Wall clock time and date at job start Mon Mar 30 2020 06:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47338 * 2 1 4 4 C 1.35899 * 116.99864 * 180.02562 * 3 2 1 5 5 C 1.38744 * 120.05962 * 0.02562 * 4 3 2 6 6 C 1.38123 * 119.94541 * 179.97438 * 5 4 3 7 7 C 1.38287 * 120.05390 * 359.97438 * 6 5 4 8 8 C 1.38244 * 120.11305 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.96896 * 180.27455 * 8 7 6 10 10 H 1.08998 * 109.46771 * 204.72581 * 9 8 7 11 11 O 1.42897 * 109.47453 * 324.72127 * 9 8 7 12 12 C 1.52999 * 109.47260 * 84.72696 * 9 8 7 13 13 H 1.09005 * 109.46861 * 299.99931 * 12 9 8 14 14 C 1.53001 * 109.47051 * 59.99379 * 12 9 8 15 15 C 1.50694 * 109.47229 * 179.97438 * 12 9 8 16 16 H 1.08004 * 120.00193 * 0.02562 * 15 12 9 17 17 C 1.37875 * 120.00326 * 179.97438 * 15 12 9 18 18 N 1.31515 * 119.99700 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00458 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46897 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46903 * 119.99836 * 19 17 15 22 22 H 1.48491 * 109.47489 * 240.00233 * 19 17 15 23 23 C 1.38165 * 120.05319 * 359.97438 * 8 7 6 24 24 H 1.09001 * 109.46889 * 60.00091 * 1 2 3 25 25 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47193 * 300.00248 * 1 2 3 27 27 H 1.08997 * 109.47348 * 239.99478 * 2 1 3 28 28 H 1.09001 * 109.46889 * 119.99909 * 2 1 3 29 29 H 1.08001 * 120.02701 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.96991 * 180.02562 * 6 5 4 31 31 H 1.08004 * 119.93990 * 180.02562 * 7 6 5 32 32 H 0.96707 * 113.99694 * 60.00454 * 11 9 8 33 33 H 1.08999 * 109.46793 * 179.97438 * 14 12 9 34 34 H 1.08996 * 109.47300 * 300.00040 * 14 12 9 35 35 H 1.09005 * 109.46837 * 60.00538 * 14 12 9 36 36 H 0.97002 * 120.00272 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.02391 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5689 0.6094 -0.0027 7 6 6.0962 1.8878 -0.0032 8 6 5.2551 2.9850 -0.0022 9 6 5.8332 4.3766 -0.0091 10 1 5.1127 5.0714 0.4224 11 8 7.0355 4.3969 0.7630 12 6 6.1441 4.7927 -1.4482 13 1 6.8647 4.0978 -1.8797 14 6 4.8568 4.7709 -2.2748 15 6 6.7216 6.1845 -1.4551 16 1 6.8541 6.7189 -0.5260 17 6 7.0819 6.7756 -2.6476 18 7 6.9211 6.1247 -3.7790 19 14 7.7971 8.5012 -2.6563 20 1 7.8743 9.0120 -1.2640 21 1 9.1590 8.4696 -3.2476 22 1 6.9273 9.3935 -3.4639 23 6 3.8850 2.8065 -0.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7885 -0.5728 -0.0016 30 1 6.2280 -0.2462 -0.0039 31 1 7.1669 2.0292 -0.0045 32 1 7.7231 3.8007 0.4358 33 1 5.0782 5.0678 -3.2999 34 1 4.4387 3.7644 -2.2698 35 1 4.1362 5.4659 -1.8433 36 1 7.1741 6.5406 -4.6180 37 1 3.2284 3.6640 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:07 Heat of formation + Delta-G solvation = -77.639805 kcal Electronic energy + Delta-G solvation = -18288.291685 eV Core-core repulsion = 15416.496299 eV Total energy + Delta-G solvation = -2871.795386 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.02695 -38.16173 -35.97944 -33.54268 -31.99988 -31.48919 -29.72300 -29.11633 -25.17199 -25.03617 -23.42173 -22.27661 -20.99772 -19.65842 -17.93062 -16.42590 -16.08486 -16.03277 -15.66264 -15.21144 -14.60015 -14.27085 -13.49087 -13.31473 -13.19628 -13.03424 -12.75334 -12.55141 -12.03389 -11.83254 -11.48536 -11.32017 -11.09541 -10.94835 -10.71811 -10.64095 -10.60443 -10.15520 -10.07161 -10.00436 -8.98661 -8.77795 -8.34045 -8.24569 -7.89254 -5.95407 -4.00938 1.65424 1.76351 3.27469 3.32915 3.40916 3.46737 4.07994 4.47866 4.79524 4.83010 5.04362 5.11259 5.14144 5.29615 5.34976 5.39840 5.46023 5.63691 5.67596 5.73045 5.88818 5.88957 6.22734 6.38779 6.50963 6.59299 6.70933 6.87861 6.99676 7.08179 7.15352 7.28235 7.62872 7.74591 7.92054 8.13267 8.41914 8.50977 9.03959 9.63433 11.10591 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.033390 B = 0.005085 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.367358 B = 5504.971846 C = 5910.333443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.125 3.875 5 C -0.223 4.223 6 C -0.081 4.081 7 C -0.152 4.152 8 C -0.049 4.049 9 C 0.146 3.854 10 H 0.096 0.904 11 O -0.553 6.553 12 C 0.025 3.975 13 H 0.029 0.971 14 C -0.138 4.138 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.141 4.141 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.365 0.635 33 H 0.083 0.917 34 H 0.013 0.987 35 H 0.026 0.974 36 H 0.258 0.742 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 -13.020 6.434 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.081 3.919 5 C -0.242 4.242 6 C -0.100 4.100 7 C -0.170 4.170 8 C -0.049 4.049 9 C 0.088 3.912 10 H 0.114 0.886 11 O -0.358 6.358 12 C 0.006 3.994 13 H 0.047 0.953 14 C -0.196 4.196 15 C -0.541 4.541 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.160 4.160 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.211 0.789 33 H 0.102 0.898 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.252 -12.410 6.592 16.296 hybrid contribution 0.714 0.171 -0.595 0.945 sum -7.538 -12.239 5.997 15.575 Atomic orbital electron populations 1.21770 0.93019 1.02548 1.03548 1.22705 0.95624 0.82521 1.01141 1.86061 1.19492 1.28700 1.88996 1.18924 0.81803 0.94179 0.97033 1.21062 0.94459 0.97436 1.11211 1.20812 0.94166 0.96997 0.97980 1.20805 0.99836 0.91984 1.04371 1.20821 0.92701 0.97879 0.93530 1.21216 0.85591 0.89124 0.95317 0.88630 1.86524 1.25601 1.67816 1.55867 1.19289 0.94792 0.97219 0.88072 0.95333 1.21795 0.97021 0.96602 1.04169 1.21158 1.40429 0.99529 0.92973 0.92013 1.24963 0.95835 0.97753 0.95635 1.69910 1.48402 1.37316 0.97613 0.86530 0.78665 0.84709 0.78075 1.19694 1.21158 1.21175 1.20241 0.94765 0.94621 1.06367 0.91487 0.90633 0.91590 0.92245 0.92349 0.86207 0.86244 0.86117 0.78869 0.89808 0.96789 0.95514 0.93191 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.06 0.59 5.46 37.16 0.20 0.79 16 3 O -0.32 -4.74 10.14 -19.42 -0.20 -4.94 16 4 C 0.13 2.04 6.69 -39.22 -0.26 1.77 16 5 C -0.22 -3.21 9.04 -39.44 -0.36 -3.57 16 6 C -0.08 -1.18 10.04 -39.61 -0.40 -1.58 16 7 C -0.15 -2.52 9.33 -39.56 -0.37 -2.89 16 8 C -0.05 -0.91 4.27 -104.65 -0.45 -1.36 16 9 C 0.15 3.09 2.75 -27.88 -0.08 3.01 16 10 H 0.10 2.06 8.05 -51.93 -0.42 1.65 16 11 O -0.55 -11.44 12.73 -35.23 -0.45 -11.89 16 12 C 0.02 0.61 2.07 -91.77 -0.19 0.42 16 13 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 14 C -0.14 -3.35 8.48 37.16 0.31 -3.04 16 15 C -0.50 -13.83 8.23 -34.44 -0.28 -14.11 16 16 H 0.06 1.73 7.70 -52.48 -0.40 1.32 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.14 -2.54 8.22 -39.43 -0.32 -2.86 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.58 7.66 -51.93 -0.40 0.19 16 28 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 29 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.82 6.61 -52.48 -0.35 1.47 16 32 H 0.36 6.41 7.39 45.56 0.34 6.75 16 33 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 34 H 0.01 0.30 6.41 -51.93 -0.33 -0.03 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -30.60 304.18 -7.06 -37.65 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.70 Total: 5.82 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -1.90 Total: -22.75 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.63 Total: -25.04 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.65 Total: -16.83 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.60 -7.06 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.988 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds