Wall clock time and date at job start Mon Mar 30 2020 06:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47430 * 2 1 4 4 C 1.35892 * 117.00392 * 179.97438 * 3 2 1 5 5 C 1.38760 * 120.05415 * 0.02562 * 4 3 2 6 6 C 1.38123 * 119.94204 * 179.97438 * 5 4 3 7 7 C 1.38281 * 120.05920 * 0.02562 * 6 5 4 8 8 C 1.38249 * 120.10916 * 359.74561 * 7 6 5 9 9 C 1.50707 * 119.97216 * 180.25117 * 8 7 6 10 10 H 1.09004 * 109.46787 * 160.24985 * 9 8 7 11 11 O 1.42901 * 109.46811 * 40.25266 * 9 8 7 12 12 C 1.52998 * 109.47166 * 280.25255 * 9 8 7 13 13 H 1.08992 * 109.47337 * 305.00175 * 12 9 8 14 14 C 1.53007 * 109.46914 * 65.00317 * 12 9 8 15 15 C 1.50695 * 109.46733 * 184.99657 * 12 9 8 16 16 H 1.07997 * 120.00723 * 0.02562 * 15 12 9 17 17 C 1.37878 * 119.99847 * 180.02562 * 15 12 9 18 18 N 1.31521 * 120.00075 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 120.00259 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.46920 * 59.99482 * 19 17 15 21 21 H 1.48496 * 109.47244 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46764 * 299.99915 * 19 17 15 23 23 C 1.38161 * 120.05756 * 0.50906 * 8 7 6 24 24 H 1.09003 * 109.47064 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47245 * 299.99806 * 1 2 3 26 26 H 1.09001 * 109.46917 * 60.00078 * 1 2 3 27 27 H 1.09001 * 109.47245 * 240.00194 * 2 1 3 28 28 H 1.08999 * 109.47290 * 120.00590 * 2 1 3 29 29 H 1.07998 * 120.02951 * 359.97438 * 5 4 3 30 30 H 1.08006 * 119.96949 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.94768 * 179.97438 * 7 6 5 32 32 H 0.96703 * 114.00213 * 300.00028 * 11 9 8 33 33 H 1.08996 * 109.47679 * 59.99585 * 14 12 9 34 34 H 1.09006 * 109.46722 * 179.97438 * 14 12 9 35 35 H 1.08996 * 109.46758 * 299.99572 * 14 12 9 36 36 H 0.96994 * 120.00139 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.03267 * 179.77413 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0005 7 6 6.0962 1.8877 0.0011 8 6 5.2552 2.9849 -0.0036 9 6 5.8332 4.3767 -0.0087 10 1 5.0795 5.0818 -0.3592 11 8 6.9660 4.4187 -0.8788 12 6 6.2651 4.7547 1.4095 13 1 5.4217 4.6369 2.0897 14 6 7.4102 3.8425 1.8541 15 6 6.7290 6.1884 1.4279 16 1 6.7166 6.7717 0.5191 17 6 7.1693 6.7554 2.6050 18 7 7.1849 6.0450 3.7117 19 14 7.7437 8.5328 2.6280 20 1 6.6319 9.4179 2.1972 21 1 8.1642 8.8994 4.0042 22 1 8.8923 8.6938 1.7006 23 6 3.8851 2.8066 0.0016 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.7886 -0.5729 0.0005 30 1 6.2281 -0.2462 0.0001 31 1 7.1669 2.0292 0.0015 32 1 7.6781 3.8149 -0.6269 33 1 8.2537 3.9602 1.1738 34 1 7.7182 4.1121 2.8643 35 1 7.0747 2.8055 1.8407 36 1 7.4943 6.4440 4.5398 37 1 3.2284 3.6640 0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:04 Heat of formation + Delta-G solvation = -75.299560 kcal Electronic energy + Delta-G solvation = -18278.072240 eV Core-core repulsion = 15406.378335 eV Total energy + Delta-G solvation = -2871.693905 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.03963 -38.26211 -36.07504 -33.31092 -32.00964 -31.30806 -29.91617 -28.98365 -25.77847 -24.92250 -23.46562 -22.21534 -20.93958 -19.46648 -17.88742 -16.38978 -16.08803 -16.01820 -15.73935 -15.30035 -14.55357 -14.17091 -13.77069 -13.40781 -13.19289 -12.96657 -12.78623 -12.62800 -12.02847 -11.82391 -11.44838 -11.32466 -10.99942 -10.92550 -10.71433 -10.70013 -10.55848 -10.20197 -10.07757 -9.93905 -8.99916 -8.81429 -8.35857 -8.25123 -7.86300 -5.95485 -4.01123 1.64785 1.76410 3.26965 3.36034 3.39816 3.43716 4.07647 4.47680 4.79066 4.82652 5.04083 5.11201 5.14116 5.31340 5.34764 5.41444 5.46467 5.63192 5.67884 5.72673 5.88385 5.88615 6.23643 6.40692 6.47769 6.57806 6.70832 6.81193 6.96734 7.01829 7.07917 7.33656 7.62386 7.68896 7.90816 8.13171 8.41895 8.51748 9.02522 9.63050 11.10526 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032354 B = 0.004990 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.227259 B = 5609.485618 C = 5934.127357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.125 3.875 5 C -0.222 4.222 6 C -0.084 4.084 7 C -0.145 4.145 8 C -0.052 4.052 9 C 0.147 3.853 10 H 0.096 0.904 11 O -0.554 6.554 12 C 0.023 3.977 13 H 0.034 0.966 14 C -0.148 4.148 15 C -0.504 4.504 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.277 1.277 23 C -0.146 4.146 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.364 0.636 33 H 0.027 0.973 34 H 0.086 0.914 35 H 0.018 0.982 36 H 0.260 0.740 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 -13.119 -6.354 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.080 3.920 5 C -0.240 4.240 6 C -0.102 4.102 7 C -0.163 4.163 8 C -0.053 4.053 9 C 0.088 3.912 10 H 0.114 0.886 11 O -0.359 6.359 12 C 0.005 3.995 13 H 0.052 0.948 14 C -0.206 4.206 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.165 4.165 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.212 0.788 33 H 0.046 0.954 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.097 -12.511 -6.461 16.243 hybrid contribution 0.718 0.193 0.537 0.917 sum -7.379 -12.318 -5.924 15.534 Atomic orbital electron populations 1.21771 0.93017 1.02555 1.03541 1.22707 0.95619 0.82514 1.01153 1.86054 1.19501 1.28716 1.89013 1.18916 0.81791 0.94170 0.97111 1.21066 0.94459 0.97422 1.11091 1.20832 0.94171 0.97049 0.98166 1.20884 0.99952 0.91894 1.03564 1.20843 0.92600 0.97995 0.93821 1.21183 0.87171 0.89064 0.93785 0.88642 1.86510 1.28686 1.66643 1.54098 1.19244 0.95505 0.95531 0.89250 0.94778 1.21957 0.98666 0.95842 1.04124 1.21074 1.42570 0.95783 0.94795 0.92226 1.24956 0.95781 0.97773 0.95617 1.69882 1.47779 1.36135 0.99452 0.86635 0.79212 0.85209 0.76799 1.20307 1.21458 1.20287 1.20267 0.94781 0.94693 1.06723 0.90628 0.91488 0.91594 0.92341 0.92241 0.86206 0.86242 0.85900 0.78813 0.95448 0.89574 0.96324 0.93062 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.58 5.46 37.16 0.20 0.78 16 3 O -0.32 -4.72 10.14 -19.40 -0.20 -4.92 16 4 C 0.12 2.02 6.69 -39.21 -0.26 1.76 16 5 C -0.22 -3.19 9.04 -39.43 -0.36 -3.55 16 6 C -0.08 -1.23 10.04 -39.61 -0.40 -1.62 16 7 C -0.14 -2.42 7.29 -39.56 -0.29 -2.71 16 8 C -0.05 -0.98 4.82 -104.64 -0.50 -1.48 16 9 C 0.15 3.11 2.97 -27.88 -0.08 3.03 16 10 H 0.10 2.05 8.00 -51.93 -0.42 1.64 16 11 O -0.55 -11.57 12.84 -35.23 -0.45 -12.02 16 12 C 0.02 0.57 2.13 -91.77 -0.20 0.38 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 14 C -0.15 -3.45 7.70 37.16 0.29 -3.17 16 15 C -0.50 -13.89 8.33 -34.44 -0.29 -14.18 16 16 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.15 -2.62 9.61 -39.43 -0.38 -3.00 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 29 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 30 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.12 1.92 5.85 -52.49 -0.31 1.61 16 32 H 0.36 6.65 5.66 45.56 0.26 6.91 16 33 H 0.03 0.59 6.72 -51.93 -0.35 0.24 16 34 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 35 H 0.02 0.38 5.55 -51.93 -0.29 0.09 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.13 2.23 8.04 -52.49 -0.42 1.81 16 LS Contribution 299.02 15.07 4.51 4.51 Total: -1.00 -30.34 299.02 -7.13 -37.47 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.62 Total: 6.45 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -1.98 Total: -23.06 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.63 Total: -25.01 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.65 Total: -16.94 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.34 -7.13 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.830 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds