Wall clock time and date at job start Mon Mar 30 2020 06:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46990 * 2 1 4 4 C 1.35900 * 116.99716 * 179.97438 * 3 2 1 5 5 C 1.38736 * 120.05518 * 179.97438 * 4 3 2 6 6 C 1.38142 * 119.94455 * 180.02562 * 5 4 3 7 7 C 1.38262 * 120.05686 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.94735 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47122 * 339.99813 * 8 7 6 10 10 O 1.42905 * 109.47321 * 219.99714 * 8 7 6 11 11 C 1.52997 * 109.47342 * 99.99703 * 8 7 6 12 12 H 1.09001 * 109.47375 * 60.00270 * 11 8 7 13 13 C 1.52996 * 109.46975 * 299.99900 * 11 8 7 14 14 C 1.50703 * 109.47084 * 180.02562 * 11 8 7 15 15 H 1.07995 * 120.00280 * 359.97438 * 14 11 8 16 16 C 1.37880 * 119.99788 * 179.97438 * 14 11 8 17 17 N 1.31511 * 120.00327 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99600 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46918 * 90.00136 * 18 16 14 20 20 H 1.48500 * 109.47037 * 209.99668 * 18 16 14 21 21 H 1.48498 * 109.47434 * 330.00164 * 18 16 14 22 22 C 1.38268 * 120.11136 * 0.28920 * 7 6 5 23 23 C 1.38146 * 120.05289 * 359.45351 * 22 7 6 24 24 H 1.09004 * 109.47541 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47375 * 300.00594 * 1 2 3 26 26 H 1.09005 * 109.47029 * 60.00391 * 1 2 3 27 27 H 1.08993 * 109.47320 * 239.99568 * 2 1 3 28 28 H 1.08998 * 109.46702 * 119.99771 * 2 1 3 29 29 H 1.07994 * 120.02794 * 0.02562 * 5 4 3 30 30 H 1.07999 * 119.97641 * 179.97438 * 6 5 4 31 31 H 0.96696 * 114.00036 * 299.99741 * 10 8 7 32 32 H 1.09004 * 109.47368 * 60.00217 * 13 11 8 33 33 H 1.09004 * 109.47108 * 180.02562 * 13 11 8 34 34 H 1.09001 * 109.47367 * 299.99815 * 13 11 8 35 35 H 0.96996 * 119.99914 * 179.97438 * 17 16 14 36 36 H 1.08001 * 119.97397 * 179.71252 * 22 7 6 37 37 H 1.08004 * 120.02930 * 180.29489 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8851 2.8068 0.0000 6 6 5.2550 2.9851 0.0001 7 6 6.0962 1.8878 0.0011 8 6 7.5902 2.0852 0.0017 9 1 7.8240 3.0900 -0.3503 10 8 8.1981 1.1238 -0.8634 11 6 8.1279 1.9046 1.4226 12 1 7.8941 0.8999 1.7747 13 6 7.4772 2.9339 2.3488 14 6 9.6219 2.1026 1.4233 15 1 10.1364 2.3337 0.5023 16 6 10.3319 1.9888 2.5997 17 7 9.7053 1.7078 3.7214 18 14 12.1838 2.2335 2.6003 19 1 12.4937 3.6656 2.8420 20 1 12.7919 1.4075 3.6742 21 1 12.7380 1.8222 1.2855 22 6 5.5689 0.6096 -0.0039 23 6 4.1997 0.4260 0.0015 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.2285 3.6642 -0.0004 30 1 5.6693 3.9825 -0.0008 31 1 8.0315 0.2057 -0.6098 32 1 6.3965 2.7912 2.3485 33 1 7.8606 2.8056 3.3611 34 1 7.7111 3.9387 1.9968 35 1 10.2049 1.6274 4.5489 36 1 6.2281 -0.2459 -0.0077 37 1 3.7884 -0.5726 0.0024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:19 Heat of formation + Delta-G solvation = -97.120069 kcal Electronic energy + Delta-G solvation = -18186.458321 eV Core-core repulsion = 15313.818207 eV Total energy + Delta-G solvation = -2872.640113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.20652 -39.52905 -37.36393 -35.47964 -33.14794 -32.58257 -31.75884 -30.32956 -27.14882 -26.21465 -24.91289 -23.29479 -22.32569 -21.29223 -19.31291 -18.63716 -17.49354 -17.01866 -16.99528 -16.67768 -15.94200 -15.37410 -15.23991 -14.73678 -14.41489 -14.23990 -14.18240 -13.76443 -13.45255 -13.21801 -12.98523 -12.89063 -12.61767 -12.56999 -12.53583 -12.09831 -12.00572 -11.90218 -11.64986 -11.49153 -10.81834 -10.58050 -10.37022 -9.90895 -8.97314 -8.06792 -6.19565 0.42250 0.48353 1.41715 1.42952 1.53582 2.29088 2.45028 2.81677 3.20096 3.81574 3.84890 3.95304 4.00322 4.07677 4.18185 4.38300 4.41636 4.46588 4.55445 4.72266 4.77030 4.91982 4.96159 5.00602 5.12011 5.18396 5.21560 5.29905 5.33020 5.42162 5.62622 5.72628 5.83000 5.94833 6.09995 6.38704 6.49754 6.87896 6.99247 7.47988 8.97305 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.043685 B = 0.004568 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.796113 B = 6128.410857 C = 6221.408418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.330 6.330 4 C 0.112 3.888 5 C -0.157 4.157 6 C -0.079 4.079 7 C -0.144 4.144 8 C 0.163 3.837 9 H 0.085 0.915 10 O -0.566 6.566 11 C 0.025 3.975 12 H 0.002 0.998 13 C -0.123 4.123 14 C -0.520 4.520 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.951 3.049 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.085 4.085 23 C -0.205 4.205 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.144 0.856 30 H 0.136 0.864 31 H 0.375 0.625 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.028 0.972 35 H 0.259 0.741 36 H 0.130 0.870 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.895 -3.287 -6.936 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.067 3.933 5 C -0.176 4.176 6 C -0.097 4.097 7 C -0.145 4.145 8 C 0.104 3.896 9 H 0.102 0.898 10 O -0.373 6.373 11 C 0.006 3.994 12 H 0.021 0.979 13 C -0.181 4.181 14 C -0.558 4.558 15 H 0.069 0.931 16 C -0.186 4.186 17 N -0.559 5.559 18 Si 0.778 3.222 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.103 4.103 23 C -0.223 4.223 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.223 0.777 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.147 0.853 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.819 -2.647 -7.060 17.524 hybrid contribution 1.082 -0.541 0.712 1.403 sum -14.737 -3.188 -6.348 16.360 Atomic orbital electron populations 1.21797 0.91203 1.04185 1.03224 1.23065 0.97070 0.80938 1.02121 1.86032 1.18475 1.31173 1.88824 1.19070 0.82665 0.94323 0.97218 1.20562 0.94878 0.95531 1.06622 1.20950 0.92344 0.98965 0.97450 1.20674 0.96764 0.94414 1.02637 1.20779 0.86013 0.91949 0.90847 0.89755 1.86465 1.77416 1.18980 1.54400 1.19221 0.94332 0.94851 0.90967 0.97943 1.21575 0.96648 0.97841 1.02048 1.21421 0.93303 1.47331 0.93757 0.93133 1.25684 1.02372 0.95153 0.95368 1.70020 1.36690 1.49971 0.99193 0.85656 0.80901 0.78051 0.77636 1.20216 1.20952 1.19593 1.20862 0.95059 0.96785 0.97570 1.21350 0.93534 0.98939 1.08487 0.88157 0.91912 0.91647 0.91146 0.91612 0.83869 0.84641 0.77716 0.95184 0.92835 0.95265 0.93152 0.85263 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.04 0.76 5.46 71.98 0.39 1.15 16 3 O -0.33 -8.43 10.14 -92.42 -0.94 -9.37 16 4 C 0.11 3.23 6.69 22.51 0.15 3.38 16 5 C -0.16 -4.62 9.99 22.37 0.22 -4.40 16 6 C -0.08 -2.56 8.70 22.25 0.19 -2.36 16 7 C -0.14 -5.18 4.07 -19.85 -0.08 -5.26 16 8 C 0.16 6.82 2.74 29.85 0.08 6.90 16 9 H 0.08 3.60 8.00 -2.39 -0.02 3.58 16 10 O -0.57 -23.40 12.77 -148.98 -1.90 -25.30 16 11 C 0.02 1.24 2.07 -11.54 -0.02 1.21 16 12 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 13 C -0.12 -5.96 8.56 71.98 0.62 -5.35 16 14 C -0.52 -28.86 8.23 25.60 0.21 -28.65 16 15 H 0.05 2.85 7.70 -2.91 -0.02 2.83 16 16 C 0.01 0.69 5.30 84.66 0.45 1.13 16 17 N -0.92 -53.31 11.32 21.45 0.24 -53.06 16 18 Si 0.95 44.32 29.54 68.60 2.03 46.34 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 22 C -0.08 -2.72 9.32 22.25 0.21 -2.52 16 23 C -0.20 -5.72 9.04 22.37 0.20 -5.52 16 24 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 28 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 29 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 30 H 0.14 4.03 8.03 -2.91 -0.02 4.01 16 31 H 0.37 13.21 7.49 -74.06 -0.55 12.65 16 32 H 0.03 1.30 6.64 -2.39 -0.02 1.29 16 33 H 0.05 2.91 6.07 -2.38 -0.01 2.89 16 34 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.59 16 36 H 0.13 3.81 6.77 -2.91 -0.02 3.79 16 37 H 0.15 3.24 6.30 -2.91 -0.02 3.22 16 Total: -1.00 -64.46 304.91 3.30 -61.17 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.51 Total: 21.65 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 3.36 Total: -41.43 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.24 Total: -53.06 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -2.84 Total: -34.67 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -64.46 3.30 -61.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.954 kcal (2) G-P(sol) polarization free energy of solvation -64.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds