Wall clock time and date at job start Mon Mar 30 2020 06:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42898 * 109.47293 * 2 1 4 4 C 1.35900 * 117.00157 * 180.02562 * 3 2 1 5 5 C 1.38753 * 120.05162 * 0.02839 * 4 3 2 6 6 C 1.38130 * 119.94056 * 179.97438 * 5 4 3 7 7 C 1.38279 * 120.05349 * 359.74881 * 6 5 4 8 8 C 1.38247 * 120.11766 * 0.50368 * 7 6 5 9 9 C 1.50692 * 119.97659 * 179.76851 * 8 7 6 10 10 H 1.08996 * 109.47208 * 204.72868 * 9 8 7 11 11 O 1.42903 * 109.47191 * 324.72439 * 9 8 7 12 12 C 1.53001 * 109.47194 * 84.72461 * 9 8 7 13 13 H 1.09007 * 109.46552 * 59.99898 * 12 9 8 14 14 C 1.52996 * 109.47231 * 300.00281 * 12 9 8 15 15 C 1.50692 * 109.47194 * 179.97438 * 12 9 8 16 16 H 1.08004 * 120.00091 * 5.59766 * 15 12 9 17 17 C 1.37885 * 120.00208 * 185.60077 * 15 12 9 18 18 N 1.31513 * 119.99858 * 196.68693 * 17 15 12 19 19 Si 1.86799 * 119.99758 * 16.68526 * 17 15 12 20 20 H 1.48502 * 109.47237 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.47159 * 60.00241 * 19 17 15 22 22 H 1.48507 * 109.47121 * 300.00215 * 19 17 15 23 23 C 1.38170 * 120.04926 * 359.49838 * 8 7 6 24 24 H 1.09002 * 109.46717 * 299.99541 * 1 2 3 25 25 H 1.08991 * 109.47343 * 59.99477 * 1 2 3 26 26 H 1.08995 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46717 * 240.00459 * 2 1 3 28 28 H 1.08999 * 109.47053 * 120.00481 * 2 1 3 29 29 H 1.08004 * 120.03366 * 359.97438 * 5 4 3 30 30 H 1.08002 * 119.96624 * 180.02562 * 6 5 4 31 31 H 1.08003 * 119.94391 * 180.27663 * 7 6 5 32 32 H 0.96708 * 113.99573 * 60.00288 * 11 9 8 33 33 H 1.09004 * 109.47268 * 306.64178 * 14 12 9 34 34 H 1.09000 * 109.47586 * 66.63850 * 14 12 9 35 35 H 1.09004 * 109.47217 * 186.64240 * 14 12 9 36 36 H 0.96995 * 120.00720 * 355.34504 * 18 17 15 37 37 H 1.07998 * 120.02189 * 180.27776 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1999 0.4257 -0.0017 6 6 5.5690 0.6093 -0.0027 7 6 6.0962 1.8876 -0.0080 8 6 5.2553 2.9849 -0.0016 9 6 5.8333 4.3766 -0.0020 10 1 5.1129 5.0693 0.4328 11 8 7.0358 4.3931 0.7699 12 6 6.1440 4.7993 -1.4393 13 1 5.2267 4.7866 -2.0280 14 6 7.1552 3.8268 -2.0497 15 6 6.7214 6.1912 -1.4398 16 1 6.9380 6.6864 -0.5047 17 6 6.9733 6.8327 -2.6340 18 7 7.7632 7.8839 -2.6620 19 14 6.1927 6.2087 -4.2122 20 1 6.6195 7.0651 -5.3479 21 1 4.7139 6.2551 -4.0850 22 1 6.6247 4.8093 -4.4585 23 6 3.8851 2.8065 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.7886 -0.5730 -0.0017 30 1 6.2280 -0.2463 -0.0040 31 1 7.1669 2.0292 -0.0133 32 1 7.7233 3.7985 0.4397 33 1 8.0252 3.7504 -1.3975 34 1 6.6951 2.8447 -2.1580 35 1 7.4658 4.1925 -3.0284 36 1 8.1145 8.2488 -1.8348 37 1 3.2286 3.6640 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:11 Heat of formation + Delta-G solvation = -97.338059 kcal Electronic energy + Delta-G solvation = -18377.152000 eV Core-core repulsion = 15504.502434 eV Total energy + Delta-G solvation = -2872.649566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.30309 -39.73139 -37.56128 -35.36064 -33.29059 -32.88501 -31.80490 -30.30325 -27.52822 -26.44743 -24.47347 -23.45296 -22.25679 -21.04520 -19.65707 -19.04699 -17.60838 -17.13858 -17.01904 -16.77467 -16.08341 -15.69024 -15.53222 -14.77296 -14.56957 -14.28087 -14.11545 -13.90006 -13.48228 -13.40578 -13.10858 -12.95693 -12.74338 -12.50647 -12.31321 -12.07416 -11.87424 -11.69930 -11.59320 -11.52759 -10.91923 -10.82594 -10.36720 -9.76733 -9.12671 -8.69838 -6.31733 0.34300 0.49428 1.44849 1.52218 1.71267 2.25296 2.49227 2.77716 3.09566 3.68741 3.74772 3.87653 4.07443 4.12274 4.16738 4.27437 4.33417 4.38504 4.42260 4.53412 4.63775 4.71532 4.88321 4.94803 4.95890 5.03286 5.08955 5.20507 5.29014 5.35610 5.47852 5.58086 5.73999 5.82976 6.05582 6.10131 6.49727 6.63224 6.85177 7.45187 8.67644 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026966 B = 0.005758 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.099356 B = 4861.552221 C = 5336.993308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.337 6.337 4 C 0.123 3.877 5 C -0.211 4.211 6 C -0.073 4.073 7 C -0.157 4.157 8 C -0.072 4.072 9 C 0.164 3.836 10 H 0.077 0.923 11 O -0.564 6.564 12 C -0.009 4.009 13 H 0.027 0.973 14 C -0.147 4.147 15 C -0.588 4.588 16 H 0.017 0.983 17 C -0.023 4.023 18 N -0.944 5.944 19 Si 1.082 2.918 20 H -0.291 1.291 21 H -0.269 1.269 22 H -0.240 1.240 23 C -0.171 4.171 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.132 0.868 32 H 0.376 0.624 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.250 0.750 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 -21.921 3.761 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.252 6.252 4 C 0.077 3.923 5 C -0.230 4.230 6 C -0.091 4.091 7 C -0.175 4.175 8 C -0.072 4.072 9 C 0.105 3.895 10 H 0.095 0.905 11 O -0.372 6.372 12 C -0.028 4.028 13 H 0.045 0.955 14 C -0.205 4.205 15 C -0.626 4.626 16 H 0.035 0.965 17 C -0.220 4.220 18 N -0.580 5.580 19 Si 0.904 3.096 20 H -0.217 1.217 21 H -0.195 1.195 22 H -0.164 1.164 23 C -0.190 4.190 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.150 0.850 32 H 0.226 0.774 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.222 -21.110 2.494 24.037 hybrid contribution 0.634 0.266 1.616 1.756 sum -10.587 -20.844 4.110 23.737 Atomic orbital electron populations 1.21817 0.91636 1.04240 1.03007 1.23099 0.96829 0.80639 1.02477 1.86058 1.18778 1.31673 1.88705 1.18977 0.82868 0.93904 0.96510 1.21501 0.94293 0.98417 1.08740 1.21247 0.94800 0.97150 0.95865 1.21034 1.00190 0.92222 1.04039 1.20455 0.93284 0.96506 0.96991 1.20595 0.85493 0.91131 0.92262 0.90520 1.86519 1.26107 1.68883 1.55673 1.19549 0.95602 0.94469 0.93198 0.95467 1.22189 0.99379 0.98305 1.00581 1.22100 1.45764 1.01392 0.93312 0.96467 1.27164 0.93782 0.95286 1.05735 1.70978 1.30170 1.27249 1.29632 0.83600 0.76516 0.77364 0.72100 1.21724 1.19464 1.16440 1.20277 0.94572 0.95806 1.08316 0.92069 0.92156 0.87807 0.90897 0.90787 0.82699 0.82385 0.85031 0.77450 0.93121 0.92213 0.93821 0.94097 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.28 71.98 0.74 -1.16 16 2 C 0.04 0.71 5.46 71.98 0.39 1.11 16 3 O -0.34 -8.82 10.14 -92.43 -0.94 -9.75 16 4 C 0.12 3.47 6.69 22.51 0.15 3.62 16 5 C -0.21 -4.76 9.04 22.37 0.20 -4.56 16 6 C -0.07 -1.64 10.04 22.25 0.22 -1.42 16 7 C -0.16 -4.45 7.37 22.28 0.16 -4.28 16 8 C -0.07 -2.48 4.62 -19.88 -0.09 -2.57 16 9 C 0.16 6.89 3.02 29.85 0.09 6.98 16 10 H 0.08 3.45 8.05 -2.39 -0.02 3.43 16 11 O -0.56 -23.87 12.63 -148.98 -1.88 -25.75 16 12 C -0.01 -0.42 1.77 -11.54 -0.02 -0.44 16 13 H 0.03 1.28 6.81 -2.38 -0.02 1.27 16 14 C -0.15 -5.98 7.58 71.98 0.55 -5.44 16 15 C -0.59 -34.12 8.52 25.60 0.22 -33.90 16 16 H 0.02 1.12 7.87 -2.91 -0.02 1.09 16 17 C -0.02 -1.34 5.30 84.66 0.45 -0.89 16 18 N -0.94 -60.70 13.70 21.45 0.29 -60.41 16 19 Si 1.08 50.95 26.27 68.60 1.80 52.76 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.24 -9.94 5.72 99.48 0.57 -9.37 16 23 C -0.17 -5.73 9.62 22.37 0.22 -5.51 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 28 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 29 H 0.16 2.41 6.30 -2.91 -0.02 2.39 16 30 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.13 3.38 6.18 -2.91 -0.02 3.36 16 32 H 0.38 13.31 5.54 -74.05 -0.41 12.90 16 33 H 0.05 1.93 6.40 -2.39 -0.02 1.92 16 34 H 0.06 2.06 6.41 -2.39 -0.02 2.05 16 35 H 0.04 1.88 4.80 -2.39 -0.01 1.87 16 36 H 0.25 16.42 8.73 -92.71 -0.81 15.61 16 37 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -71.77 294.94 3.04 -68.73 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.48 Total: 22.87 kcal Atomic # 6 Polarization: -51.73 SS G_CDS: 3.28 Total: -48.45 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.29 Total: -60.41 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -2.82 Total: -35.51 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 1.80 Total: 52.76 kcal Total: -71.77 3.04 -68.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.608 kcal (2) G-P(sol) polarization free energy of solvation -71.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds