Wall clock time and date at job start Mon Mar 30 2020 06:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47308 * 2 1 4 4 C 1.35896 * 117.00251 * 179.97438 * 3 2 1 5 5 C 1.38753 * 120.05684 * 359.95691 * 4 3 2 6 6 C 1.38122 * 119.94946 * 180.02562 * 5 4 3 7 7 C 1.38295 * 120.05026 * 359.97438 * 6 5 4 8 8 C 1.38242 * 120.11401 * 0.02562 * 7 6 5 9 9 C 1.38169 * 120.05457 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.02482 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46873 * 214.99757 * 10 9 8 12 12 O 1.42888 * 109.47506 * 334.99940 * 10 9 8 13 13 C 1.53000 * 109.47197 * 95.00316 * 10 9 8 14 14 H 1.09001 * 109.47496 * 59.99255 * 13 10 9 15 15 C 1.53000 * 109.47031 * 299.99847 * 13 10 9 16 16 C 1.50693 * 109.47228 * 179.97438 * 13 10 9 17 17 H 1.08000 * 120.00413 * 0.02562 * 16 13 10 18 18 C 1.37886 * 120.00099 * 179.97438 * 16 13 10 19 19 N 1.31510 * 119.99795 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99979 * 180.02562 * 18 16 13 21 21 H 1.48505 * 109.47026 * 59.99790 * 20 18 16 22 22 H 1.48498 * 109.46775 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46759 * 299.99848 * 20 18 16 24 24 H 1.09000 * 109.46922 * 299.99940 * 1 2 3 25 25 H 1.08996 * 109.46726 * 60.00153 * 1 2 3 26 26 H 1.09002 * 109.46827 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47342 * 239.99872 * 2 1 3 28 28 H 1.09001 * 109.47149 * 120.00040 * 2 1 3 29 29 H 1.08002 * 120.02760 * 0.04235 * 5 4 3 30 30 H 1.07997 * 119.97891 * 180.25368 * 6 5 4 31 31 H 1.07997 * 119.93892 * 179.97438 * 7 6 5 32 32 H 1.07998 * 119.97158 * 179.97438 * 8 7 6 33 33 H 0.96705 * 114.00195 * 59.99811 * 12 10 9 34 34 H 1.09006 * 109.46982 * 299.99497 * 15 13 10 35 35 H 1.08997 * 109.47075 * 59.99796 * 15 13 10 36 36 H 1.08998 * 109.47268 * 180.02562 * 15 13 10 37 37 H 0.96997 * 119.99770 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.2000 0.4258 0.0020 6 6 5.5689 0.6094 0.0030 7 6 6.0962 1.8879 0.0022 8 6 5.2552 2.9850 0.0008 9 6 3.8851 2.8066 -0.0003 10 6 2.9689 4.0031 -0.0025 11 1 2.0791 3.7804 0.5864 12 8 3.6481 5.1242 0.5663 13 6 2.5603 4.3300 -1.4402 14 1 2.0422 3.4748 -1.8741 15 6 3.8092 4.6426 -2.2668 16 6 1.6436 5.5261 -1.4423 17 1 1.3792 6.0055 -0.5113 18 6 1.1432 6.0092 -2.6329 19 7 1.4663 5.4264 -3.7666 20 14 0.0074 7.4923 -2.6355 21 1 0.7132 8.6573 -2.0439 22 1 -0.3882 7.8102 -4.0310 23 1 -1.2050 7.1886 -1.8336 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7886 -0.5728 0.0020 30 1 6.2281 -0.2461 0.0000 31 1 7.1669 2.0293 0.0034 32 1 5.6695 3.9824 0.0005 33 1 4.4515 5.3793 0.0924 34 1 4.3274 5.4979 -1.8329 35 1 4.4719 3.7773 -2.2652 36 1 3.5181 4.8760 -3.2909 37 1 1.1146 5.7664 -4.6042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:02 Heat of formation + Delta-G solvation = -73.787384 kcal Electronic energy + Delta-G solvation = -18883.836923 eV Core-core repulsion = 16012.208591 eV Total energy + Delta-G solvation = -2871.628332 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.05458 -37.69998 -36.32248 -33.25402 -31.91981 -30.95062 -29.82671 -29.06716 -25.55028 -24.75317 -23.66451 -21.69015 -21.03627 -19.33529 -18.02171 -16.60717 -15.85823 -15.77157 -15.56056 -15.03645 -14.29794 -14.17916 -13.77140 -13.35581 -13.19112 -12.85236 -12.57046 -12.45463 -11.79703 -11.65978 -11.36686 -11.29563 -10.94011 -10.88787 -10.66535 -10.61926 -10.53875 -10.16240 -10.02762 -9.79036 -8.93865 -8.72268 -8.36374 -8.25164 -7.67768 -5.89654 -3.94079 1.66900 1.78881 3.38835 3.42184 3.46459 3.49866 4.10382 4.52068 4.99533 5.04267 5.07619 5.21796 5.32394 5.35120 5.37754 5.45269 5.57461 5.73023 5.78349 5.92284 5.99221 6.19949 6.22171 6.43735 6.59527 6.66373 6.77166 6.87667 6.92705 7.10571 7.13699 7.41382 7.76934 7.78102 7.99465 8.19732 8.49489 8.61003 9.10037 9.69187 11.16600 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.007549 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.618597 B = 3708.275227 C = 4516.901634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.303 6.303 4 C 0.134 3.866 5 C -0.212 4.212 6 C -0.097 4.097 7 C -0.159 4.159 8 C -0.077 4.077 9 C -0.119 4.119 10 C 0.156 3.844 11 H 0.097 0.903 12 O -0.556 6.556 13 C 0.027 3.973 14 H 0.035 0.965 15 C -0.143 4.143 16 C -0.499 4.499 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.362 0.638 34 H 0.024 0.976 35 H 0.011 0.989 36 H 0.084 0.916 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 -11.062 6.344 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.216 6.216 4 C 0.088 3.912 5 C -0.231 4.231 6 C -0.115 4.115 7 C -0.177 4.177 8 C -0.095 4.095 9 C -0.120 4.120 10 C 0.097 3.903 11 H 0.114 0.886 12 O -0.362 6.362 13 C 0.009 3.991 14 H 0.053 0.947 15 C -0.200 4.200 16 C -0.538 4.538 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.204 1.204 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.210 0.790 34 H 0.043 0.957 35 H 0.030 0.970 36 H 0.103 0.897 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.331 -10.937 6.570 13.474 hybrid contribution -0.015 0.436 -0.616 0.755 sum 4.316 -10.501 5.954 12.820 Atomic orbital electron populations 1.21763 0.92871 1.02270 1.04058 1.22714 0.95954 0.82560 1.00703 1.86188 1.18819 1.28340 1.88296 1.18749 0.82386 0.93416 0.96609 1.21127 0.94445 0.97566 1.09943 1.20771 0.94164 0.97009 0.99587 1.20934 0.99378 0.92538 1.04869 1.20726 0.91958 0.98968 0.97874 1.20409 0.95195 0.94152 1.02251 1.20955 0.91134 0.80148 0.98045 0.88567 1.86503 1.42844 1.50101 1.56714 1.19192 0.94102 0.97482 0.88353 0.94670 1.21854 0.96980 0.96646 1.04533 1.21093 1.26990 1.12789 0.92881 0.92261 1.24952 0.96580 0.97016 0.95665 1.69886 1.45019 1.40980 0.97542 0.86665 0.81299 0.83382 0.76656 1.20341 1.21515 1.20373 0.91523 0.91033 0.90857 0.92369 0.92643 0.86051 0.86497 0.86421 0.85717 0.79030 0.95720 0.96978 0.89700 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 37.16 0.38 -1.41 16 2 C 0.06 0.75 5.46 37.16 0.20 0.95 16 3 O -0.30 -5.52 9.27 -19.41 -0.18 -5.70 16 4 C 0.13 2.44 6.66 -39.22 -0.26 2.18 16 5 C -0.21 -3.22 9.04 -39.43 -0.36 -3.57 16 6 C -0.10 -1.36 10.04 -39.60 -0.40 -1.75 16 7 C -0.16 -2.31 10.04 -39.56 -0.40 -2.71 16 8 C -0.08 -1.30 7.91 -39.61 -0.31 -1.61 16 9 C -0.12 -2.31 4.35 -104.47 -0.45 -2.77 16 10 C 0.16 3.47 2.69 -27.88 -0.08 3.40 16 11 H 0.10 2.27 7.69 -51.93 -0.40 1.87 16 12 O -0.56 -12.00 12.54 -35.23 -0.44 -12.44 16 13 C 0.03 0.70 2.19 -91.78 -0.20 0.50 16 14 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 15 C -0.14 -3.45 8.17 37.16 0.30 -3.14 16 16 C -0.50 -14.11 8.23 -34.44 -0.28 -14.39 16 17 H 0.06 1.70 7.70 -52.49 -0.40 1.30 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 19 N -0.89 -26.11 11.32 55.43 0.63 -25.48 16 20 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 28 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 29 H 0.12 1.52 6.30 -52.49 -0.33 1.19 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.13 1.92 6.41 -52.49 -0.34 1.58 16 33 H 0.36 6.83 5.61 45.56 0.26 7.08 16 34 H 0.02 0.55 6.78 -51.93 -0.35 0.20 16 35 H 0.01 0.25 6.41 -51.93 -0.33 -0.08 16 36 H 0.08 2.30 6.07 -51.93 -0.32 1.99 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 299.63 15.07 4.52 4.52 Total: -1.00 -31.20 299.63 -7.13 -38.33 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.68 Total: 6.63 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -1.94 Total: -22.78 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.63 Total: -25.48 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.62 Total: -18.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.20 -7.13 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.459 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds