Wall clock time and date at job start Mon Mar 30 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46973 * 2 1 4 4 C 1.35898 * 116.99893 * 180.02562 * 3 2 1 5 5 C 1.38751 * 120.05640 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94661 * 180.02562 * 5 4 3 7 7 C 1.38287 * 120.05449 * 0.02562 * 6 5 4 8 8 C 1.38245 * 120.11339 * 359.95814 * 7 6 5 9 9 C 1.50699 * 119.97682 * 179.74460 * 8 7 6 10 10 H 1.08998 * 109.47474 * 159.99864 * 9 8 7 11 11 O 1.42907 * 109.46861 * 39.99750 * 9 8 7 12 12 C 1.53000 * 109.47100 * 280.00139 * 9 8 7 13 13 H 1.08998 * 109.47182 * 59.99546 * 12 9 8 14 14 C 1.52994 * 109.47030 * 299.99690 * 12 9 8 15 15 C 1.50703 * 109.47189 * 179.97438 * 12 9 8 16 16 H 1.08007 * 119.99710 * 0.02562 * 15 12 9 17 17 C 1.37877 * 120.00256 * 179.97438 * 15 12 9 18 18 N 1.31512 * 119.99559 * 0.02562 * 17 15 12 19 19 Si 1.86792 * 120.00029 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47450 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47353 * 120.00522 * 19 17 15 22 22 H 1.48501 * 109.46883 * 240.00207 * 19 17 15 23 23 C 1.38172 * 120.05216 * 0.02562 * 8 7 6 24 24 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46603 * 299.99413 * 1 2 3 26 26 H 1.09000 * 109.47415 * 59.99432 * 1 2 3 27 27 H 1.09004 * 109.47048 * 240.00883 * 2 1 3 28 28 H 1.08995 * 109.47177 * 120.00188 * 2 1 3 29 29 H 1.07999 * 120.02740 * 0.02562 * 5 4 3 30 30 H 1.07998 * 119.97487 * 180.02562 * 6 5 4 31 31 H 1.07997 * 119.94796 * 179.97438 * 7 6 5 32 32 H 0.96695 * 114.00222 * 300.00693 * 11 9 8 33 33 H 1.09000 * 109.46959 * 179.97438 * 14 12 9 34 34 H 1.08998 * 109.47021 * 299.99955 * 14 12 9 35 35 H 1.08996 * 109.47345 * 59.99997 * 14 12 9 36 36 H 0.97003 * 120.00169 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.02512 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5689 0.6095 -0.0016 7 6 6.0962 1.8878 0.0000 8 6 5.2552 2.9850 0.0007 9 6 5.8331 4.3768 0.0082 10 1 5.0821 5.0840 -0.3437 11 8 6.9725 4.4240 -0.8531 12 6 6.2544 4.7464 1.4319 13 1 7.0054 4.0391 1.7838 14 6 5.0346 4.6958 2.3540 15 6 6.8329 6.1379 1.4393 16 1 6.8937 6.7024 0.5205 17 6 7.2837 6.6908 2.6192 18 7 7.2093 6.0036 3.7380 19 14 8.0001 8.4159 2.6285 20 1 7.9721 8.9710 1.2515 21 1 7.1957 9.2812 3.5282 22 1 9.4029 8.3666 3.1132 23 6 3.8850 2.8066 0.0004 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.7886 -0.5727 -0.0024 30 1 6.2281 -0.2460 -0.0029 31 1 7.1669 2.0294 0.0004 32 1 7.6827 3.8187 -0.5994 33 1 5.3348 4.9586 3.3683 34 1 4.2836 5.4030 2.0021 35 1 4.6165 3.6892 2.3485 36 1 7.5267 6.3924 4.5681 37 1 3.2284 3.6641 0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:09 Heat of formation + Delta-G solvation = -97.251784 kcal Electronic energy + Delta-G solvation = -18277.950199 eV Core-core repulsion = 15405.304373 eV Total energy + Delta-G solvation = -2872.645825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22730 -39.51994 -37.41658 -35.50116 -33.19159 -32.83526 -31.35973 -30.29283 -27.17433 -26.66566 -24.47081 -23.52523 -22.46918 -21.23210 -19.26215 -18.28548 -17.41745 -17.01776 -16.93255 -16.86580 -16.30337 -15.81322 -15.01550 -14.68091 -14.53577 -14.24572 -14.20058 -13.48334 -13.35979 -13.22817 -12.97587 -12.86553 -12.65231 -12.57936 -12.44772 -12.14489 -12.09554 -11.96329 -11.69301 -11.53082 -10.86242 -10.63332 -10.41028 -9.67587 -9.11280 -8.08111 -6.20776 0.39017 0.52532 1.40438 1.42804 1.54916 2.27359 2.44774 2.82273 3.19046 3.77997 3.84144 3.90763 4.08090 4.15550 4.19612 4.30806 4.38869 4.42087 4.54344 4.71753 4.72530 4.89780 4.95599 4.98937 5.07495 5.15956 5.21516 5.26284 5.36972 5.49870 5.60222 5.69450 5.83404 5.92746 6.06160 6.36421 6.51963 6.86117 6.96953 7.46768 8.96612 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034276 B = 0.005022 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.705448 B = 5574.527976 C = 5924.413291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.337 6.337 4 C 0.121 3.879 5 C -0.214 4.214 6 C -0.075 4.075 7 C -0.165 4.165 8 C -0.067 4.067 9 C 0.159 3.841 10 H 0.082 0.918 11 O -0.563 6.563 12 C 0.027 3.973 13 H 0.007 0.993 14 C -0.123 4.123 15 C -0.520 4.520 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.953 3.047 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.279 1.279 23 C -0.165 4.165 24 H 0.104 0.896 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.129 0.871 32 H 0.377 0.623 33 H 0.055 0.945 34 H 0.025 0.975 35 H 0.027 0.973 36 H 0.260 0.740 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 -14.662 -6.888 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.251 6.251 4 C 0.076 3.924 5 C -0.233 4.233 6 C -0.092 4.092 7 C -0.183 4.183 8 C -0.068 4.068 9 C 0.100 3.900 10 H 0.100 0.900 11 O -0.369 6.369 12 C 0.008 3.992 13 H 0.025 0.975 14 C -0.181 4.181 15 C -0.558 4.558 16 H 0.069 0.931 17 C -0.185 4.185 18 N -0.558 5.558 19 Si 0.779 3.221 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.205 1.205 23 C -0.183 4.183 24 H 0.122 0.878 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.172 0.828 30 H 0.174 0.826 31 H 0.147 0.853 32 H 0.226 0.774 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.036 -14.060 -7.013 18.125 hybrid contribution 0.777 0.616 0.699 1.213 sum -8.258 -13.444 -6.314 16.995 Atomic orbital electron populations 1.21814 0.91520 1.04247 1.03028 1.23097 0.96904 0.80707 1.02386 1.86053 1.18732 1.31601 1.88749 1.18996 0.82843 0.93983 0.96600 1.21472 0.94246 0.98440 1.09117 1.21223 0.94867 0.97118 0.96024 1.21034 1.00206 0.92505 1.04529 1.20519 0.93294 0.96840 0.96131 1.20831 0.86884 0.90960 0.91367 0.90021 1.86472 1.28887 1.67071 1.54506 1.19202 0.93946 0.95584 0.90464 0.97451 1.21573 0.97109 0.97157 1.02217 1.21424 1.39748 1.00824 0.93822 0.93111 1.25686 0.96313 1.01223 0.95320 1.70026 1.48055 1.38555 0.99196 0.85576 0.78078 0.80408 0.78008 1.19506 1.20679 1.20519 1.20260 0.94522 0.95593 1.07964 0.87788 0.92237 0.91913 0.90729 0.91172 0.82769 0.82600 0.85282 0.77445 0.92572 0.95619 0.95437 0.93087 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.28 71.98 0.74 -1.36 16 2 C 0.04 0.79 5.46 71.98 0.39 1.18 16 3 O -0.34 -9.51 10.14 -92.40 -0.94 -10.44 16 4 C 0.12 3.74 6.69 22.51 0.15 3.89 16 5 C -0.21 -5.48 9.04 22.37 0.20 -5.28 16 6 C -0.07 -1.94 10.04 22.25 0.22 -1.71 16 7 C -0.16 -5.28 9.32 22.28 0.21 -5.07 16 8 C -0.07 -2.52 4.08 -19.88 -0.08 -2.60 16 9 C 0.16 6.86 2.74 29.85 0.08 6.94 16 10 H 0.08 3.68 8.00 -2.39 -0.02 3.66 16 11 O -0.56 -23.62 12.78 -148.98 -1.90 -25.52 16 12 C 0.03 1.35 2.06 -11.54 -0.02 1.33 16 13 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 14 C -0.12 -6.13 8.56 71.98 0.62 -5.51 16 15 C -0.52 -29.22 8.23 25.60 0.21 -29.01 16 16 H 0.05 2.90 7.70 -2.91 -0.02 2.88 16 17 C 0.01 0.71 5.30 84.66 0.45 1.16 16 18 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 19 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 C -0.16 -5.92 8.62 22.37 0.19 -5.73 16 24 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.12 7.66 -2.39 -0.02 1.11 16 28 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 29 H 0.15 2.83 6.30 -2.91 -0.02 2.81 16 30 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.13 3.79 6.77 -2.91 -0.02 3.77 16 32 H 0.38 13.37 7.50 -74.06 -0.56 12.81 16 33 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 34 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.03 1.24 6.62 -2.39 -0.02 1.23 16 36 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.12 4.31 8.04 -2.91 -0.02 4.28 16 Total: -1.00 -66.12 304.91 3.30 -62.82 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.50 Total: 21.53 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 3.36 Total: -41.76 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.24 Total: -53.30 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -2.84 Total: -35.96 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -66.12 3.30 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.429 kcal (2) G-P(sol) polarization free energy of solvation -66.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds