Wall clock time and date at job start Mon Mar 30 2020 06:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47430 * 2 1 4 4 C 1.35892 * 117.00392 * 179.97438 * 3 2 1 5 5 C 1.38760 * 120.05415 * 0.02562 * 4 3 2 6 6 C 1.38123 * 119.94204 * 179.97438 * 5 4 3 7 7 C 1.38281 * 120.05920 * 0.02562 * 6 5 4 8 8 C 1.38249 * 120.10916 * 359.74561 * 7 6 5 9 9 C 1.50707 * 119.97216 * 180.25117 * 8 7 6 10 10 H 1.09004 * 109.46787 * 160.24985 * 9 8 7 11 11 O 1.42901 * 109.46811 * 40.25266 * 9 8 7 12 12 C 1.52998 * 109.47166 * 280.25255 * 9 8 7 13 13 H 1.08992 * 109.47337 * 305.00175 * 12 9 8 14 14 C 1.53007 * 109.46914 * 65.00317 * 12 9 8 15 15 C 1.50695 * 109.46733 * 184.99657 * 12 9 8 16 16 H 1.07997 * 120.00723 * 0.02562 * 15 12 9 17 17 C 1.37878 * 119.99847 * 180.02562 * 15 12 9 18 18 N 1.31521 * 120.00075 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 120.00259 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.46920 * 59.99482 * 19 17 15 21 21 H 1.48496 * 109.47244 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46764 * 299.99915 * 19 17 15 23 23 C 1.38161 * 120.05756 * 0.50906 * 8 7 6 24 24 H 1.09003 * 109.47064 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47245 * 299.99806 * 1 2 3 26 26 H 1.09001 * 109.46917 * 60.00078 * 1 2 3 27 27 H 1.09001 * 109.47245 * 240.00194 * 2 1 3 28 28 H 1.08999 * 109.47290 * 120.00590 * 2 1 3 29 29 H 1.07998 * 120.02951 * 359.97438 * 5 4 3 30 30 H 1.08006 * 119.96949 * 180.02562 * 6 5 4 31 31 H 1.08001 * 119.94768 * 179.97438 * 7 6 5 32 32 H 0.96703 * 114.00213 * 300.00028 * 11 9 8 33 33 H 1.08996 * 109.47679 * 59.99585 * 14 12 9 34 34 H 1.09006 * 109.46722 * 179.97438 * 14 12 9 35 35 H 1.08996 * 109.46758 * 299.99572 * 14 12 9 36 36 H 0.96994 * 120.00139 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.03267 * 179.77413 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0005 7 6 6.0962 1.8877 0.0011 8 6 5.2552 2.9849 -0.0036 9 6 5.8332 4.3767 -0.0087 10 1 5.0795 5.0818 -0.3592 11 8 6.9660 4.4187 -0.8788 12 6 6.2651 4.7547 1.4095 13 1 5.4217 4.6369 2.0897 14 6 7.4102 3.8425 1.8541 15 6 6.7290 6.1884 1.4279 16 1 6.7166 6.7717 0.5191 17 6 7.1693 6.7554 2.6050 18 7 7.1849 6.0450 3.7117 19 14 7.7437 8.5328 2.6280 20 1 6.6319 9.4179 2.1972 21 1 8.1642 8.8994 4.0042 22 1 8.8923 8.6938 1.7006 23 6 3.8851 2.8066 0.0016 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.7886 -0.5729 0.0005 30 1 6.2281 -0.2462 0.0001 31 1 7.1669 2.0292 0.0015 32 1 7.6781 3.8149 -0.6269 33 1 8.2537 3.9602 1.1738 34 1 7.7182 4.1121 2.8643 35 1 7.0747 2.8055 1.8407 36 1 7.4943 6.4440 4.5398 37 1 3.2284 3.6640 0.0016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:04 Heat of formation + Delta-G solvation = -94.396143 kcal Electronic energy + Delta-G solvation = -18278.900330 eV Core-core repulsion = 15406.378335 eV Total energy + Delta-G solvation = -2872.521995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.25755 -39.64779 -37.49570 -35.30845 -32.92120 -32.86624 -31.50729 -30.24697 -27.53321 -26.76256 -24.50207 -23.44425 -22.33056 -21.10902 -19.23114 -18.24058 -17.52488 -17.07951 -17.00847 -16.80072 -16.35551 -15.58744 -15.42347 -14.80354 -14.46701 -14.22019 -14.17598 -13.44673 -13.34364 -13.19507 -12.98098 -12.72722 -12.64468 -12.61866 -12.46217 -12.12296 -12.07658 -11.93132 -11.64302 -11.53541 -10.86217 -10.65714 -10.40201 -9.70281 -9.08882 -8.08067 -6.21248 0.38116 0.52048 1.42131 1.43374 1.51279 2.26873 2.44329 2.81521 3.18974 3.77476 3.83405 3.90392 4.07722 4.14976 4.19912 4.33432 4.38374 4.41298 4.55722 4.68295 4.74848 4.87227 4.95032 4.95164 5.06962 5.15747 5.20999 5.33418 5.36013 5.48186 5.59688 5.70618 5.83398 5.89008 6.13146 6.36868 6.51494 6.86312 6.93995 7.46152 8.96119 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032354 B = 0.004990 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.227259 B = 5609.485618 C = 5934.127357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.337 6.337 4 C 0.121 3.879 5 C -0.213 4.213 6 C -0.076 4.076 7 C -0.157 4.157 8 C -0.071 4.071 9 C 0.159 3.841 10 H 0.080 0.920 11 O -0.561 6.561 12 C 0.023 3.977 13 H -0.001 1.001 14 C -0.134 4.134 15 C -0.524 4.524 16 H 0.050 0.950 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.172 4.172 24 H 0.104 0.896 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.132 0.868 32 H 0.376 0.624 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.260 0.740 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 -15.186 -6.972 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.252 6.252 4 C 0.076 3.924 5 C -0.231 4.231 6 C -0.094 4.094 7 C -0.175 4.175 8 C -0.072 4.072 9 C 0.100 3.900 10 H 0.098 0.902 11 O -0.368 6.368 12 C 0.004 3.996 13 H 0.017 0.983 14 C -0.192 4.192 15 C -0.562 4.562 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.779 3.221 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.191 4.191 24 H 0.123 0.877 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.150 0.850 32 H 0.225 0.775 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.043 -14.590 -7.087 18.104 hybrid contribution 0.602 0.739 0.706 1.187 sum -7.441 -13.850 -6.381 16.968 Atomic orbital electron populations 1.21815 0.91528 1.04265 1.03012 1.23100 0.96901 0.80676 1.02420 1.86049 1.18756 1.31660 1.88758 1.18984 0.82857 0.93942 0.96649 1.21479 0.94278 0.98389 1.08993 1.21255 0.94851 0.97194 0.96088 1.21065 1.00214 0.92309 1.03951 1.20551 0.93232 0.96992 0.96419 1.20779 0.86973 0.90870 0.91410 0.90206 1.86472 1.29116 1.67343 1.53905 1.19155 0.94695 0.94815 0.90924 0.98277 1.21754 0.98341 0.96836 1.02228 1.21376 1.42812 0.97415 0.94572 0.93212 1.25692 0.95910 1.01621 0.95299 1.70015 1.48310 1.37607 0.99815 0.85684 0.78814 0.80588 0.76992 1.19931 1.20849 1.19722 1.20302 0.94670 0.95737 1.08351 0.87745 0.92253 0.91935 0.90690 0.91135 0.82711 0.82450 0.85008 0.77506 0.94369 0.92734 0.93894 0.93071 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.04 0.79 5.46 71.98 0.39 1.19 16 3 O -0.34 -9.63 10.14 -92.34 -0.94 -10.57 16 4 C 0.12 3.77 6.69 22.51 0.15 3.92 16 5 C -0.21 -5.44 9.04 22.37 0.20 -5.24 16 6 C -0.08 -1.96 10.04 22.25 0.22 -1.73 16 7 C -0.16 -4.99 7.29 22.28 0.16 -4.83 16 8 C -0.07 -2.69 4.82 -19.88 -0.10 -2.79 16 9 C 0.16 6.93 2.97 29.85 0.09 7.02 16 10 H 0.08 3.64 8.00 -2.39 -0.02 3.62 16 11 O -0.56 -23.53 12.84 -148.98 -1.91 -25.45 16 12 C 0.02 1.16 2.13 -11.54 -0.02 1.14 16 13 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 14 C -0.13 -6.29 7.70 71.98 0.55 -5.73 16 15 C -0.52 -29.62 8.33 25.60 0.21 -29.41 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.74 5.30 84.65 0.45 1.19 16 18 N -0.92 -53.72 11.32 21.45 0.24 -53.47 16 19 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 C -0.17 -6.29 9.61 22.37 0.21 -6.08 16 24 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 28 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 29 H 0.16 2.82 6.30 -2.91 -0.02 2.80 16 30 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.13 3.85 5.85 -2.91 -0.02 3.83 16 32 H 0.38 13.47 5.66 -74.06 -0.42 13.05 16 33 H 0.04 1.65 6.72 -2.39 -0.02 1.64 16 34 H 0.05 2.91 6.07 -2.38 -0.01 2.90 16 35 H 0.04 1.76 5.55 -2.39 -0.01 1.74 16 36 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.12 4.36 8.04 -2.91 -0.02 4.34 16 Total: -1.00 -66.49 299.02 3.34 -63.15 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.65 Total: 22.30 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 3.27 Total: -42.73 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.24 Total: -53.47 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -2.85 Total: -36.01 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -66.49 3.34 -63.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.247 kcal (2) G-P(sol) polarization free energy of solvation -66.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds