Wall clock time and date at job start Mon Mar 30 2020 06:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42905 * 109.47168 * 2 1 4 4 C 1.35895 * 117.00022 * 179.97438 * 3 2 1 5 5 C 1.38737 * 120.05312 * 179.97438 * 4 3 2 6 6 C 1.38141 * 119.94079 * 179.97438 * 5 4 3 7 7 C 1.38269 * 120.05690 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.94114 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47087 * 25.00539 * 8 7 6 10 10 O 1.42906 * 109.46580 * 145.00281 * 8 7 6 11 11 C 1.52995 * 109.47049 * 265.00176 * 8 7 6 12 12 H 1.09007 * 109.47360 * 299.99872 * 11 8 7 13 13 C 1.52996 * 109.47136 * 60.00111 * 11 8 7 14 14 C 1.50696 * 109.47088 * 180.02562 * 11 8 7 15 15 H 1.07999 * 120.00371 * 359.97438 * 14 11 8 16 16 C 1.37877 * 120.00350 * 179.97438 * 14 11 8 17 17 N 1.31514 * 120.00554 * 179.97438 * 16 14 11 18 18 Si 1.86806 * 119.99939 * 0.02562 * 16 14 11 19 19 H 1.48499 * 109.47104 * 89.99566 * 18 16 14 20 20 H 1.48489 * 109.47304 * 209.99904 * 18 16 14 21 21 H 1.48503 * 109.46857 * 329.99929 * 18 16 14 22 22 C 1.38263 * 120.11156 * 0.27879 * 7 6 5 23 23 C 1.38143 * 120.05579 * 359.44512 * 22 7 6 24 24 H 1.08999 * 109.47085 * 60.00233 * 1 2 3 25 25 H 1.08999 * 109.46623 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46910 * 299.99988 * 1 2 3 27 27 H 1.08997 * 109.47562 * 239.99784 * 2 1 3 28 28 H 1.08999 * 109.47085 * 119.99767 * 2 1 3 29 29 H 1.07994 * 120.02884 * 359.96129 * 5 4 3 30 30 H 1.07997 * 119.97174 * 180.02562 * 6 5 4 31 31 H 0.96693 * 113.99950 * 60.00188 * 10 8 7 32 32 H 1.08997 * 109.47050 * 60.00459 * 13 11 8 33 33 H 1.09008 * 109.46942 * 179.97438 * 13 11 8 34 34 H 1.08992 * 109.47179 * 299.99954 * 13 11 8 35 35 H 0.97000 * 119.99928 * 180.02562 * 17 16 14 36 36 H 1.08001 * 119.97259 * 179.69844 * 22 7 6 37 37 H 1.07992 * 120.02923 * 180.27343 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8851 2.8069 0.0000 6 6 5.2550 2.9852 0.0011 7 6 6.0962 1.8879 0.0032 8 6 7.5902 2.0854 0.0050 9 1 7.8278 3.0567 0.4388 10 8 8.2060 1.0543 0.7796 11 6 8.1141 2.0263 -1.4312 12 1 7.8766 1.0549 -1.8650 13 6 7.4548 3.1301 -2.2604 14 6 9.6082 2.2232 -1.4294 15 1 10.1317 2.3757 -0.4972 16 6 10.3070 2.2087 -2.6179 17 7 11.6108 2.3810 -2.6164 18 14 9.4016 1.9457 -4.2306 19 1 8.9800 3.2587 -4.7814 20 1 10.3012 1.2685 -5.1986 21 1 8.2036 1.1007 -3.9935 22 6 5.5690 0.6097 -0.0015 23 6 4.1998 0.4260 0.0031 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.2285 3.6643 -0.0014 30 1 5.6692 3.9826 0.0012 31 1 8.0367 0.1610 0.4506 32 1 7.6924 4.1015 -1.8267 33 1 7.8284 3.0883 -3.2836 34 1 6.3742 2.9873 -2.2617 35 1 12.1022 2.3712 -3.4526 36 1 6.2281 -0.2458 -0.0048 37 1 3.7885 -0.5725 0.0039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817131.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:17 Heat of formation + Delta-G solvation = -69.450379 kcal Electronic energy + Delta-G solvation = -18274.429141 eV Core-core repulsion = 15402.988875 eV Total energy + Delta-G solvation = -2871.440266 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.15469 -38.35720 -36.07752 -33.61098 -32.12721 -31.45091 -30.68296 -29.33302 -25.26823 -24.78744 -24.06236 -22.04054 -21.20880 -19.68394 -18.30238 -17.03052 -16.21280 -16.18926 -15.86725 -14.93670 -14.55416 -14.08337 -13.92857 -13.50891 -13.40328 -13.20910 -12.84890 -12.60690 -12.47647 -12.18782 -11.90780 -11.81022 -11.57778 -11.08212 -10.78611 -10.66916 -10.53025 -10.41099 -9.98745 -9.68883 -9.02288 -8.93489 -8.78254 -8.53848 -7.82973 -6.03863 -4.02483 1.51581 1.61780 3.15728 3.27720 3.38064 3.40219 3.94046 4.42493 4.69625 4.72682 4.94003 5.00933 5.04227 5.16020 5.23771 5.27503 5.33803 5.53245 5.56269 5.60993 5.76993 5.83378 5.96356 6.11222 6.27978 6.39020 6.43628 6.52261 6.65404 6.67425 6.90528 6.95439 7.02449 7.43837 7.47562 7.75120 8.38000 8.55873 9.05227 9.58037 11.09424 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034200 B = 0.005202 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.511968 B = 5381.124057 C = 5643.872015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.113 3.887 5 C -0.151 4.151 6 C -0.073 4.073 7 C -0.129 4.129 8 C 0.163 3.837 9 H 0.099 0.901 10 O -0.549 6.549 11 C -0.013 4.013 12 H 0.027 0.973 13 C -0.149 4.149 14 C -0.504 4.504 15 H 0.080 0.920 16 C 0.069 3.931 17 N -0.901 5.901 18 Si 0.887 3.113 19 H -0.280 1.280 20 H -0.299 1.299 21 H -0.269 1.269 22 C -0.077 4.077 23 C -0.206 4.206 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.363 0.637 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.033 0.967 35 H 0.263 0.737 36 H 0.123 0.877 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.669 -4.140 4.348 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.069 3.931 5 C -0.170 4.170 6 C -0.091 4.091 7 C -0.130 4.130 8 C 0.104 3.896 9 H 0.117 0.883 10 O -0.353 6.353 11 C -0.032 4.032 12 H 0.045 0.955 13 C -0.206 4.206 14 C -0.542 4.542 15 H 0.098 0.902 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.227 1.227 21 H -0.194 1.194 22 C -0.095 4.095 23 C -0.224 4.224 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.210 0.790 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.451 -3.477 4.589 20.285 hybrid contribution -0.534 -0.802 -1.474 1.761 sum -19.985 -4.279 3.116 20.674 Atomic orbital electron populations 1.21768 0.92981 1.02677 1.03408 1.22725 0.95612 0.82397 1.01341 1.86029 1.19446 1.28875 1.89151 1.18920 0.81845 0.94265 0.98098 1.20364 0.95142 0.94553 1.06922 1.20847 0.91810 0.99023 0.97401 1.20945 0.98431 0.93162 1.00429 1.20833 0.83814 0.91473 0.93465 0.88299 1.86569 1.76312 1.17282 1.55165 1.19786 0.97201 0.95226 0.90958 0.95487 1.22162 0.97890 1.00703 0.99881 1.20960 0.89129 1.49018 0.95124 0.90176 1.25001 0.94677 0.94744 0.98805 1.69898 1.06597 1.50471 1.26998 0.86868 0.79215 0.78163 0.83970 1.20733 1.22665 1.19411 1.20699 0.94058 0.97087 0.97663 1.21122 0.94283 0.97661 1.09380 0.91593 0.90528 0.91612 0.92174 0.92184 0.85570 0.85189 0.79004 0.92859 0.94254 0.94779 0.92741 0.85931 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.05 0.52 5.46 37.16 0.20 0.72 16 3 O -0.32 -4.18 10.14 -19.41 -0.20 -4.38 16 4 C 0.11 1.62 6.69 -39.21 -0.26 1.36 16 5 C -0.15 -2.18 9.99 -39.43 -0.39 -2.57 16 6 C -0.07 -1.12 8.27 -39.61 -0.33 -1.45 16 7 C -0.13 -2.18 4.27 -104.60 -0.45 -2.63 16 8 C 0.16 3.23 2.75 -27.88 -0.08 3.15 16 9 H 0.10 2.00 8.05 -51.93 -0.42 1.58 16 10 O -0.55 -11.03 12.72 -35.23 -0.45 -11.48 16 11 C -0.01 -0.29 1.66 -91.78 -0.15 -0.44 16 12 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 13 C -0.15 -3.19 8.18 37.16 0.30 -2.89 16 14 C -0.50 -14.06 8.81 -34.44 -0.30 -14.37 16 15 H 0.08 2.47 7.94 -52.49 -0.42 2.05 16 16 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 17 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 18 Si 0.89 22.14 24.37 -169.99 -4.14 17.99 16 19 H -0.28 -6.84 6.87 56.52 0.39 -6.46 16 20 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 21 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 22 C -0.08 -1.18 9.32 -39.61 -0.37 -1.55 16 23 C -0.21 -2.85 9.04 -39.43 -0.36 -3.21 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 28 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 29 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.36 6.09 7.39 45.56 0.34 6.43 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.04 0.89 3.27 -51.92 -0.17 0.72 16 34 H 0.03 0.64 6.41 -51.93 -0.33 0.31 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.12 1.68 6.62 -52.49 -0.35 1.33 16 37 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 LS Contribution 297.36 15.07 4.48 4.48 Total: -1.00 -32.11 297.36 -6.00 -38.11 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.57 Total: 4.93 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -1.90 Total: -22.69 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.77 Total: -26.97 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.65 Total: -15.85 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.11 -6.00 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817131.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.341 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds