Wall clock time and date at job start Mon Mar 30 2020 06:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46990 * 2 1 4 4 C 1.35900 * 116.99716 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05518 * 179.97438 * 4 3 2 6 6 C 1.38142 * 119.94455 * 180.02562 * 5 4 3 7 7 C 1.38262 * 120.05686 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.94735 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47122 * 339.99813 * 8 7 6 10 10 O 1.42905 * 109.47321 * 219.99714 * 8 7 6 11 11 C 1.52997 * 109.47342 * 99.99703 * 8 7 6 12 12 H 1.09001 * 109.47375 * 60.00270 * 11 8 7 13 13 C 1.52996 * 109.46975 * 299.99900 * 11 8 7 14 14 C 1.50703 * 109.47084 * 180.02562 * 11 8 7 15 15 H 1.07995 * 120.00280 * 359.97438 * 14 11 8 16 16 C 1.37880 * 119.99788 * 179.97438 * 14 11 8 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99600 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46918 * 90.00136 * 18 16 14 20 20 H 1.48500 * 109.47037 * 209.99668 * 18 16 14 21 21 H 1.48498 * 109.47434 * 330.00164 * 18 16 14 22 22 C 1.38268 * 120.11136 * 0.28920 * 7 6 5 23 23 C 1.38146 * 120.05289 * 359.45351 * 22 7 6 24 24 H 1.09004 * 109.47541 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47375 * 300.00594 * 1 2 3 26 26 H 1.09005 * 109.47029 * 60.00391 * 1 2 3 27 27 H 1.08993 * 109.47320 * 239.99568 * 2 1 3 28 28 H 1.08998 * 109.46702 * 119.99771 * 2 1 3 29 29 H 1.07994 * 120.02794 * 0.02562 * 5 4 3 30 30 H 1.07999 * 119.97641 * 179.97438 * 6 5 4 31 31 H 0.96696 * 114.00036 * 299.99741 * 10 8 7 32 32 H 1.09004 * 109.47368 * 60.00217 * 13 11 8 33 33 H 1.09004 * 109.47108 * 180.02562 * 13 11 8 34 34 H 1.09001 * 109.47367 * 299.99815 * 13 11 8 35 35 H 0.96996 * 119.99914 * 179.97438 * 17 16 14 36 36 H 1.08001 * 119.97397 * 179.71252 * 22 7 6 37 37 H 1.08004 * 120.02930 * 180.29489 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8851 2.8068 0.0000 6 6 5.2550 2.9851 0.0001 7 6 6.0962 1.8878 0.0011 8 6 7.5902 2.0852 0.0017 9 1 7.8240 3.0900 -0.3503 10 8 8.1981 1.1238 -0.8634 11 6 8.1279 1.9046 1.4226 12 1 7.8941 0.8999 1.7747 13 6 7.4772 2.9339 2.3488 14 6 9.6219 2.1026 1.4233 15 1 10.1364 2.3337 0.5023 16 6 10.3319 1.9888 2.5997 17 7 9.7053 1.7078 3.7214 18 14 12.1838 2.2335 2.6003 19 1 12.4937 3.6656 2.8420 20 1 12.7919 1.4075 3.6742 21 1 12.7380 1.8222 1.2855 22 6 5.5689 0.6096 -0.0039 23 6 4.1997 0.4260 0.0015 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.2285 3.6642 -0.0004 30 1 5.6693 3.9825 -0.0008 31 1 8.0315 0.2057 -0.6098 32 1 6.3965 2.7912 2.3485 33 1 7.8606 2.8056 3.3611 34 1 7.7111 3.9387 1.9968 35 1 10.2049 1.6274 4.5489 36 1 6.2281 -0.2459 -0.0077 37 1 3.7884 -0.5726 0.0024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:19 Heat of formation + Delta-G solvation = -78.159987 kcal Electronic energy + Delta-G solvation = -18185.636150 eV Core-core repulsion = 15313.818207 eV Total energy + Delta-G solvation = -2871.817943 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.02696 -38.19259 -35.93305 -33.52608 -32.03770 -31.06721 -30.49371 -28.91673 -25.08861 -24.64923 -23.93875 -21.97301 -21.08990 -19.58388 -18.18861 -16.87794 -16.11117 -15.79183 -15.63917 -14.91244 -14.46268 -13.94470 -13.73963 -13.41385 -13.28066 -12.98882 -12.74190 -12.60900 -12.18439 -11.83007 -11.72480 -11.42597 -11.00031 -10.95912 -10.65364 -10.58739 -10.52075 -10.16756 -10.05869 -9.99906 -8.86675 -8.79187 -8.65550 -8.31300 -7.69152 -5.95697 -4.01301 1.64374 1.75234 3.25592 3.33240 3.39823 3.44784 4.07190 4.47255 4.77360 4.81416 5.04159 5.12001 5.13685 5.29217 5.34789 5.38146 5.44990 5.60536 5.69514 5.70546 5.85220 5.95529 6.15087 6.40540 6.52879 6.56778 6.65951 6.89317 7.01054 7.06914 7.15176 7.28321 7.58993 7.74268 7.91875 8.12951 8.42479 8.52160 9.03519 9.63060 11.10151 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.043685 B = 0.004568 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.796113 B = 6128.410857 C = 6221.408418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.111 3.889 5 C -0.151 4.151 6 C -0.073 4.073 7 C -0.121 4.121 8 C 0.150 3.850 9 H 0.092 0.908 10 O -0.556 6.556 11 C 0.024 3.976 12 H 0.027 0.973 13 C -0.137 4.137 14 C -0.504 4.504 15 H 0.061 0.939 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.076 4.076 23 C -0.205 4.205 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.363 0.637 32 H 0.012 0.988 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.259 0.741 36 H 0.122 0.878 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.747 -2.868 -6.368 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.236 6.236 4 C 0.067 3.933 5 C -0.170 4.170 6 C -0.091 4.091 7 C -0.122 4.122 8 C 0.091 3.909 9 H 0.110 0.890 10 O -0.360 6.360 11 C 0.005 3.995 12 H 0.045 0.955 13 C -0.194 4.194 14 C -0.542 4.542 15 H 0.079 0.921 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.198 1.198 22 C -0.094 4.094 23 C -0.224 4.224 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.209 0.791 32 H 0.031 0.969 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.139 0.861 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.658 -2.219 -6.484 16.181 hybrid contribution 0.840 -0.613 0.555 1.179 sum -13.817 -2.832 -5.929 15.300 Atomic orbital electron populations 1.21766 0.93058 1.02619 1.03366 1.22709 0.95537 0.82490 1.01330 1.86021 1.19521 1.28781 1.89250 1.18893 0.81766 0.94263 0.98406 1.20340 0.95133 0.94490 1.07034 1.20825 0.91806 0.98950 0.97540 1.20906 0.98460 0.93038 0.99753 1.21135 0.84076 0.92243 0.93408 0.88973 1.86516 1.77009 1.18057 1.54416 1.19292 0.95514 0.96237 0.88415 0.95504 1.21769 0.95792 0.97835 1.04054 1.21136 0.91515 1.47408 0.94118 0.92126 1.24964 0.98271 0.95309 0.95635 1.69895 1.35272 1.49311 0.98803 0.86597 0.85784 0.77987 0.77657 1.20797 1.21395 1.19850 1.20682 0.93993 0.97082 0.97673 1.21106 0.94312 0.97574 1.09409 0.90576 0.91593 0.91675 0.92263 0.92149 0.85711 0.85436 0.79057 0.96900 0.89857 0.95586 0.93148 0.86059 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.56 5.46 37.16 0.20 0.76 16 3 O -0.32 -4.47 10.14 -19.43 -0.20 -4.67 16 4 C 0.11 1.71 6.69 -39.22 -0.26 1.45 16 5 C -0.15 -2.35 9.99 -39.43 -0.39 -2.74 16 6 C -0.07 -1.22 8.70 -39.61 -0.34 -1.56 16 7 C -0.12 -2.20 4.07 -104.60 -0.43 -2.63 16 8 C 0.15 3.13 2.74 -27.89 -0.08 3.05 16 9 H 0.09 1.95 8.00 -51.93 -0.42 1.53 16 10 O -0.56 -11.46 12.77 -35.23 -0.45 -11.91 16 11 C 0.02 0.59 2.07 -91.77 -0.19 0.40 16 12 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 13 C -0.14 -3.28 8.56 37.16 0.32 -2.96 16 14 C -0.50 -13.80 8.23 -34.44 -0.28 -14.09 16 15 H 0.06 1.69 7.70 -52.49 -0.40 1.29 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 18 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.08 -1.27 9.32 -39.60 -0.37 -1.63 16 23 C -0.21 -3.08 9.04 -39.43 -0.36 -3.44 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.55 7.66 -51.93 -0.40 0.16 16 28 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 29 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.13 1.95 8.03 -52.49 -0.42 1.53 16 31 H 0.36 6.39 7.49 45.56 0.34 6.73 16 32 H 0.01 0.27 6.64 -51.93 -0.34 -0.08 16 33 H 0.08 2.23 6.07 -51.93 -0.31 1.92 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.12 1.84 6.77 -52.49 -0.36 1.48 16 37 H 0.12 1.50 6.30 -52.48 -0.33 1.17 16 LS Contribution 304.91 15.07 4.59 4.59 Total: -1.00 -30.49 304.91 -7.05 -37.54 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.71 Total: 5.57 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -1.89 Total: -22.65 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.63 Total: -24.98 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.65 Total: -16.58 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.49 -7.05 -37.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.623 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds