.02562 * 8 7 6 33 33 H 0.96700 * 114.00079 * 299.99074 * 12 10 9 34 34 H 1.09003 * 109.46985 * 300.00203 * 15 13 10 35 35 H 1.08999 * 109.47159 * 59.99865 * 15 13 10 36 36 H 1.08994 * 109.47283 * 180.02562 * 15 13 10 37 37 H 0.97002 * 119.99421 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1999 0.4259 0.0002 6 6 5.5688 0.6095 0.0012 7 6 6.0961 1.8879 0.0022 8 6 5.2551 2.9851 0.0015 9 6 3.8850 2.8067 0.0008 10 6 2.9687 4.0031 0.0006 11 1 2.0798 3.7798 -0.5893 12 8 3.6488 5.1238 -0.5683 13 6 2.5581 4.3313 1.4375 14 1 2.1190 3.4478 1.9008 15 6 3.7905 4.7655 2.2335 16 6 1.5469 5.4487 1.4282 17 1 1.2286 5.8811 0.4911 18 6 1.0273 5.9181 2.6159 19 7 0.1452 6.8936 2.6078 20 14 1.5773 5.1697 4.2366 21 1 2.7587 5.9100 4.7481 22 1 0.4716 5.2592 5.2238 23 1 1.9390 3.7448 4.0263 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7886 -0.5727 -0.0002 30 1 6.2280 -0.2460 -0.0032 31 1 7.1668 2.0294 0.0034 32 1 5.6693 3.9825 0.0018 33 1 4.4515 5.3793 -0.0934 34 1 4.5219 3.9574 2.2402 35 1 4.2296 5.6491 1.7702 36 1 3.4981 4.9990 3.2572 37 1 -0.2201 7.2241 3.4434 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:54 Heat of formation + Delta-G solvation = -88.995422 kcal Electronic energy + Delta-G solvation = -18969.476280 eV Core-core repulsion = 16097.188478 eV Total energy + Delta-G solvation = -2872.287802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.39142 -39.25422 -37.83991 -35.31117 -33.41830 -32.73391 -31.67697 -30.48809 -27.55138 -26.66423 -24.81981 -23.05773 -22.34005 -21.16454 -19.38125 -18.73987 -17.84140 -17.10842 -16.99103 -16.72164 -16.10543 -15.56914 -15.37362 -15.01608 -14.67398 -14.40502 -14.21072 -13.98478 -13.43932 -13.36852 -13.11141 -12.76959 -12.74227 -12.55541 -12.49551 -12.06160 -12.01300 -11.73828 -11.62024 -11.52237 -11.06452 -10.75114 -10.61198 -9.71579 -9.01599 -8.28316 -6.30792 0.41102 0.54843 1.26474 1.32968 1.43858 2.31521 2.35696 2.84740 3.06036 3.66770 3.80277 3.93520 4.05888 4.11310 4.22857 4.31364 4.34621 4.38472 4.45241 4.58632 4.64051 4.68480 4.89969 4.91324 4.92874 4.99277 5.09522 5.21342 5.22753 5.42580 5.50744 5.61185 5.67958 5.72890 5.95457 6.32771 6.56043 6.75235 6.92824 7.32535 8.89278 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.008545 C = 0.007063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.430705 B = 3276.000161 C = 3963.347441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 O -0.339 6.339 4 C 0.113 3.887 5 C -0.211 4.211 6 C -0.084 4.084 7 C -0.155 4.155 8 C -0.085 4.085 9 C -0.160 4.160 10 C 0.180 3.820 11 H 0.069 0.931 12 O -0.565 6.565 13 C -0.005 4.005 14 H 0.021 0.979 15 C -0.150 4.150 16 C -0.505 4.505 17 H 0.028 0.972 18 C 0.009 3.991 19 N -0.952 5.952 20 Si 0.954 3.046 21 H -0.263 1.263 22 H -0.299 1.299 23 H -0.255 1.255 24 H 0.057 0.943 25 H 0.109 0.891 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.137 0.863 33 H 0.376 0.624 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.031 0.969 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.594 -17.603 -3.379 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.254 6.254 4 C 0.068 3.932 5 C -0.230 4.230 6 C -0.102 4.102 7 C -0.173 4.173 8 C -0.103 4.103 9 C -0.161 4.161 10 C 0.121 3.879 11 H 0.087 0.913 12 O -0.372 6.372 13 C -0.024 4.024 14 H 0.039 0.961 15 C -0.206 4.206 16 C -0.543 4.543 17 H 0.046 0.954 18 C -0.187 4.187 19 N -0.593 5.593 20 Si 0.781 3.219 21 H -0.188 1.188 22 H -0.226 1.226 23 H -0.180 1.180 24 H 0.076 0.924 25 H 0.127 0.873 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.167 0.833 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.155 0.845 33 H 0.225 0.775 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.831 -17.392 -3.709 20.822 hybrid contribution -0.132 0.216 1.100 1.129 sum 10.698 -17.176 -2.609 20.403 Atomic orbital electron populations 1.21826 0.92396 1.04115 1.02613 1.23044 0.96446 0.80885 1.02373 1.86169 1.19425 1.31314 1.88500 1.19054 0.82864 0.94038 0.97269 1.21481 0.94872 0.97817 1.08787 1.21328 0.94056 0.98285 0.96523 1.21355 1.00884 0.91913 1.03148 1.20979 0.90920 1.00726 0.97678 1.20159 0.95829 0.93098 1.06979 1.20210 0.91710 0.82004 0.93957 0.91338 1.86530 1.43555 1.50347 1.56800 1.19569 0.93949 0.95315 0.93572 0.96068 1.22108 0.98414 1.01178 0.98937 1.21203 1.22701 1.17397 0.92980 0.95360 1.25874 0.94845 0.95100 1.02882 1.70069 1.31902 1.29177 1.28130 0.85771 0.77048 0.80193 0.78867 1.18846 1.22643 1.17968 0.92387 0.87297 0.93152 0.90342 0.91013 0.83350 0.82497 0.82929 0.84482 0.77462 0.91723 0.91964 0.95085 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 10.28 71.98 0.74 -2.64 16 2 C 0.05 1.12 5.46 71.98 0.39 1.51 16 3 O -0.34 -11.91 9.27 -92.39 -0.86 -12.77 16 4 C 0.11 3.76 6.66 22.51 0.15 3.91 16 5 C -0.21 -5.22 9.04 22.37 0.20 -5.01 16 6 C -0.08 -1.74 10.04 22.26 0.22 -1.51 16 7 C -0.16 -3.42 10.04 22.28 0.22 -3.19 16 8 C -0.09 -2.42 7.97 22.25 0.18 -2.24 16 9 C -0.16 -5.70 4.51 -19.77 -0.09 -5.79 16 10 C 0.18 7.95 2.64 29.85 0.08 8.03 16 11 H 0.07 3.42 7.69 -2.39 -0.02 3.40 16 12 O -0.56 -24.18 12.64 -148.98 -1.88 -26.06 16 13 C 0.00 -0.24 1.72 -11.54 -0.02 -0.26 16 14 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 15 C -0.15 -6.28 7.90 71.98 0.57 -5.71 16 16 C -0.50 -30.49 8.91 25.60 0.23 -30.26 16 17 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 18 C 0.01 0.55 5.45 84.65 0.46 1.02 16 19 N -0.95 -61.95 13.96 21.45 0.30 -61.65 16 20 Si 0.95 47.06 24.37 68.60 1.67 48.73 16 21 H -0.26 -12.12 6.87 99.48 0.68 -11.44 16 22 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 23 H -0.26 -11.96 6.53 99.48 0.65 -11.31 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.50 7.66 -2.39 -0.02 1.48 16 28 H 0.07 1.48 7.66 -2.39 -0.02 1.46 16 29 H 0.15 2.79 6.30 -2.91 -0.02 2.77 16 30 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 31 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.14 3.43 6.41 -2.91 -0.02 3.41 16 33 H 0.38 13.08 5.47 -74.06 -0.41 12.67 16 34 H 0.06 2.29 6.52 -2.39 -0.02 2.27 16 35 H 0.06 2.46 6.72 -2.39 -0.02 2.44 16 36 H 0.03 1.36 3.27 -2.39 -0.01 1.35 16 37 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -75.59 293.11 3.16 -72.44 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.59 Total: 21.47 kcal Atomic # 6 Polarization: -45.50 SS G_CDS: 3.34 Total: -42.16 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 0.30 Total: -61.65 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -2.74 Total: -38.83 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.67 Total: 48.73 kcal Total: -75.59 3.16 -72.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.559 kcal (2) G-P(sol) polarization free energy of solvation -75.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds