Wall clock time and date at job start Mon Mar 30 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46973 * 2 1 4 4 C 1.35898 * 116.99893 * 180.02562 * 3 2 1 5 5 C 1.38751 * 120.05640 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94661 * 180.02562 * 5 4 3 7 7 C 1.38287 * 120.05449 * 0.02562 * 6 5 4 8 8 C 1.38245 * 120.11339 * 359.95814 * 7 6 5 9 9 C 1.50699 * 119.97682 * 179.74460 * 8 7 6 10 10 H 1.08998 * 109.47474 * 159.99864 * 9 8 7 11 11 O 1.42907 * 109.46861 * 39.99750 * 9 8 7 12 12 C 1.53000 * 109.47100 * 280.00139 * 9 8 7 13 13 H 1.08998 * 109.47182 * 59.99546 * 12 9 8 14 14 C 1.52994 * 109.47030 * 299.99690 * 12 9 8 15 15 C 1.50703 * 109.47189 * 179.97438 * 12 9 8 16 16 H 1.08007 * 119.99710 * 0.02562 * 15 12 9 17 17 C 1.37877 * 120.00256 * 179.97438 * 15 12 9 18 18 N 1.31512 * 119.99559 * 0.02562 * 17 15 12 19 19 Si 1.86792 * 120.00029 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47450 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47353 * 120.00522 * 19 17 15 22 22 H 1.48501 * 109.46883 * 240.00207 * 19 17 15 23 23 C 1.38172 * 120.05216 * 0.02562 * 8 7 6 24 24 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46603 * 299.99413 * 1 2 3 26 26 H 1.09000 * 109.47415 * 59.99432 * 1 2 3 27 27 H 1.09004 * 109.47048 * 240.00883 * 2 1 3 28 28 H 1.08995 * 109.47177 * 120.00188 * 2 1 3 29 29 H 1.07999 * 120.02740 * 0.02562 * 5 4 3 30 30 H 1.07998 * 119.97487 * 180.02562 * 6 5 4 31 31 H 1.07997 * 119.94796 * 179.97438 * 7 6 5 32 32 H 0.96695 * 114.00222 * 300.00693 * 11 9 8 33 33 H 1.09000 * 109.46959 * 179.97438 * 14 12 9 34 34 H 1.08998 * 109.47021 * 299.99955 * 14 12 9 35 35 H 1.08996 * 109.47345 * 59.99997 * 14 12 9 36 36 H 0.97003 * 120.00169 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.02512 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5689 0.6095 -0.0016 7 6 6.0962 1.8878 0.0000 8 6 5.2552 2.9850 0.0007 9 6 5.8331 4.3768 0.0082 10 1 5.0821 5.0840 -0.3437 11 8 6.9725 4.4240 -0.8531 12 6 6.2544 4.7464 1.4319 13 1 7.0054 4.0391 1.7838 14 6 5.0346 4.6958 2.3540 15 6 6.8329 6.1379 1.4393 16 1 6.8937 6.7024 0.5205 17 6 7.2837 6.6908 2.6192 18 7 7.2093 6.0036 3.7380 19 14 8.0001 8.4159 2.6285 20 1 7.9721 8.9710 1.2515 21 1 7.1957 9.2812 3.5282 22 1 9.4029 8.3666 3.1132 23 6 3.8850 2.8066 0.0004 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.7886 -0.5727 -0.0024 30 1 6.2281 -0.2460 -0.0029 31 1 7.1669 2.0294 0.0004 32 1 7.6827 3.8187 -0.5994 33 1 5.3348 4.9586 3.3683 34 1 4.2836 5.4030 2.0021 35 1 4.6165 3.6892 2.3485 36 1 7.5267 6.3924 4.5681 37 1 3.2284 3.6641 0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:09 Heat of formation + Delta-G solvation = -77.935623 kcal Electronic energy + Delta-G solvation = -18277.112587 eV Core-core repulsion = 15405.304373 eV Total energy + Delta-G solvation = -2871.808213 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.02628 -38.15805 -35.98191 -33.53048 -32.00377 -31.47513 -29.75925 -29.10759 -25.15711 -25.03995 -23.42328 -22.29309 -21.00918 -19.64966 -17.92368 -16.42520 -16.08978 -16.01822 -15.65728 -15.22980 -14.59630 -14.26784 -13.47116 -13.32425 -13.20757 -13.03521 -12.74920 -12.57103 -12.03463 -11.83744 -11.49804 -11.32391 -11.09018 -10.95028 -10.71509 -10.65287 -10.60656 -10.14580 -10.07318 -10.00030 -8.97671 -8.77827 -8.34855 -8.25543 -7.89690 -5.95450 -4.00921 1.65074 1.76115 3.26979 3.32898 3.40917 3.46777 4.07751 4.47862 4.79099 4.82597 5.04013 5.10996 5.13923 5.30505 5.34718 5.40518 5.46208 5.63220 5.67490 5.72379 5.88077 5.88430 6.22083 6.38702 6.51200 6.59177 6.70881 6.88135 6.99294 7.07575 7.15755 7.28327 7.62422 7.74555 7.92037 8.13200 8.42006 8.51228 9.03971 9.63441 11.10570 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034276 B = 0.005022 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.705448 B = 5574.527976 C = 5924.413291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.125 3.875 5 C -0.223 4.223 6 C -0.081 4.081 7 C -0.151 4.151 8 C -0.048 4.048 9 C 0.146 3.854 10 H 0.095 0.905 11 O -0.553 6.553 12 C 0.025 3.975 13 H 0.029 0.971 14 C -0.137 4.137 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.142 4.142 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.365 0.635 33 H 0.083 0.917 34 H 0.026 0.974 35 H 0.012 0.988 36 H 0.258 0.742 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.249 -12.835 -6.383 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.233 6.233 4 C 0.081 3.919 5 C -0.241 4.241 6 C -0.099 4.099 7 C -0.169 4.169 8 C -0.049 4.049 9 C 0.088 3.912 10 H 0.113 0.887 11 O -0.358 6.358 12 C 0.006 3.994 13 H 0.047 0.953 14 C -0.195 4.195 15 C -0.541 4.541 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.161 4.161 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.211 0.789 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.735 -12.220 -6.502 16.368 hybrid contribution 0.749 0.154 0.563 0.949 sum -7.986 -12.067 -5.939 15.641 Atomic orbital electron populations 1.21770 0.93018 1.02554 1.03540 1.22708 0.95622 0.82515 1.01149 1.86058 1.19499 1.28710 1.89001 1.18926 0.81797 0.94183 0.97028 1.21064 0.94459 0.97436 1.11186 1.20816 0.94165 0.97012 0.97941 1.20813 0.99855 0.91985 1.04242 1.20817 0.92664 0.97894 0.93496 1.21222 0.87048 0.89157 0.93815 0.88692 1.86524 1.28361 1.66297 1.54600 1.19296 0.94628 0.97399 0.88072 0.95310 1.21773 0.97224 0.96438 1.04071 1.21162 1.39345 0.99441 0.94150 0.92014 1.24961 0.95943 0.97655 0.95628 1.69909 1.47467 1.37087 0.98782 0.86530 0.78669 0.84723 0.78056 1.19694 1.21176 1.21159 1.20253 0.94762 0.94609 1.06468 0.90628 0.91494 0.91590 0.92341 0.92239 0.86201 0.86230 0.86103 0.78882 0.89804 0.95513 0.96900 0.93193 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.58 5.46 37.16 0.20 0.79 16 3 O -0.32 -4.72 10.14 -19.42 -0.20 -4.92 16 4 C 0.13 2.03 6.69 -39.22 -0.26 1.77 16 5 C -0.22 -3.21 9.04 -39.43 -0.36 -3.56 16 6 C -0.08 -1.18 10.04 -39.61 -0.40 -1.58 16 7 C -0.15 -2.51 9.32 -39.56 -0.37 -2.88 16 8 C -0.05 -0.90 4.08 -104.64 -0.43 -1.32 16 9 C 0.15 3.09 2.74 -27.88 -0.08 3.02 16 10 H 0.10 2.05 8.00 -51.93 -0.42 1.64 16 11 O -0.55 -11.46 12.78 -35.23 -0.45 -11.91 16 12 C 0.02 0.61 2.06 -91.77 -0.19 0.42 16 13 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 14 C -0.14 -3.34 8.56 37.15 0.32 -3.02 16 15 C -0.50 -13.83 8.23 -34.44 -0.28 -14.11 16 16 H 0.06 1.73 7.70 -52.48 -0.40 1.32 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -25.65 11.32 55.43 0.63 -25.02 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.14 -2.55 8.62 -39.43 -0.34 -2.89 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 29 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.84 6.77 -52.49 -0.36 1.48 16 32 H 0.36 6.42 7.50 45.56 0.34 6.76 16 33 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.01 0.27 6.62 -51.93 -0.34 -0.07 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 37 H 0.13 2.24 8.04 -52.49 -0.42 1.82 16 LS Contribution 304.91 15.07 4.59 4.59 Total: -1.00 -30.59 304.91 -7.05 -37.64 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.71 Total: 5.76 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -1.89 Total: -22.71 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.63 Total: -25.02 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.65 Total: -16.83 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.59 -7.05 -37.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.292 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds