Wall clock time and date at job start Mon Mar 30 2020 06:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42905 * 109.47168 * 2 1 4 4 C 1.35895 * 117.00022 * 179.97438 * 3 2 1 5 5 C 1.38737 * 120.05312 * 179.97438 * 4 3 2 6 6 C 1.38141 * 119.94079 * 179.97438 * 5 4 3 7 7 C 1.38269 * 120.05690 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.94114 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47087 * 25.00539 * 8 7 6 10 10 O 1.42906 * 109.46580 * 145.00281 * 8 7 6 11 11 C 1.52995 * 109.47049 * 265.00176 * 8 7 6 12 12 H 1.09007 * 109.47360 * 299.99872 * 11 8 7 13 13 C 1.52996 * 109.47136 * 60.00111 * 11 8 7 14 14 C 1.50696 * 109.47088 * 180.02562 * 11 8 7 15 15 H 1.07999 * 120.00371 * 359.97438 * 14 11 8 16 16 C 1.37877 * 120.00350 * 179.97438 * 14 11 8 17 17 N 1.31514 * 120.00554 * 179.97438 * 16 14 11 18 18 Si 1.86806 * 119.99939 * 0.02562 * 16 14 11 19 19 H 1.48499 * 109.47104 * 89.99566 * 18 16 14 20 20 H 1.48489 * 109.47304 * 209.99904 * 18 16 14 21 21 H 1.48503 * 109.46857 * 329.99929 * 18 16 14 22 22 C 1.38263 * 120.11156 * 0.27879 * 7 6 5 23 23 C 1.38143 * 120.05579 * 359.44512 * 22 7 6 24 24 H 1.08999 * 109.47085 * 60.00233 * 1 2 3 25 25 H 1.08999 * 109.46623 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46910 * 299.99988 * 1 2 3 27 27 H 1.08997 * 109.47562 * 239.99784 * 2 1 3 28 28 H 1.08999 * 109.47085 * 119.99767 * 2 1 3 29 29 H 1.07994 * 120.02884 * 359.96129 * 5 4 3 30 30 H 1.07997 * 119.97174 * 180.02562 * 6 5 4 31 31 H 0.96693 * 113.99950 * 60.00188 * 10 8 7 32 32 H 1.08997 * 109.47050 * 60.00459 * 13 11 8 33 33 H 1.09008 * 109.46942 * 179.97438 * 13 11 8 34 34 H 1.08992 * 109.47179 * 299.99954 * 13 11 8 35 35 H 0.97000 * 119.99928 * 180.02562 * 17 16 14 36 36 H 1.08001 * 119.97259 * 179.69844 * 22 7 6 37 37 H 1.07992 * 120.02923 * 180.27343 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8851 2.8069 0.0000 6 6 5.2550 2.9852 0.0011 7 6 6.0962 1.8879 0.0032 8 6 7.5902 2.0854 0.0050 9 1 7.8278 3.0567 0.4388 10 8 8.2060 1.0543 0.7796 11 6 8.1141 2.0263 -1.4312 12 1 7.8766 1.0549 -1.8650 13 6 7.4548 3.1301 -2.2604 14 6 9.6082 2.2232 -1.4294 15 1 10.1317 2.3757 -0.4972 16 6 10.3070 2.2087 -2.6179 17 7 11.6108 2.3810 -2.6164 18 14 9.4016 1.9457 -4.2306 19 1 8.9800 3.2587 -4.7814 20 1 10.3012 1.2685 -5.1986 21 1 8.2036 1.1007 -3.9935 22 6 5.5690 0.6097 -0.0015 23 6 4.1998 0.4260 0.0031 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.2285 3.6643 -0.0014 30 1 5.6692 3.9826 0.0012 31 1 8.0367 0.1610 0.4506 32 1 7.6924 4.1015 -1.8267 33 1 7.8284 3.0883 -3.2836 34 1 6.3742 2.9873 -2.2617 35 1 12.1022 2.3712 -3.4526 36 1 6.2281 -0.2458 -0.0048 37 1 3.7885 -0.5725 0.0039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817131.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:16 Heat of formation + Delta-G solvation = -91.773617 kcal Electronic energy + Delta-G solvation = -18275.397149 eV Core-core repulsion = 15402.988875 eV Total energy + Delta-G solvation = -2872.408274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.24176 -39.61256 -37.41660 -35.50558 -33.52656 -32.76103 -31.81736 -30.57702 -27.07593 -26.45705 -24.92612 -23.26058 -22.34835 -21.32154 -19.33342 -18.89316 -17.86150 -17.04094 -17.00810 -16.61460 -16.04656 -15.49726 -15.35685 -14.79506 -14.49566 -14.38967 -14.19444 -14.00369 -13.87860 -13.38591 -13.19615 -13.04398 -12.68824 -12.57059 -12.45543 -12.18504 -11.85546 -11.65930 -11.56170 -11.51844 -10.99561 -10.75264 -10.54889 -9.91743 -8.99672 -8.26490 -6.29453 0.41009 0.45745 1.30845 1.35414 1.46108 2.28490 2.33305 2.79083 3.08159 3.76270 3.83499 3.88017 3.97248 4.07447 4.16797 4.27994 4.38214 4.42524 4.49297 4.53943 4.66805 4.76959 4.90068 4.94230 4.95742 5.00133 5.11115 5.20517 5.22492 5.32207 5.41311 5.56450 5.68357 5.79795 5.83559 6.34747 6.48916 6.78241 6.96011 7.34792 8.90803 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.034200 B = 0.005202 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.511968 B = 5381.124057 C = 5643.872015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.331 6.331 4 C 0.114 3.886 5 C -0.157 4.157 6 C -0.077 4.077 7 C -0.149 4.149 8 C 0.172 3.828 9 H 0.085 0.915 10 O -0.567 6.567 11 C -0.011 4.011 12 H 0.028 0.972 13 C -0.144 4.144 14 C -0.505 4.505 15 H 0.033 0.967 16 C 0.010 3.990 17 N -0.953 5.953 18 Si 0.952 3.048 19 H -0.269 1.269 20 H -0.302 1.302 21 H -0.249 1.249 22 C -0.083 4.083 23 C -0.204 4.204 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.377 0.623 32 H 0.055 0.945 33 H 0.028 0.972 34 H 0.062 0.938 35 H 0.264 0.736 36 H 0.134 0.866 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.914 -5.023 3.657 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.245 6.245 4 C 0.069 3.931 5 C -0.175 4.175 6 C -0.095 4.095 7 C -0.150 4.150 8 C 0.113 3.887 9 H 0.103 0.897 10 O -0.373 6.373 11 C -0.030 4.030 12 H 0.046 0.954 13 C -0.201 4.201 14 C -0.543 4.543 15 H 0.051 0.949 16 C -0.187 4.187 17 N -0.594 5.594 18 Si 0.779 3.221 19 H -0.195 1.195 20 H -0.230 1.230 21 H -0.173 1.173 22 C -0.101 4.101 23 C -0.223 4.223 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.161 0.839 30 H 0.156 0.844 31 H 0.225 0.775 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.152 0.848 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.731 -4.370 3.913 23.476 hybrid contribution 0.421 -0.568 -1.130 1.333 sum -22.310 -4.939 2.783 23.019 Atomic orbital electron populations 1.21800 0.91347 1.04154 1.03201 1.23064 0.96980 0.80914 1.02183 1.86040 1.18567 1.31185 1.88753 1.19112 0.82662 0.94393 0.96968 1.20568 0.94893 0.95517 1.06566 1.20961 0.92253 0.99051 0.97224 1.20626 0.96289 0.94580 1.03457 1.20552 0.86068 0.90928 0.91161 0.89691 1.86526 1.76921 1.18322 1.55558 1.19729 0.93898 0.95737 0.93678 0.95400 1.22064 0.99465 1.00057 0.98560 1.21219 0.92018 1.47824 0.93230 0.94853 1.25862 0.95305 0.94693 1.02795 1.70060 1.08596 1.52638 1.28060 0.85808 0.78390 0.78808 0.79059 1.19517 1.22960 1.17275 1.20891 0.95070 0.96806 0.97354 1.21359 0.93533 0.98949 1.08445 0.91883 0.88215 0.91749 0.91404 0.91183 0.83885 0.84387 0.77494 0.92639 0.95357 0.91921 0.92702 0.84837 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.04 0.67 5.46 71.98 0.39 1.07 16 3 O -0.33 -7.64 10.14 -92.37 -0.94 -8.57 16 4 C 0.11 2.93 6.69 22.51 0.15 3.08 16 5 C -0.16 -4.11 9.99 22.37 0.22 -3.89 16 6 C -0.08 -2.21 8.27 22.25 0.18 -2.03 16 7 C -0.15 -4.80 4.27 -19.85 -0.08 -4.89 16 8 C 0.17 6.77 2.75 29.85 0.08 6.85 16 9 H 0.09 3.50 8.05 -2.39 -0.02 3.49 16 10 O -0.57 -22.95 12.72 -148.98 -1.90 -24.85 16 11 C -0.01 -0.51 1.66 -11.54 -0.02 -0.53 16 12 H 0.03 1.26 7.20 -2.38 -0.02 1.24 16 13 C -0.14 -5.90 8.18 71.98 0.59 -5.31 16 14 C -0.50 -28.84 8.81 25.60 0.23 -28.62 16 15 H 0.03 2.16 7.94 -2.91 -0.02 2.14 16 16 C 0.01 0.57 5.45 84.65 0.46 1.03 16 17 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 18 Si 0.95 45.40 24.37 68.60 1.67 47.07 16 19 H -0.27 -12.27 6.87 99.48 0.68 -11.58 16 20 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 21 H -0.25 -10.96 6.53 99.48 0.65 -10.31 16 22 C -0.08 -2.36 9.32 22.25 0.21 -2.15 16 23 C -0.20 -5.03 9.04 22.37 0.20 -4.82 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 28 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 30 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.38 12.52 7.39 -74.06 -0.55 11.98 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.03 1.21 3.27 -2.38 -0.01 1.20 16 34 H 0.06 2.20 6.41 -2.39 -0.02 2.18 16 35 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.13 3.36 6.62 -2.91 -0.02 3.34 16 37 H 0.15 2.78 6.30 -2.91 -0.02 2.77 16 Total: -1.00 -69.95 297.36 2.93 -67.02 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.44 Total: 20.63 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 3.35 Total: -41.14 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.30 Total: -60.16 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -2.83 Total: -33.42 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.67 Total: 47.07 kcal Total: -69.95 2.93 -67.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817131.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.758 kcal (2) G-P(sol) polarization free energy of solvation -69.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds