Wall clock time and date at job start Mon Mar 30 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.46948 * 2 1 4 4 C 1.35905 * 117.00097 * 179.97438 * 3 2 1 5 5 C 1.38755 * 120.05547 * 0.02816 * 4 3 2 6 6 C 1.38119 * 119.94277 * 179.97438 * 5 4 3 7 7 C 1.38281 * 120.06121 * 359.97438 * 6 5 4 8 8 C 1.38251 * 120.10861 * 359.74766 * 7 6 5 9 9 C 1.38171 * 120.05187 * 0.50446 * 8 7 6 10 10 C 1.50703 * 120.02572 * 179.77471 * 9 8 7 11 11 H 1.08996 * 109.47057 * 144.72648 * 10 9 8 12 12 O 1.42896 * 109.47100 * 24.71984 * 10 9 8 13 13 C 1.53000 * 109.46653 * 264.72578 * 10 9 8 14 14 H 1.08994 * 109.48028 * 59.99997 * 13 10 9 15 15 C 1.53003 * 109.47009 * 299.99475 * 13 10 9 16 16 C 1.50708 * 109.46973 * 179.97438 * 13 10 9 17 17 H 1.07991 * 119.99789 * 0.02562 * 16 13 10 18 18 C 1.37877 * 120.00008 * 179.97438 * 16 13 10 19 19 N 1.31514 * 120.00089 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99938 * 0.02562 * 18 16 13 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 H 1.08997 * 109.47197 * 299.99413 * 1 2 3 25 25 H 1.08998 * 109.47111 * 59.99786 * 1 2 3 26 26 H 1.09003 * 109.46956 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47574 * 240.00201 * 2 1 3 28 28 H 1.08996 * 109.47533 * 119.99918 * 2 1 3 29 29 H 1.08006 * 120.02730 * 359.95313 * 5 4 3 30 30 H 1.08004 * 119.96536 * 179.97438 * 6 5 4 31 31 H 1.07994 * 119.94677 * 179.97438 * 7 6 5 32 32 H 1.07996 * 119.97375 * 180.25604 * 8 7 6 33 33 H 0.96700 * 114.00250 * 300.00003 * 12 10 9 34 34 H 1.09003 * 109.47241 * 180.02562 * 15 13 10 35 35 H 1.08996 * 109.47696 * 300.00540 * 15 13 10 36 36 H 1.08998 * 109.46607 * 60.00537 * 15 13 10 37 37 H 0.96997 * 119.99848 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.2000 0.4259 0.0005 6 6 5.5689 0.6096 0.0005 7 6 6.0962 1.8879 0.0000 8 6 5.2551 2.9851 -0.0057 9 6 3.8850 2.8067 -0.0005 10 6 2.9686 4.0031 -0.0016 11 1 2.0797 3.7794 -0.5913 12 8 3.6487 5.1234 -0.5712 13 6 2.5582 4.3324 1.4351 14 1 3.4470 4.5561 2.0249 15 6 1.8300 3.1329 2.0450 16 6 1.6423 5.5292 1.4341 17 1 1.3791 6.0069 0.5020 18 6 1.1397 6.0137 2.6231 19 7 0.3401 7.0578 2.6222 20 14 1.5945 5.1870 4.2352 21 1 0.6077 4.1199 4.5400 22 1 1.5880 6.1937 5.3269 23 1 2.9495 4.5901 4.1205 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7886 -0.5728 0.0008 30 1 6.2280 -0.2460 0.0009 31 1 7.1668 2.0295 0.0005 32 1 5.6693 3.9825 -0.0102 33 1 4.4514 5.3792 -0.0965 34 1 1.5371 3.3676 3.0684 35 1 0.9410 2.9091 1.4554 36 1 2.4928 2.2676 2.0458 37 1 -0.0131 7.3988 3.4587 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:59 Heat of formation + Delta-G solvation = -64.466811 kcal Electronic energy + Delta-G solvation = -19094.185642 eV Core-core repulsion = 16222.961480 eV Total energy + Delta-G solvation = -2871.224162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24818 -37.68977 -36.43515 -33.53104 -32.05888 -31.27378 -30.36926 -29.24622 -25.25567 -24.91497 -23.80050 -21.69544 -21.26407 -19.59818 -18.19692 -16.82194 -16.25514 -15.99354 -15.75281 -14.96544 -14.37300 -14.25698 -13.84036 -13.55551 -13.25857 -13.06334 -12.58091 -12.47605 -12.00963 -11.90786 -11.88276 -11.60670 -11.33617 -10.94702 -10.80813 -10.63702 -10.50006 -10.42322 -9.84215 -9.61472 -9.02606 -8.86437 -8.54357 -8.46220 -7.81220 -5.98066 -3.95581 1.53274 1.66013 3.31846 3.39130 3.41978 3.44821 3.97055 4.47994 4.88719 4.95120 4.96316 5.11784 5.22159 5.22814 5.27065 5.37463 5.46724 5.60219 5.66739 5.85044 5.87866 6.03976 6.12837 6.14867 6.34464 6.49673 6.52634 6.63968 6.74229 6.82302 6.95344 7.01037 7.13126 7.57147 7.65197 7.82357 8.44229 8.62814 9.11281 9.64287 11.15377 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.008581 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.873416 B = 3262.360195 C = 3908.826735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.299 6.299 4 C 0.139 3.861 5 C -0.213 4.213 6 C -0.095 4.095 7 C -0.158 4.158 8 C -0.082 4.082 9 C -0.129 4.129 10 C 0.168 3.832 11 H 0.104 0.896 12 O -0.550 6.550 13 C -0.010 4.010 14 H 0.024 0.976 15 C -0.138 4.138 16 C -0.499 4.499 17 H 0.080 0.920 18 C 0.068 3.932 19 N -0.903 5.903 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.300 1.300 23 H -0.269 1.269 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.363 0.637 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.462 -15.513 -4.426 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.212 6.212 4 C 0.094 3.906 5 C -0.232 4.232 6 C -0.113 4.113 7 C -0.176 4.176 8 C -0.100 4.100 9 C -0.130 4.130 10 C 0.109 3.891 11 H 0.121 0.879 12 O -0.354 6.354 13 C -0.029 4.029 14 H 0.042 0.958 15 C -0.195 4.195 16 C -0.537 4.537 17 H 0.098 0.902 18 C -0.133 4.133 19 N -0.542 5.542 20 Si 0.719 3.281 21 H -0.209 1.209 22 H -0.228 1.228 23 H -0.195 1.195 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.209 0.791 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.685 -15.281 -4.748 17.342 hybrid contribution 0.710 -0.789 1.503 1.840 sum 7.395 -16.071 -3.244 17.985 Atomic orbital electron populations 1.21771 0.92796 1.02337 1.04097 1.22720 0.96009 0.82654 1.00726 1.86280 1.18624 1.28198 1.88147 1.18685 0.82554 0.93296 0.96073 1.21154 0.94441 0.97655 1.09937 1.20802 0.94212 0.97066 0.99216 1.20946 0.99461 0.92498 1.04742 1.20773 0.91946 0.99186 0.98058 1.20446 0.95180 0.94300 1.03038 1.20718 0.91535 0.80250 0.96561 0.87853 1.86575 1.42713 1.49938 1.56181 1.19751 0.96763 0.95036 0.91318 0.95775 1.22114 1.00525 0.97446 0.99411 1.20962 1.26886 1.10761 0.95135 0.90239 1.24988 0.94754 0.94815 0.98718 1.69902 1.33152 1.24276 1.26847 0.86857 0.79400 0.78129 0.83726 1.20859 1.22782 1.19454 0.91117 0.91381 0.90850 0.92558 0.92442 0.85944 0.86410 0.86299 0.85462 0.79054 0.94901 0.92292 0.95319 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 37.16 0.38 -1.29 16 2 C 0.05 0.66 5.46 37.16 0.20 0.86 16 3 O -0.30 -4.95 6.74 -19.44 -0.13 -5.08 16 4 C 0.14 2.33 5.20 -39.22 -0.20 2.13 16 5 C -0.21 -2.97 9.04 -39.43 -0.36 -3.33 16 6 C -0.09 -1.22 10.04 -39.61 -0.40 -1.62 16 7 C -0.16 -2.12 10.04 -39.56 -0.40 -2.52 16 8 C -0.08 -1.27 9.30 -39.60 -0.37 -1.64 16 9 C -0.13 -2.32 4.68 -104.47 -0.49 -2.81 16 10 C 0.17 3.56 2.59 -27.88 -0.07 3.49 16 11 H 0.10 2.34 7.69 -51.93 -0.40 1.94 16 12 O -0.55 -11.46 12.57 -35.23 -0.44 -11.90 16 13 C -0.01 -0.23 1.66 -91.77 -0.15 -0.38 16 14 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 15 C -0.14 -3.13 7.18 37.16 0.27 -2.86 16 16 C -0.50 -14.34 8.81 -34.44 -0.30 -14.65 16 17 H 0.08 2.52 7.94 -52.49 -0.42 2.10 16 18 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 19 N -0.90 -28.26 13.96 55.43 0.77 -27.48 16 20 Si 0.89 22.71 24.37 -169.99 -4.14 18.56 16 21 H -0.28 -7.04 6.87 56.52 0.39 -6.65 16 22 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 23 H -0.27 -6.64 6.53 56.52 0.37 -6.28 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 28 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 29 H 0.12 1.40 6.30 -52.48 -0.33 1.06 16 30 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.13 1.75 6.40 -52.49 -0.34 1.41 16 33 H 0.36 6.27 7.33 45.56 0.33 6.60 16 34 H 0.03 0.78 3.27 -51.93 -0.17 0.61 16 35 H 0.06 1.32 7.44 -51.93 -0.39 0.94 16 36 H 0.03 0.58 5.67 -51.93 -0.29 0.29 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 291.28 15.07 4.39 4.39 Total: -1.00 -32.89 291.28 -6.00 -38.89 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.46 Total: 5.32 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -1.99 Total: -22.70 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 0.77 Total: -27.48 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.57 Total: -16.98 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.14 Total: 18.56 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.89 -6.00 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.573 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds