Wall clock time and date at job start Mon Mar 30 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.46948 * 2 1 4 4 C 1.35905 * 117.00097 * 179.97438 * 3 2 1 5 5 C 1.38755 * 120.05547 * 0.02816 * 4 3 2 6 6 C 1.38119 * 119.94277 * 179.97438 * 5 4 3 7 7 C 1.38281 * 120.06121 * 359.97438 * 6 5 4 8 8 C 1.38251 * 120.10861 * 359.74766 * 7 6 5 9 9 C 1.38171 * 120.05187 * 0.50446 * 8 7 6 10 10 C 1.50703 * 120.02572 * 179.77471 * 9 8 7 11 11 H 1.08996 * 109.47057 * 144.72648 * 10 9 8 12 12 O 1.42896 * 109.47100 * 24.71984 * 10 9 8 13 13 C 1.53000 * 109.46653 * 264.72578 * 10 9 8 14 14 H 1.08994 * 109.48028 * 59.99997 * 13 10 9 15 15 C 1.53003 * 109.47009 * 299.99475 * 13 10 9 16 16 C 1.50708 * 109.46973 * 179.97438 * 13 10 9 17 17 H 1.07991 * 119.99789 * 0.02562 * 16 13 10 18 18 C 1.37877 * 120.00008 * 179.97438 * 16 13 10 19 19 N 1.31514 * 120.00089 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99938 * 0.02562 * 18 16 13 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 H 1.08997 * 109.47197 * 299.99413 * 1 2 3 25 25 H 1.08998 * 109.47111 * 59.99786 * 1 2 3 26 26 H 1.09003 * 109.46956 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47574 * 240.00201 * 2 1 3 28 28 H 1.08996 * 109.47533 * 119.99918 * 2 1 3 29 29 H 1.08006 * 120.02730 * 359.95313 * 5 4 3 30 30 H 1.08004 * 119.96536 * 179.97438 * 6 5 4 31 31 H 1.07994 * 119.94677 * 179.97438 * 7 6 5 32 32 H 1.07996 * 119.97375 * 180.25604 * 8 7 6 33 33 H 0.96700 * 114.00250 * 300.00003 * 12 10 9 34 34 H 1.09003 * 109.47241 * 180.02562 * 15 13 10 35 35 H 1.08996 * 109.47696 * 300.00540 * 15 13 10 36 36 H 1.08998 * 109.46607 * 60.00537 * 15 13 10 37 37 H 0.96997 * 119.99848 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.2000 0.4259 0.0005 6 6 5.5689 0.6096 0.0005 7 6 6.0962 1.8879 0.0000 8 6 5.2551 2.9851 -0.0057 9 6 3.8850 2.8067 -0.0005 10 6 2.9686 4.0031 -0.0016 11 1 2.0797 3.7794 -0.5913 12 8 3.6487 5.1234 -0.5712 13 6 2.5582 4.3324 1.4351 14 1 3.4470 4.5561 2.0249 15 6 1.8300 3.1329 2.0450 16 6 1.6423 5.5292 1.4341 17 1 1.3791 6.0069 0.5020 18 6 1.1397 6.0137 2.6231 19 7 0.3401 7.0578 2.6222 20 14 1.5945 5.1870 4.2352 21 1 0.6077 4.1199 4.5400 22 1 1.5880 6.1937 5.3269 23 1 2.9495 4.5901 4.1205 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7886 -0.5728 0.0008 30 1 6.2280 -0.2460 0.0009 31 1 7.1668 2.0295 0.0005 32 1 5.6693 3.9825 -0.0102 33 1 4.4514 5.3792 -0.0965 34 1 1.5371 3.3676 3.0684 35 1 0.9410 2.9091 1.4554 36 1 2.4928 2.2676 2.0458 37 1 -0.0131 7.3988 3.4587 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:59 Heat of formation + Delta-G solvation = -87.746737 kcal Electronic energy + Delta-G solvation = -19095.195135 eV Core-core repulsion = 16222.961480 eV Total energy + Delta-G solvation = -2872.233655 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.42927 -39.01253 -37.80726 -35.50673 -33.64295 -32.64935 -31.66257 -30.38541 -27.08778 -26.71665 -24.84782 -22.97876 -22.46758 -21.28175 -19.43640 -18.73164 -17.80978 -17.11474 -17.04970 -16.52986 -15.97944 -15.54572 -15.27051 -15.02427 -14.67570 -14.47549 -14.17798 -13.77892 -13.47847 -13.34224 -13.05800 -12.80135 -12.76959 -12.48137 -12.45913 -12.20663 -11.95178 -11.71048 -11.64763 -11.39127 -11.01195 -10.75779 -10.58943 -9.72021 -8.98593 -8.27609 -6.30107 0.41947 0.56331 1.28306 1.32865 1.44275 2.32057 2.38166 2.85781 3.06566 3.67592 3.81403 3.95189 4.09781 4.13746 4.25802 4.28102 4.38136 4.42706 4.47441 4.60184 4.69638 4.78530 4.91743 4.96066 4.96632 5.03159 5.09970 5.19994 5.26859 5.46217 5.51719 5.62223 5.68026 5.76631 5.95948 6.34131 6.58646 6.75930 6.94854 7.33354 8.89874 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.008581 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.873416 B = 3262.360195 C = 3908.826735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.329 6.329 4 C 0.123 3.877 5 C -0.212 4.212 6 C -0.085 4.085 7 C -0.157 4.157 8 C -0.091 4.091 9 C -0.162 4.162 10 C 0.179 3.821 11 H 0.074 0.926 12 O -0.567 6.567 13 C -0.007 4.007 14 H 0.025 0.975 15 C -0.125 4.125 16 C -0.503 4.503 17 H 0.030 0.970 18 C 0.010 3.990 19 N -0.952 5.952 20 Si 0.953 3.047 21 H -0.270 1.270 22 H -0.298 1.298 23 H -0.250 1.250 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.136 0.864 33 H 0.377 0.623 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.819 -18.897 -3.591 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.244 6.244 4 C 0.078 3.922 5 C -0.231 4.231 6 C -0.102 4.102 7 C -0.175 4.175 8 C -0.108 4.108 9 C -0.163 4.163 10 C 0.120 3.880 11 H 0.092 0.908 12 O -0.373 6.373 13 C -0.026 4.026 14 H 0.043 0.957 15 C -0.182 4.182 16 C -0.542 4.542 17 H 0.048 0.952 18 C -0.187 4.187 19 N -0.593 5.593 20 Si 0.781 3.219 21 H -0.196 1.196 22 H -0.226 1.226 23 H -0.174 1.174 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.168 0.832 30 H 0.174 0.826 31 H 0.168 0.832 32 H 0.153 0.847 33 H 0.226 0.774 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.059 -18.684 -3.925 21.131 hybrid contribution -0.007 0.252 1.104 1.132 sum 9.052 -18.431 -2.821 20.727 Atomic orbital electron populations 1.21816 0.92449 1.03982 1.02645 1.23022 0.96366 0.81179 1.02306 1.86249 1.18968 1.30844 1.88305 1.18891 0.83052 0.93624 0.96654 1.21490 0.94766 0.97965 1.08874 1.21316 0.94259 0.98117 0.96551 1.21322 1.00774 0.92019 1.03415 1.21005 0.91235 1.00722 0.97881 1.20163 0.95655 0.93377 1.07109 1.20293 0.91850 0.81941 0.93904 0.90844 1.86518 1.43605 1.50522 1.56699 1.19676 0.95562 0.93584 0.93774 0.95685 1.21940 1.00505 0.97549 0.98229 1.21189 1.27504 1.12196 0.93268 0.95163 1.25859 0.94650 0.95399 1.02742 1.70060 1.34932 1.26264 1.28028 0.85782 0.80198 0.77287 0.78650 1.19612 1.22579 1.17449 0.92974 0.92418 0.87618 0.90575 0.90999 0.83236 0.82623 0.83220 0.84667 0.77416 0.95810 0.93086 0.92835 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 10.28 71.98 0.74 -2.39 16 2 C 0.05 1.01 5.46 71.98 0.39 1.40 16 3 O -0.33 -10.64 6.74 -92.48 -0.62 -11.26 16 4 C 0.12 3.90 5.20 22.51 0.12 4.02 16 5 C -0.21 -5.09 9.04 22.37 0.20 -4.88 16 6 C -0.08 -1.75 10.04 22.25 0.22 -1.53 16 7 C -0.16 -3.56 10.04 22.28 0.22 -3.34 16 8 C -0.09 -2.63 9.30 22.26 0.21 -2.42 16 9 C -0.16 -5.72 4.68 -19.77 -0.09 -5.81 16 10 C 0.18 7.81 2.59 29.85 0.08 7.89 16 11 H 0.07 3.55 7.69 -2.39 -0.02 3.54 16 12 O -0.57 -24.54 12.57 -148.98 -1.87 -26.41 16 13 C -0.01 -0.34 1.66 -11.54 -0.02 -0.36 16 14 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 15 C -0.13 -5.61 7.18 71.98 0.52 -5.09 16 16 C -0.50 -30.19 8.81 25.60 0.23 -29.96 16 17 H 0.03 2.05 7.94 -2.92 -0.02 2.03 16 18 C 0.01 0.58 5.45 84.65 0.46 1.05 16 19 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 20 Si 0.95 46.99 24.37 68.60 1.67 48.66 16 21 H -0.27 -12.73 6.87 99.48 0.68 -12.05 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 23 H -0.25 -11.49 6.53 99.48 0.65 -10.84 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.36 7.66 -2.39 -0.02 1.34 16 28 H 0.07 1.37 7.66 -2.39 -0.02 1.35 16 29 H 0.15 2.68 6.30 -2.91 -0.02 2.66 16 30 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 32 H 0.14 3.52 6.40 -2.91 -0.02 3.50 16 33 H 0.38 13.34 7.33 -74.06 -0.54 12.79 16 34 H 0.02 1.09 3.27 -2.39 -0.01 1.08 16 35 H 0.05 2.32 7.44 -2.39 -0.02 2.31 16 36 H 0.05 2.12 5.67 -2.39 -0.01 2.10 16 37 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -74.28 291.28 3.20 -71.08 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.45 Total: 20.85 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 3.28 Total: -41.43 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.30 Total: -61.49 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -2.50 Total: -37.67 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.67 Total: 48.66 kcal Total: -74.28 3.20 -71.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.671 kcal (2) G-P(sol) polarization free energy of solvation -74.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds