Wall clock time and date at job start Mon Mar 30 2020 06:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47308 * 2 1 4 4 C 1.35896 * 117.00251 * 179.97438 * 3 2 1 5 5 C 1.38753 * 120.05684 * 359.95691 * 4 3 2 6 6 C 1.38122 * 119.94946 * 180.02562 * 5 4 3 7 7 C 1.38295 * 120.05026 * 359.97438 * 6 5 4 8 8 C 1.38242 * 120.11401 * 0.02562 * 7 6 5 9 9 C 1.38169 * 120.05457 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.02482 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46873 * 214.99757 * 10 9 8 12 12 O 1.42888 * 109.47506 * 334.99940 * 10 9 8 13 13 C 1.53000 * 109.47197 * 95.00316 * 10 9 8 14 14 H 1.09001 * 109.47496 * 59.99255 * 13 10 9 15 15 C 1.53000 * 109.47031 * 299.99847 * 13 10 9 16 16 C 1.50693 * 109.47228 * 179.97438 * 13 10 9 17 17 H 1.08000 * 120.00413 * 0.02562 * 16 13 10 18 18 C 1.37886 * 120.00099 * 179.97438 * 16 13 10 19 19 N 1.31510 * 119.99795 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99979 * 180.02562 * 18 16 13 21 21 H 1.48505 * 109.47026 * 59.99790 * 20 18 16 22 22 H 1.48498 * 109.46775 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46759 * 299.99848 * 20 18 16 24 24 H 1.09000 * 109.46922 * 299.99940 * 1 2 3 25 25 H 1.08996 * 109.46726 * 60.00153 * 1 2 3 26 26 H 1.09002 * 109.46827 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47342 * 239.99872 * 2 1 3 28 28 H 1.09001 * 109.47149 * 120.00040 * 2 1 3 29 29 H 1.08002 * 120.02760 * 0.04235 * 5 4 3 30 30 H 1.07997 * 119.97891 * 180.25368 * 6 5 4 31 31 H 1.07997 * 119.93892 * 179.97438 * 7 6 5 32 32 H 1.07998 * 119.97158 * 179.97438 * 8 7 6 33 33 H 0.96705 * 114.00195 * 59.99811 * 12 10 9 34 34 H 1.09006 * 109.46982 * 299.99497 * 15 13 10 35 35 H 1.08997 * 109.47075 * 59.99796 * 15 13 10 36 36 H 1.08998 * 109.47268 * 180.02562 * 15 13 10 37 37 H 0.96997 * 119.99770 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.2000 0.4258 0.0020 6 6 5.5689 0.6094 0.0030 7 6 6.0962 1.8879 0.0022 8 6 5.2552 2.9850 0.0008 9 6 3.8851 2.8066 -0.0003 10 6 2.9689 4.0031 -0.0025 11 1 2.0791 3.7804 0.5864 12 8 3.6481 5.1242 0.5663 13 6 2.5603 4.3300 -1.4402 14 1 2.0422 3.4748 -1.8741 15 6 3.8092 4.6426 -2.2668 16 6 1.6436 5.5261 -1.4423 17 1 1.3792 6.0055 -0.5113 18 6 1.1432 6.0092 -2.6329 19 7 1.4663 5.4264 -3.7666 20 14 0.0074 7.4923 -2.6355 21 1 0.7132 8.6573 -2.0439 22 1 -0.3882 7.8102 -4.0310 23 1 -1.2050 7.1886 -1.8336 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7886 -0.5728 0.0020 30 1 6.2281 -0.2461 0.0000 31 1 7.1669 2.0293 0.0034 32 1 5.6695 3.9824 0.0005 33 1 4.4515 5.3793 0.0924 34 1 4.3274 5.4979 -1.8329 35 1 4.4719 3.7773 -2.2652 36 1 3.5181 4.8760 -3.2909 37 1 1.1146 5.7664 -4.6042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:01 Heat of formation + Delta-G solvation = -93.856998 kcal Electronic energy + Delta-G solvation = -18884.707207 eV Core-core repulsion = 16012.208591 eV Total energy + Delta-G solvation = -2872.498616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34534 -39.16063 -37.76699 -35.31043 -33.19206 -32.44511 -31.36957 -30.38920 -27.44406 -26.62928 -24.78587 -23.08058 -22.30768 -21.11804 -19.33559 -18.42585 -17.48608 -17.05505 -16.97620 -16.73025 -15.99849 -15.47414 -15.31559 -14.83999 -14.70869 -14.20897 -14.15917 -13.36903 -13.35920 -13.09531 -12.94367 -12.73854 -12.64814 -12.58655 -12.44700 -12.14967 -12.07976 -11.89392 -11.64192 -11.54171 -10.88104 -10.62490 -10.39130 -9.66770 -8.98585 -8.07230 -6.19963 0.44200 0.57101 1.40141 1.42048 1.49977 2.37592 2.44041 2.87958 3.19137 3.71440 3.87773 3.95654 4.06106 4.14601 4.24928 4.34870 4.43094 4.48537 4.63657 4.72328 4.74224 4.88813 4.93210 4.94188 5.09759 5.16761 5.21610 5.32780 5.45410 5.56623 5.61270 5.66274 5.89541 5.97500 6.13165 6.38460 6.58230 6.87340 6.96823 7.46703 8.97126 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.007549 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.618597 B = 3708.275227 C = 4516.901634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.339 6.339 4 C 0.112 3.888 5 C -0.212 4.212 6 C -0.087 4.087 7 C -0.157 4.157 8 C -0.086 4.086 9 C -0.155 4.155 10 C 0.171 3.829 11 H 0.069 0.931 12 O -0.564 6.564 13 C 0.032 3.968 14 H -0.005 1.005 15 C -0.126 4.126 16 C -0.521 4.521 17 H 0.047 0.953 18 C 0.012 3.988 19 N -0.918 5.918 20 Si 0.953 3.047 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.275 1.275 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.133 0.867 33 H 0.374 0.626 34 H 0.035 0.965 35 H 0.030 0.970 36 H 0.054 0.946 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 -12.339 6.849 15.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.254 6.254 4 C 0.067 3.933 5 C -0.231 4.231 6 C -0.105 4.105 7 C -0.175 4.175 8 C -0.104 4.104 9 C -0.156 4.156 10 C 0.112 3.888 11 H 0.087 0.913 12 O -0.371 6.371 13 C 0.013 3.987 14 H 0.014 0.986 15 C -0.184 4.184 16 C -0.559 4.559 17 H 0.065 0.935 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.779 3.221 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.200 1.200 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.127 0.873 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.166 0.834 30 H 0.175 0.825 31 H 0.170 0.830 32 H 0.151 0.849 33 H 0.223 0.777 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.861 -12.219 7.079 15.290 hybrid contribution -0.461 0.738 -0.747 1.147 sum 5.400 -11.481 6.332 14.180 Atomic orbital electron populations 1.21810 0.92206 1.04127 1.02587 1.23040 0.96598 0.80940 1.02201 1.86154 1.19401 1.31260 1.88541 1.19042 0.82866 0.94050 0.97391 1.21474 0.94887 0.97805 1.08910 1.21306 0.94085 0.98199 0.96869 1.21344 1.00814 0.92004 1.03355 1.20939 0.91130 1.00504 0.97812 1.20212 0.95878 0.93417 1.06129 1.20432 0.91463 0.81831 0.95076 0.91326 1.86454 1.43479 1.50312 1.56853 1.19044 0.93972 0.94909 0.90790 0.98642 1.21622 0.96676 0.97802 1.02254 1.21368 1.28126 1.13856 0.92567 0.93491 1.25703 0.97940 0.99693 0.95284 1.70020 1.45740 1.42140 0.97934 0.85692 0.79379 0.80088 0.76959 1.19675 1.20670 1.20025 0.92128 0.93335 0.87268 0.91431 0.90276 0.83369 0.82456 0.83041 0.84921 0.77704 0.94556 0.95076 0.92754 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 10.28 71.98 0.74 -2.77 16 2 C 0.05 1.21 5.46 71.98 0.39 1.60 16 3 O -0.34 -12.75 9.27 -92.39 -0.86 -13.61 16 4 C 0.11 4.06 6.66 22.51 0.15 4.21 16 5 C -0.21 -5.89 9.04 22.37 0.20 -5.69 16 6 C -0.09 -2.06 10.04 22.26 0.22 -1.84 16 7 C -0.16 -4.01 10.04 22.28 0.22 -3.79 16 8 C -0.09 -2.77 7.91 22.25 0.18 -2.59 16 9 C -0.16 -6.08 4.35 -19.77 -0.09 -6.16 16 10 C 0.17 7.92 2.69 29.85 0.08 8.00 16 11 H 0.07 3.47 7.69 -2.39 -0.02 3.45 16 12 O -0.56 -24.82 12.54 -148.98 -1.87 -26.69 16 13 C 0.03 1.68 2.19 -11.54 -0.03 1.65 16 14 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 15 C -0.13 -6.20 8.17 71.98 0.59 -5.61 16 16 C -0.52 -30.49 8.23 25.60 0.21 -30.28 16 17 H 0.05 2.79 7.70 -2.91 -0.02 2.77 16 18 C 0.01 0.68 5.30 84.66 0.45 1.13 16 19 N -0.92 -54.89 11.32 21.45 0.24 -54.65 16 20 Si 0.95 45.69 29.54 68.60 2.03 47.71 16 21 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.59 7.67 -2.38 -0.02 1.57 16 28 H 0.08 1.64 7.66 -2.39 -0.02 1.63 16 29 H 0.15 3.19 6.30 -2.91 -0.02 3.18 16 30 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 32 H 0.13 3.89 6.41 -2.91 -0.02 3.87 16 33 H 0.37 14.11 5.61 -74.05 -0.42 13.69 16 34 H 0.04 1.64 6.78 -2.38 -0.02 1.63 16 35 H 0.03 1.37 6.41 -2.39 -0.02 1.35 16 36 H 0.05 3.01 6.07 -2.39 -0.01 2.99 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -69.90 299.63 3.52 -66.38 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.65 Total: 22.99 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 3.33 Total: -42.14 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.24 Total: -54.65 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -2.72 Total: -40.30 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -69.90 3.52 -66.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.477 kcal (2) G-P(sol) polarization free energy of solvation -69.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds