Wall clock time and date at job start Mon Mar 30 2020 06:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47285 * 2 1 4 4 C 1.35902 * 116.99503 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05216 * 179.97438 * 4 3 2 6 6 C 1.38138 * 119.94724 * 179.97438 * 5 4 3 7 7 C 1.38270 * 120.05052 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.93895 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47345 * 25.00291 * 8 7 6 10 10 O 1.42903 * 109.46442 * 145.00221 * 8 7 6 11 11 C 1.53001 * 109.47316 * 264.99984 * 8 7 6 12 12 H 1.08997 * 109.47124 * 60.00119 * 11 8 7 13 13 C 1.52998 * 109.46816 * 300.00224 * 11 8 7 14 14 C 1.50701 * 109.46986 * 180.02562 * 11 8 7 15 15 H 1.07994 * 120.00170 * 359.97438 * 14 11 8 16 16 C 1.37872 * 119.99601 * 180.02562 * 14 11 8 17 17 N 1.31511 * 120.00621 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99871 * 179.97438 * 16 14 11 19 19 H 1.48489 * 109.47236 * 89.99811 * 18 16 14 20 20 H 1.48498 * 109.47111 * 210.00181 * 18 16 14 21 21 H 1.48505 * 109.46789 * 329.99666 * 18 16 14 22 22 C 1.38265 * 120.11421 * 0.27647 * 7 6 5 23 23 C 1.38143 * 120.05439 * 359.44953 * 22 7 6 24 24 H 1.09004 * 109.46837 * 300.00223 * 1 2 3 25 25 H 1.08998 * 109.46933 * 59.99945 * 1 2 3 26 26 H 1.08998 * 109.47340 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47189 * 239.99389 * 2 1 3 28 28 H 1.09007 * 109.47056 * 120.00022 * 2 1 3 29 29 H 1.08002 * 120.02449 * 359.95907 * 5 4 3 30 30 H 1.07993 * 119.97736 * 180.02562 * 6 5 4 31 31 H 0.96700 * 114.00311 * 60.00230 * 10 8 7 32 32 H 1.09001 * 109.47666 * 299.99853 * 13 11 8 33 33 H 1.08999 * 109.47493 * 60.00111 * 13 11 8 34 34 H 1.09005 * 109.46619 * 180.02562 * 13 11 8 35 35 H 0.97002 * 120.00666 * 179.97438 * 17 16 14 36 36 H 1.08003 * 119.96829 * 179.70554 * 22 7 6 37 37 H 1.08002 * 120.02755 * 180.27532 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5251 0.0005 5 6 3.8853 2.8066 0.0000 6 6 5.2551 2.9850 0.0011 7 6 6.0963 1.8875 0.0032 8 6 7.5903 2.0850 0.0038 9 1 7.8283 3.0565 0.4369 10 8 8.2066 1.0543 0.7785 11 6 8.1133 2.0250 -1.4328 12 1 7.6432 2.8111 -2.0236 13 6 7.7793 0.6613 -2.0405 14 6 9.6074 2.2219 -1.4320 15 1 10.1315 2.3749 -0.5002 16 6 10.3051 2.2077 -2.6211 17 7 9.6670 2.0219 -3.7559 18 14 12.1571 2.4524 -2.6203 19 1 12.8304 1.1348 -2.4964 20 1 12.5710 3.1024 -3.8897 21 1 12.5419 3.3147 -1.4742 22 6 5.5690 0.6094 -0.0015 23 6 4.1998 0.4258 0.0031 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.2287 3.6641 -0.0015 30 1 5.6695 3.9823 0.0012 31 1 8.0370 0.1607 0.4502 32 1 8.2494 -0.1249 -1.4497 33 1 6.6987 0.5184 -2.0410 34 1 8.1523 0.6184 -3.0639 35 1 10.1578 2.0123 -4.5925 36 1 6.2282 -0.2462 -0.0046 37 1 3.7884 -0.5729 0.0039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:21 Heat of formation + Delta-G solvation = -76.172878 kcal Electronic energy + Delta-G solvation = -18245.372105 eV Core-core repulsion = 15373.640330 eV Total energy + Delta-G solvation = -2871.731775 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.04360 -38.27708 -36.02974 -33.31327 -32.02897 -30.84502 -30.58111 -28.93048 -25.55565 -24.67943 -23.95410 -21.71797 -21.22094 -19.36292 -18.18201 -16.80869 -16.10871 -15.86206 -15.57851 -14.97288 -14.48239 -14.17571 -13.54750 -13.40436 -13.27872 -13.15205 -12.82207 -12.59294 -12.20386 -11.84180 -11.67076 -11.34235 -11.00273 -10.92663 -10.66409 -10.58662 -10.53915 -10.23480 -10.07436 -9.86650 -8.88284 -8.84906 -8.61481 -8.31069 -7.67561 -5.96121 -4.01583 1.64916 1.75754 3.25944 3.33346 3.39781 3.44232 4.07526 4.47116 4.77482 4.81658 5.04442 5.12517 5.14083 5.30084 5.34953 5.37905 5.44981 5.60652 5.70002 5.71358 5.85706 5.95937 6.17303 6.43814 6.50862 6.54131 6.65694 6.79899 7.00715 7.02851 7.07045 7.33665 7.59423 7.69010 7.90430 8.12706 8.41703 8.53637 9.03205 9.62817 11.09907 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.045481 B = 0.004575 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.498220 B = 6119.349703 C = 6218.028014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.112 3.888 5 C -0.152 4.152 6 C -0.077 4.077 7 C -0.124 4.124 8 C 0.151 3.849 9 H 0.093 0.907 10 O -0.555 6.555 11 C 0.022 3.978 12 H 0.034 0.966 13 C -0.144 4.144 14 C -0.503 4.503 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.070 4.070 23 C -0.208 4.208 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.363 0.637 32 H 0.024 0.976 33 H 0.015 0.985 34 H 0.085 0.915 35 H 0.259 0.741 36 H 0.122 0.878 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.593 -3.862 6.423 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.236 6.236 4 C 0.067 3.933 5 C -0.170 4.170 6 C -0.095 4.095 7 C -0.125 4.125 8 C 0.092 3.908 9 H 0.110 0.890 10 O -0.361 6.361 11 C 0.003 3.997 12 H 0.052 0.948 13 C -0.202 4.202 14 C -0.541 4.541 15 H 0.079 0.921 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.088 4.088 23 C -0.226 4.226 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.210 0.790 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.140 0.860 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.505 -3.217 6.574 16.247 hybrid contribution 0.851 -0.646 -0.586 1.218 sum -13.653 -3.862 5.989 15.401 Atomic orbital electron populations 1.21766 0.93060 1.02614 1.03366 1.22711 0.95530 0.82499 1.01323 1.86020 1.19531 1.28772 1.89249 1.18895 0.81754 0.94266 0.98372 1.20329 0.95114 0.94484 1.07103 1.20819 0.91860 0.98978 0.97856 1.20927 0.98466 0.93083 0.99990 1.21080 0.83997 0.90752 0.94996 0.88962 1.86497 1.76420 1.17501 1.55654 1.19262 0.96267 0.95086 0.89064 0.94832 1.21906 0.96089 0.97897 1.04299 1.21124 0.91709 1.48332 0.92928 0.92106 1.24962 0.98254 0.95363 0.95624 1.69890 1.35335 1.50481 0.97590 0.86584 0.85833 0.78249 0.77258 1.20806 1.21416 1.19901 1.20699 0.93883 0.97114 0.97064 1.21114 0.94335 0.97572 1.09628 0.91673 0.91594 0.90581 0.92159 0.92270 0.85702 0.85344 0.78980 0.95704 0.96628 0.89674 0.93140 0.86043 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.56 5.46 37.16 0.20 0.76 16 3 O -0.32 -4.48 10.14 -19.43 -0.20 -4.67 16 4 C 0.11 1.72 6.69 -39.22 -0.26 1.46 16 5 C -0.15 -2.36 9.99 -39.43 -0.39 -2.75 16 6 C -0.08 -1.29 9.67 -39.61 -0.38 -1.67 16 7 C -0.12 -2.27 4.62 -104.60 -0.48 -2.75 16 8 C 0.15 3.14 3.01 -27.88 -0.08 3.05 16 9 H 0.09 1.93 8.05 -51.93 -0.42 1.51 16 10 O -0.56 -11.53 12.68 -35.23 -0.45 -11.98 16 11 C 0.02 0.53 2.19 -91.77 -0.20 0.33 16 12 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 13 C -0.14 -3.37 7.78 37.16 0.29 -3.08 16 14 C -0.50 -13.76 8.22 -34.44 -0.28 -14.05 16 15 H 0.06 1.69 7.70 -52.49 -0.40 1.29 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 17 N -0.89 -25.58 11.32 55.43 0.63 -24.95 16 18 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 22 C -0.07 -1.16 7.22 -39.61 -0.29 -1.44 16 23 C -0.21 -3.13 9.04 -39.44 -0.36 -3.48 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 28 H 0.06 0.56 7.66 -51.92 -0.40 0.16 16 29 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.36 6.63 5.68 45.56 0.26 6.89 16 32 H 0.02 0.53 6.78 -51.93 -0.35 0.18 16 33 H 0.01 0.32 5.90 -51.93 -0.31 0.01 16 34 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.12 1.88 6.22 -52.48 -0.33 1.55 16 37 H 0.12 1.51 6.30 -52.49 -0.33 1.18 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -30.23 299.47 -7.14 -37.37 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.66 Total: 6.09 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.95 Total: -22.87 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.63 Total: -24.95 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.64 Total: -16.65 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.23 -7.14 -37.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.807 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds