Wall clock time and date at job start Mon Mar 30 2020 06:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.47293 * 2 1 4 4 C 1.35900 * 117.00157 * 180.02562 * 3 2 1 5 5 C 1.38753 * 120.05162 * 0.02839 * 4 3 2 6 6 C 1.38130 * 119.94056 * 179.97438 * 5 4 3 7 7 C 1.38279 * 120.05349 * 359.74881 * 6 5 4 8 8 C 1.38247 * 120.11766 * 0.50368 * 7 6 5 9 9 C 1.50692 * 119.97659 * 179.76851 * 8 7 6 10 10 H 1.08996 * 109.47208 * 204.72868 * 9 8 7 11 11 O 1.42903 * 109.47191 * 324.72439 * 9 8 7 12 12 C 1.53001 * 109.47194 * 84.72461 * 9 8 7 13 13 H 1.09007 * 109.46552 * 59.99898 * 12 9 8 14 14 C 1.52996 * 109.47231 * 300.00281 * 12 9 8 15 15 C 1.50692 * 109.47194 * 179.97438 * 12 9 8 16 16 H 1.08004 * 120.00091 * 5.59766 * 15 12 9 17 17 C 1.37885 * 120.00208 * 185.60077 * 15 12 9 18 18 N 1.31513 * 119.99858 * 196.68693 * 17 15 12 19 19 Si 1.86799 * 119.99758 * 16.68526 * 17 15 12 20 20 H 1.48502 * 109.47237 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.47159 * 60.00241 * 19 17 15 22 22 H 1.48507 * 109.47121 * 300.00215 * 19 17 15 23 23 C 1.38170 * 120.04926 * 359.49838 * 8 7 6 24 24 H 1.09002 * 109.46717 * 299.99541 * 1 2 3 25 25 H 1.08991 * 109.47343 * 59.99477 * 1 2 3 26 26 H 1.08995 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46717 * 240.00459 * 2 1 3 28 28 H 1.08999 * 109.47053 * 120.00481 * 2 1 3 29 29 H 1.08004 * 120.03366 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.96624 * 180.02562 * 6 5 4 31 31 H 1.08003 * 119.94391 * 180.27663 * 7 6 5 32 32 H 0.96708 * 113.99573 * 60.00288 * 11 9 8 33 33 H 1.09004 * 109.47268 * 306.64178 * 14 12 9 34 34 H 1.09000 * 109.47586 * 66.63850 * 14 12 9 35 35 H 1.09004 * 109.47217 * 186.64240 * 14 12 9 36 36 H 0.96995 * 120.00720 * 355.34504 * 18 17 15 37 37 H 1.07998 * 120.02189 * 180.27776 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1999 0.4257 -0.0017 6 6 5.5690 0.6093 -0.0027 7 6 6.0962 1.8876 -0.0080 8 6 5.2553 2.9849 -0.0016 9 6 5.8333 4.3766 -0.0020 10 1 5.1129 5.0693 0.4328 11 8 7.0358 4.3931 0.7699 12 6 6.1440 4.7993 -1.4393 13 1 5.2267 4.7866 -2.0280 14 6 7.1552 3.8268 -2.0497 15 6 6.7214 6.1912 -1.4398 16 1 6.9380 6.6864 -0.5047 17 6 6.9733 6.8327 -2.6340 18 7 7.7632 7.8839 -2.6620 19 14 6.1927 6.2087 -4.2122 20 1 6.6195 7.0651 -5.3479 21 1 4.7139 6.2551 -4.0850 22 1 6.6247 4.8093 -4.4585 23 6 3.8851 2.8065 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.7886 -0.5730 -0.0017 30 1 6.2280 -0.2463 -0.0040 31 1 7.1669 2.0292 -0.0133 32 1 7.7233 3.7985 0.4397 33 1 8.0252 3.7504 -1.3975 34 1 6.6951 2.8447 -2.1580 35 1 7.4658 4.1925 -3.0284 36 1 8.1145 8.2488 -1.8348 37 1 3.2286 3.6640 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:12 Heat of formation + Delta-G solvation = -75.421157 kcal Electronic energy + Delta-G solvation = -18376.201612 eV Core-core repulsion = 15504.502434 eV Total energy + Delta-G solvation = -2871.699178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.16224 -38.40831 -36.21432 -33.33514 -32.09111 -31.54870 -30.35048 -29.18694 -25.97204 -24.58790 -23.46119 -22.31420 -20.95364 -19.38739 -18.05203 -17.29904 -16.26331 -16.17715 -15.89482 -15.49578 -14.41320 -14.34272 -13.69057 -13.48103 -13.36115 -13.15576 -12.82099 -12.68033 -12.21604 -11.85455 -11.73974 -11.66148 -11.39991 -11.17374 -10.88158 -10.77108 -10.43929 -10.17601 -9.98169 -9.71548 -9.19497 -8.80991 -8.50871 -8.14188 -8.00156 -6.38747 -3.99232 1.51769 1.63759 3.17284 3.40713 3.45523 3.62973 3.94932 4.52873 4.71896 4.74168 4.93667 5.01252 5.04349 5.20382 5.25585 5.31430 5.36051 5.55115 5.56531 5.61884 5.75237 5.81403 6.10875 6.13069 6.25083 6.37807 6.43751 6.58862 6.69133 6.73678 6.88233 7.00320 7.14935 7.45075 7.51381 8.12562 8.37683 8.47594 9.01015 9.68723 11.01055 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026966 B = 0.005758 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.099356 B = 4861.552221 C = 5336.993308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.127 3.873 5 C -0.221 4.221 6 C -0.082 4.082 7 C -0.147 4.147 8 C -0.056 4.056 9 C 0.158 3.842 10 H 0.099 0.901 11 O -0.549 6.549 12 C -0.007 4.007 13 H 0.028 0.972 14 C -0.156 4.156 15 C -0.589 4.589 16 H 0.062 0.938 17 C 0.029 3.971 18 N -0.910 5.910 19 Si 1.044 2.956 20 H -0.287 1.287 21 H -0.284 1.284 22 H -0.275 1.275 23 C -0.147 4.147 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.364 0.636 33 H 0.041 0.959 34 H 0.028 0.972 35 H 0.057 0.943 36 H 0.267 0.733 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 -17.748 4.439 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.082 3.918 5 C -0.240 4.240 6 C -0.100 4.100 7 C -0.165 4.165 8 C -0.057 4.057 9 C 0.099 3.901 10 H 0.117 0.883 11 O -0.355 6.355 12 C -0.026 4.026 13 H 0.046 0.954 14 C -0.213 4.213 15 C -0.627 4.627 16 H 0.080 0.920 17 C -0.176 4.176 18 N -0.545 5.545 19 Si 0.873 3.127 20 H -0.213 1.213 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.166 4.166 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.212 0.788 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.265 -16.908 3.145 20.028 hybrid contribution 0.412 -0.984 1.264 1.654 sum -9.853 -17.893 4.408 20.896 Atomic orbital electron populations 1.21772 0.92935 1.02618 1.03582 1.22723 0.95695 0.82407 1.01180 1.86064 1.19403 1.28828 1.88930 1.18917 0.81881 0.94124 0.96873 1.21092 0.94444 0.97506 1.10933 1.20838 0.94197 0.97021 0.97955 1.20847 0.99881 0.91920 1.03881 1.20869 0.92725 0.97948 0.94112 1.20915 0.85831 0.89033 0.94332 0.88312 1.86555 1.25434 1.68085 1.55376 1.19594 0.95403 0.96699 0.90897 0.95376 1.22342 0.99700 0.97688 1.01559 1.21917 1.46538 0.98971 0.95238 0.91962 1.25727 0.94123 0.95761 1.01945 1.70841 1.27657 1.25369 1.30602 0.84056 0.76526 0.76009 0.76079 1.21310 1.21055 1.20168 1.20262 0.94735 0.94813 1.06780 0.91551 0.91475 0.90571 0.92221 0.92280 0.86082 0.86134 0.86039 0.78842 0.93982 0.95266 0.92452 0.92240 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.54 5.46 37.16 0.20 0.75 16 3 O -0.32 -4.47 10.14 -19.43 -0.20 -4.67 16 4 C 0.13 1.94 6.69 -39.22 -0.26 1.68 16 5 C -0.22 -2.98 9.04 -39.43 -0.36 -3.33 16 6 C -0.08 -1.11 10.04 -39.61 -0.40 -1.51 16 7 C -0.15 -2.30 7.37 -39.56 -0.29 -2.59 16 8 C -0.06 -0.99 4.62 -104.65 -0.48 -1.48 16 9 C 0.16 3.26 3.02 -27.89 -0.08 3.17 16 10 H 0.10 2.09 8.05 -51.93 -0.42 1.67 16 11 O -0.55 -11.44 12.63 -35.23 -0.44 -11.88 16 12 C -0.01 -0.16 1.77 -91.78 -0.16 -0.32 16 13 H 0.03 0.67 6.81 -51.93 -0.35 0.32 16 14 C -0.16 -3.31 7.58 37.16 0.28 -3.03 16 15 C -0.59 -16.53 8.52 -34.44 -0.29 -16.82 16 16 H 0.06 1.92 7.87 -52.48 -0.41 1.51 16 17 C 0.03 0.84 5.30 -17.82 -0.09 0.74 16 18 N -0.91 -28.24 13.70 55.43 0.76 -27.48 16 19 Si 1.04 25.48 26.27 -169.99 -4.47 21.01 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.21 5.72 56.52 0.32 -5.89 16 23 C -0.15 -2.51 9.62 -39.43 -0.38 -2.88 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 28 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 29 H 0.12 1.29 6.30 -52.48 -0.33 0.96 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.75 6.18 -52.48 -0.32 1.43 16 32 H 0.36 6.53 5.54 45.56 0.25 6.78 16 33 H 0.04 0.84 6.40 -51.93 -0.33 0.50 16 34 H 0.03 0.55 6.41 -51.93 -0.33 0.21 16 35 H 0.06 1.31 4.80 -51.93 -0.25 1.06 16 36 H 0.27 8.31 8.73 -40.82 -0.36 7.95 16 37 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 294.94 15.07 4.44 4.44 Total: -1.00 -31.87 294.94 -6.48 -38.35 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.64 Total: 6.64 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -1.94 Total: -26.41 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 0.76 Total: -27.48 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.64 Total: -16.56 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -4.47 Total: 21.01 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.87 -6.48 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.066 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds