Wall clock time and date at job start Mon Mar 30 2020 06:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47285 * 2 1 4 4 C 1.35902 * 116.99503 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05216 * 179.97438 * 4 3 2 6 6 C 1.38138 * 119.94724 * 179.97438 * 5 4 3 7 7 C 1.38270 * 120.05052 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.93895 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47345 * 25.00291 * 8 7 6 10 10 O 1.42903 * 109.46442 * 145.00221 * 8 7 6 11 11 C 1.53001 * 109.47316 * 264.99984 * 8 7 6 12 12 H 1.08997 * 109.47124 * 60.00119 * 11 8 7 13 13 C 1.52998 * 109.46816 * 300.00224 * 11 8 7 14 14 C 1.50701 * 109.46986 * 180.02562 * 11 8 7 15 15 H 1.07994 * 120.00170 * 359.97438 * 14 11 8 16 16 C 1.37872 * 119.99601 * 180.02562 * 14 11 8 17 17 N 1.31511 * 120.00621 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99871 * 179.97438 * 16 14 11 19 19 H 1.48489 * 109.47236 * 89.99811 * 18 16 14 20 20 H 1.48498 * 109.47111 * 210.00181 * 18 16 14 21 21 H 1.48505 * 109.46789 * 329.99666 * 18 16 14 22 22 C 1.38265 * 120.11421 * 0.27647 * 7 6 5 23 23 C 1.38143 * 120.05439 * 359.44953 * 22 7 6 24 24 H 1.09004 * 109.46837 * 300.00223 * 1 2 3 25 25 H 1.08998 * 109.46933 * 59.99945 * 1 2 3 26 26 H 1.08998 * 109.47340 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47189 * 239.99389 * 2 1 3 28 28 H 1.09007 * 109.47056 * 120.00022 * 2 1 3 29 29 H 1.08002 * 120.02449 * 359.95907 * 5 4 3 30 30 H 1.07993 * 119.97736 * 180.02562 * 6 5 4 31 31 H 0.96700 * 114.00311 * 60.00230 * 10 8 7 32 32 H 1.09001 * 109.47666 * 299.99853 * 13 11 8 33 33 H 1.08999 * 109.47493 * 60.00111 * 13 11 8 34 34 H 1.09005 * 109.46619 * 180.02562 * 13 11 8 35 35 H 0.97002 * 120.00666 * 179.97438 * 17 16 14 36 36 H 1.08003 * 119.96829 * 179.70554 * 22 7 6 37 37 H 1.08002 * 120.02755 * 180.27532 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5251 0.0005 5 6 3.8853 2.8066 0.0000 6 6 5.2551 2.9850 0.0011 7 6 6.0963 1.8875 0.0032 8 6 7.5903 2.0850 0.0038 9 1 7.8283 3.0565 0.4369 10 8 8.2066 1.0543 0.7785 11 6 8.1133 2.0250 -1.4328 12 1 7.6432 2.8111 -2.0236 13 6 7.7793 0.6613 -2.0405 14 6 9.6074 2.2219 -1.4320 15 1 10.1315 2.3749 -0.5002 16 6 10.3051 2.2077 -2.6211 17 7 9.6670 2.0219 -3.7559 18 14 12.1571 2.4524 -2.6203 19 1 12.8304 1.1348 -2.4964 20 1 12.5710 3.1024 -3.8897 21 1 12.5419 3.3147 -1.4742 22 6 5.5690 0.6094 -0.0015 23 6 4.1998 0.4258 0.0031 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.2287 3.6641 -0.0015 30 1 5.6695 3.9823 0.0012 31 1 8.0370 0.1607 0.4502 32 1 8.2494 -0.1249 -1.4497 33 1 6.6987 0.5184 -2.0410 34 1 8.1523 0.6184 -3.0639 35 1 10.1578 2.0123 -4.5925 36 1 6.2282 -0.2462 -0.0046 37 1 3.7884 -0.5729 0.0039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:21 Heat of formation + Delta-G solvation = -94.801360 kcal Electronic energy + Delta-G solvation = -18246.179897 eV Core-core repulsion = 15373.640330 eV Total energy + Delta-G solvation = -2872.539567 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.23900 -39.63091 -37.44689 -35.28955 -33.03938 -32.38087 -31.89513 -30.35941 -27.43197 -26.40112 -24.92891 -22.96479 -22.50583 -21.07857 -19.31036 -18.56921 -17.56826 -17.00334 -16.96661 -16.71963 -15.93176 -15.74934 -14.98020 -14.80671 -14.42331 -14.38381 -14.20080 -13.71987 -13.36210 -13.24812 -12.98348 -12.75882 -12.59978 -12.56070 -12.54876 -12.15417 -12.06821 -11.78612 -11.63134 -11.45222 -10.82466 -10.61304 -10.37619 -9.88897 -8.96369 -8.06933 -6.19710 0.42165 0.48376 1.41790 1.42846 1.53237 2.29268 2.44833 2.81506 3.20247 3.80279 3.85067 3.95560 4.00266 4.08104 4.18712 4.38734 4.43827 4.46724 4.57073 4.71037 4.76124 4.90054 4.94501 4.96418 5.10141 5.16043 5.21163 5.30895 5.37045 5.42434 5.60906 5.73636 5.83080 5.90426 6.13450 6.38716 6.50043 6.88678 6.97651 7.47892 8.97251 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.045481 B = 0.004575 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.498220 B = 6119.349703 C = 6218.028014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.331 6.331 4 C 0.113 3.887 5 C -0.158 4.158 6 C -0.085 4.085 7 C -0.148 4.148 8 C 0.163 3.837 9 H 0.083 0.917 10 O -0.564 6.564 11 C 0.021 3.979 12 H 0.002 0.998 13 C -0.130 4.130 14 C -0.519 4.519 15 H 0.051 0.949 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.952 3.048 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.076 4.076 23 C -0.206 4.206 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.373 0.627 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.259 0.741 36 H 0.131 0.869 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.700 -4.853 7.066 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.068 3.932 5 C -0.177 4.177 6 C -0.103 4.103 7 C -0.148 4.148 8 C 0.104 3.896 9 H 0.101 0.899 10 O -0.371 6.371 11 C 0.002 3.998 12 H 0.021 0.979 13 C -0.187 4.187 14 C -0.557 4.557 15 H 0.069 0.931 16 C -0.186 4.186 17 N -0.559 5.559 18 Si 0.778 3.222 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.094 4.094 23 C -0.225 4.225 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.160 0.840 30 H 0.153 0.847 31 H 0.222 0.778 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.149 0.851 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.625 -4.218 7.225 17.724 hybrid contribution 1.072 -0.361 -0.767 1.367 sum -14.553 -4.580 6.459 16.567 Atomic orbital electron populations 1.21798 0.91235 1.04187 1.03202 1.23073 0.97048 0.80920 1.02162 1.86032 1.18475 1.31213 1.88816 1.19066 0.82682 0.94303 0.97161 1.20541 0.94806 0.95586 1.06736 1.20960 0.92488 0.99048 0.97815 1.20702 0.96757 0.94513 1.02869 1.20717 0.85961 0.90542 0.92367 0.89909 1.86462 1.76799 1.18174 1.55616 1.19191 0.94716 0.94617 0.91270 0.97943 1.21696 0.97313 0.97525 1.02212 1.21409 0.93438 1.48316 0.92577 0.93097 1.25685 1.02364 0.95212 0.95356 1.70021 1.36772 1.51123 0.97976 0.85643 0.80948 0.78294 0.77272 1.20209 1.21016 1.19583 1.20850 0.94922 0.96666 0.96978 1.21370 0.93557 0.98942 1.08592 0.91675 0.91938 0.88135 0.91551 0.91107 0.83950 0.84712 0.77796 0.94646 0.94615 0.92901 0.93159 0.85118 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.04 0.75 5.46 71.98 0.39 1.14 16 3 O -0.33 -8.44 10.14 -92.45 -0.94 -9.38 16 4 C 0.11 3.25 6.69 22.51 0.15 3.40 16 5 C -0.16 -4.70 9.99 22.37 0.22 -4.48 16 6 C -0.09 -2.80 9.67 22.25 0.22 -2.59 16 7 C -0.15 -5.33 4.62 -19.85 -0.09 -5.42 16 8 C 0.16 6.85 3.01 29.85 0.09 6.94 16 9 H 0.08 3.56 8.05 -2.39 -0.02 3.54 16 10 O -0.56 -23.19 12.68 -148.98 -1.89 -25.08 16 11 C 0.02 1.03 2.19 -11.54 -0.03 1.01 16 12 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 13 C -0.13 -6.07 7.78 71.98 0.56 -5.51 16 14 C -0.52 -28.85 8.22 25.60 0.21 -28.64 16 15 H 0.05 2.87 7.70 -2.91 -0.02 2.85 16 16 C 0.01 0.66 5.30 84.65 0.45 1.11 16 17 N -0.92 -53.38 11.32 21.44 0.24 -53.13 16 18 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 22 C -0.08 -2.42 7.22 22.25 0.16 -2.26 16 23 C -0.21 -5.70 9.04 22.36 0.20 -5.50 16 24 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 1.10 7.67 -2.39 -0.02 1.08 16 28 H 0.07 1.10 7.66 -2.38 -0.02 1.08 16 29 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.37 13.30 5.68 -74.06 -0.42 12.88 16 32 H 0.03 1.52 6.78 -2.39 -0.02 1.51 16 33 H 0.04 1.48 5.90 -2.39 -0.01 1.47 16 34 H 0.05 2.82 6.07 -2.38 -0.01 2.81 16 35 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.13 3.80 6.22 -2.91 -0.02 3.78 16 37 H 0.15 3.20 6.30 -2.91 -0.02 3.18 16 Total: -1.00 -64.33 299.47 3.37 -60.96 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.65 Total: 22.17 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 3.28 Total: -41.94 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.24 Total: -53.13 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -2.83 Total: -34.45 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.33 3.37 -60.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.837 kcal (2) G-P(sol) polarization free energy of solvation -64.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds