Wall clock time and date at job start Mon Mar 30 2020 06:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35995 * 116.99587 * 180.02562 * 4 3 2 6 6 C 1.38565 * 120.07439 * 359.72507 * 5 4 3 7 7 C 1.38248 * 119.99552 * 179.74455 * 6 5 4 8 8 C 1.50700 * 119.92374 * 180.25225 * 7 6 5 9 9 C 1.50700 * 109.47387 * 270.25417 * 8 7 6 10 10 H 1.07996 * 119.99862 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99851 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00130 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99727 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47180 * 90.00698 * 13 11 9 15 15 H 1.48506 * 109.47083 * 210.00478 * 13 11 9 16 16 H 1.48500 * 109.47508 * 330.00295 * 13 11 9 17 17 C 1.38246 * 120.14817 * 0.50974 * 7 6 5 18 18 C 1.38242 * 120.14884 * 359.76851 * 17 7 6 19 19 C 1.38565 * 119.99815 * 359.97438 * 18 17 7 20 20 O 1.35996 * 120.07637 * 179.97438 * 19 18 17 21 21 C 1.42898 * 116.99713 * 0.02562 * 20 19 18 22 22 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 24 24 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 25 25 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 26 26 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 27 27 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 28 28 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 29 29 H 1.07994 * 119.99980 * 359.97438 * 6 5 4 30 30 H 1.09000 * 109.47412 * 30.25759 * 8 7 6 31 31 H 1.09000 * 109.47112 * 150.25577 * 8 7 6 32 32 H 0.96998 * 120.00022 * 179.97438 * 12 11 9 33 33 H 1.08004 * 119.92680 * 179.74146 * 17 7 6 34 34 H 1.07997 * 120.00411 * 179.97438 * 18 17 7 35 35 H 1.09000 * 109.47236 * 180.02562 * 21 20 19 36 36 H 1.09005 * 109.47392 * 300.00389 * 21 20 19 37 37 H 1.09002 * 109.46922 * 59.99615 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0863 2.6542 -0.0001 6 6 3.3331 3.8173 -0.0049 7 6 3.9624 5.0483 0.0009 8 6 3.1416 6.3121 0.0015 9 6 2.8679 6.7341 -1.4191 10 1 3.2497 6.1456 -2.2402 11 6 2.1291 7.8708 -1.6704 12 7 1.6637 8.5870 -0.6705 13 14 1.7893 8.3934 -3.4313 14 1 0.5252 7.7690 -3.8978 15 1 1.6635 9.8718 -3.4934 16 1 2.9089 7.9549 -4.3027 17 6 5.3428 5.1224 0.0008 18 6 6.1002 3.9659 -0.0002 19 6 5.4759 2.7289 -0.0007 20 8 6.2195 1.5902 -0.0023 21 6 7.6402 1.7432 -0.0028 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 2.2546 3.7621 -0.0094 30 1 2.1973 6.1319 0.5153 31 1 3.6901 7.1013 0.5156 32 1 1.1443 9.3869 -0.8473 33 1 5.8307 6.0859 0.0012 34 1 7.1785 4.0265 -0.0007 35 1 8.1115 0.7603 -0.0046 36 1 7.9461 2.2940 -0.8924 37 1 7.9469 2.2921 0.8876 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062169938.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:27 Heat of formation + Delta-G solvation = -71.114216 kcal Electronic energy + Delta-G solvation = -17987.690251 eV Core-core repulsion = 15116.177836 eV Total energy + Delta-G solvation = -2871.512415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05308 -38.18788 -36.75281 -33.88258 -33.08278 -30.70681 -29.61179 -27.73610 -26.56213 -25.93348 -23.14165 -22.23168 -21.07833 -20.27755 -17.92545 -16.68352 -16.31923 -16.07908 -16.04824 -15.31876 -14.63082 -14.32796 -13.99184 -13.87809 -13.44156 -13.19241 -12.52105 -12.37501 -12.10205 -12.05086 -11.75269 -11.43102 -11.23607 -11.20046 -10.90851 -10.73920 -10.57631 -10.52017 -10.41319 -10.30522 -9.55151 -9.33779 -8.44271 -8.05283 -7.14152 -6.05563 -4.09847 1.90443 2.12044 3.28992 3.35390 3.39863 3.51553 3.64171 4.32417 4.49694 4.93948 4.94702 5.18590 5.23020 5.28323 5.31331 5.37931 5.47931 5.50389 5.57703 5.62951 5.72058 5.82370 5.91508 5.96365 6.08162 6.14539 6.18433 6.29906 6.80178 7.01101 7.11636 7.31474 7.46332 7.53364 7.82074 7.90055 8.06314 8.30502 8.95539 9.54101 11.03832 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.006427 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.075522 B = 4355.549098 C = 5689.019909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.057 3.943 4 O -0.312 6.312 5 C 0.098 3.902 6 C -0.174 4.174 7 C -0.028 4.028 8 C 0.050 3.950 9 C -0.512 4.512 10 H 0.057 0.943 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.123 4.123 18 C -0.171 4.171 19 C 0.064 3.936 20 O -0.314 6.314 21 C 0.030 3.970 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.131 0.869 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 -13.921 2.268 14.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.019 4.019 4 O -0.227 6.227 5 C 0.053 3.947 6 C -0.193 4.193 7 C -0.029 4.029 8 C 0.014 3.986 9 C -0.550 4.550 10 H 0.075 0.925 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.141 4.141 18 C -0.189 4.189 19 C 0.019 3.981 20 O -0.229 6.229 21 C -0.065 4.065 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.447 -14.149 2.307 15.010 hybrid contribution -0.160 0.792 -0.999 1.284 sum 4.287 -13.358 1.308 14.090 Atomic orbital electron populations 1.21693 0.94504 1.02077 1.02442 1.21443 0.95790 0.95258 1.03302 1.22817 0.79248 0.98131 1.01691 1.86051 1.20452 1.26649 1.89541 1.18196 0.88872 0.84830 1.02820 1.21030 0.99841 0.90943 1.07459 1.20439 0.93885 0.96197 0.92351 1.18327 0.94168 0.88399 0.97756 1.21067 1.33309 1.09118 0.91491 0.92455 1.25004 0.95694 0.96364 0.97220 1.69953 1.36146 1.16546 1.30679 0.86548 0.78749 0.77684 0.84814 1.20587 1.21128 1.19787 1.20816 0.93658 0.97339 1.02310 1.20960 0.99548 0.91329 1.07096 1.18041 0.87971 0.85665 1.06375 1.86097 1.17829 1.28876 1.90094 1.22923 0.79772 1.02903 1.00914 0.92078 0.92335 0.92249 0.91094 0.91144 0.91968 0.92188 0.85150 0.95385 0.95140 0.92827 0.85896 0.85737 0.88997 0.93154 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.39 6.30 -26.73 -0.17 -1.55 16 3 C 0.06 0.82 4.74 37.16 0.18 1.00 16 4 O -0.31 -5.64 9.92 -34.23 -0.34 -5.98 16 5 C 0.10 1.91 6.70 -39.12 -0.26 1.65 16 6 C -0.17 -3.57 8.69 -39.46 -0.34 -3.91 16 7 C -0.03 -0.63 5.07 -104.62 -0.53 -1.16 16 8 C 0.05 1.29 5.10 -29.04 -0.15 1.15 16 9 C -0.51 -14.31 9.09 -34.44 -0.31 -14.62 16 10 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 13 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.12 -2.44 9.69 -39.58 -0.38 -2.83 16 18 C -0.17 -3.00 9.04 -39.46 -0.36 -3.35 16 19 C 0.06 1.19 6.70 -39.12 -0.26 0.93 16 20 O -0.31 -5.34 10.28 -34.23 -0.35 -5.69 16 21 C 0.03 0.36 9.81 101.05 0.99 1.35 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.92 7.65 -51.93 -0.40 0.52 16 28 H 0.06 0.84 7.67 -51.93 -0.40 0.44 16 29 H 0.13 2.55 6.30 -52.49 -0.33 2.22 16 30 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 31 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 34 H 0.12 1.77 6.30 -52.49 -0.33 1.44 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 37 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -31.23 313.03 -7.18 -38.41 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.59 Total: -1.53 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -1.33 Total: -20.86 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.69 Total: -11.67 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.23 -7.18 -38.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062169938.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.704 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds