Wall clock time and date at job start Mon Mar 30 2020 06:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35995 * 116.99587 * 180.02562 * 4 3 2 6 6 C 1.38565 * 120.07439 * 359.72507 * 5 4 3 7 7 C 1.38248 * 119.99552 * 179.74455 * 6 5 4 8 8 C 1.50700 * 119.92374 * 180.25225 * 7 6 5 9 9 C 1.50700 * 109.47387 * 270.25417 * 8 7 6 10 10 H 1.07996 * 119.99862 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99851 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00130 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99727 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47180 * 90.00698 * 13 11 9 15 15 H 1.48506 * 109.47083 * 210.00478 * 13 11 9 16 16 H 1.48500 * 109.47508 * 330.00295 * 13 11 9 17 17 C 1.38246 * 120.14817 * 0.50974 * 7 6 5 18 18 C 1.38242 * 120.14884 * 359.76851 * 17 7 6 19 19 C 1.38565 * 119.99815 * 359.97438 * 18 17 7 20 20 O 1.35996 * 120.07637 * 179.97438 * 19 18 17 21 21 C 1.42898 * 116.99713 * 0.02562 * 20 19 18 22 22 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 24 24 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 25 25 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 26 26 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 27 27 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 28 28 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 29 29 H 1.07994 * 119.99980 * 359.97438 * 6 5 4 30 30 H 1.09000 * 109.47412 * 30.25759 * 8 7 6 31 31 H 1.09000 * 109.47112 * 150.25577 * 8 7 6 32 32 H 0.96998 * 120.00022 * 179.97438 * 12 11 9 33 33 H 1.08004 * 119.92680 * 179.74146 * 17 7 6 34 34 H 1.07997 * 120.00411 * 179.97438 * 18 17 7 35 35 H 1.09000 * 109.47236 * 180.02562 * 21 20 19 36 36 H 1.09005 * 109.47392 * 300.00389 * 21 20 19 37 37 H 1.09002 * 109.46922 * 59.99615 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0863 2.6542 -0.0001 6 6 3.3331 3.8173 -0.0049 7 6 3.9624 5.0483 0.0009 8 6 3.1416 6.3121 0.0015 9 6 2.8679 6.7341 -1.4191 10 1 3.2497 6.1456 -2.2402 11 6 2.1291 7.8708 -1.6704 12 7 1.6637 8.5870 -0.6705 13 14 1.7893 8.3934 -3.4313 14 1 0.5252 7.7690 -3.8978 15 1 1.6635 9.8718 -3.4934 16 1 2.9089 7.9549 -4.3027 17 6 5.3428 5.1224 0.0008 18 6 6.1002 3.9659 -0.0002 19 6 5.4759 2.7289 -0.0007 20 8 6.2195 1.5902 -0.0023 21 6 7.6402 1.7432 -0.0028 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 2.2546 3.7621 -0.0094 30 1 2.1973 6.1319 0.5153 31 1 3.6901 7.1013 0.5156 32 1 1.1443 9.3869 -0.8473 33 1 5.8307 6.0859 0.0012 34 1 7.1785 4.0265 -0.0007 35 1 8.1115 0.7603 -0.0046 36 1 7.9461 2.2940 -0.8924 37 1 7.9469 2.2921 0.8876 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062169938.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:27 Heat of formation + Delta-G solvation = -88.531925 kcal Electronic energy + Delta-G solvation = -17988.445539 eV Core-core repulsion = 15116.177836 eV Total energy + Delta-G solvation = -2872.267704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.47005 -39.47624 -38.24557 -35.28344 -34.73757 -32.46224 -31.05053 -29.23198 -27.71833 -27.34732 -25.02625 -23.46153 -22.44550 -21.70380 -19.29126 -18.50823 -18.04207 -17.45258 -17.31233 -16.58107 -16.43371 -15.64125 -15.26662 -15.03032 -14.93824 -14.46982 -14.44978 -13.73354 -13.46382 -13.20761 -13.07486 -12.98461 -12.76338 -12.48644 -12.43441 -12.25959 -11.99334 -11.94911 -11.90252 -11.54877 -11.45016 -11.24703 -10.61224 -9.58245 -8.67570 -8.18456 -6.33933 0.39651 0.56301 1.39633 1.40086 1.51884 2.23282 2.38860 2.43474 2.85624 3.10076 3.85150 3.94299 3.99148 4.11771 4.16008 4.29464 4.37480 4.46855 4.52221 4.53841 4.54596 4.63002 4.77446 4.77855 4.83891 5.08977 5.18059 5.21289 5.29446 5.33780 5.35290 5.42138 5.73184 5.78259 5.99350 6.16695 6.18055 6.68307 6.78225 7.34615 8.88549 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.006427 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.075522 B = 4355.549098 C = 5689.019909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.049 3.951 4 O -0.320 6.320 5 C 0.088 3.912 6 C -0.180 4.180 7 C -0.058 4.058 8 C 0.061 3.939 9 C -0.529 4.529 10 H 0.053 0.947 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.963 3.037 14 H -0.272 1.272 15 H -0.278 1.278 16 H -0.267 1.267 17 C -0.129 4.129 18 C -0.158 4.158 19 C 0.068 3.932 20 O -0.329 6.329 21 C 0.018 3.982 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.128 0.872 30 H 0.003 0.997 31 H 0.009 0.991 32 H 0.266 0.734 33 H 0.128 0.872 34 H 0.164 0.836 35 H 0.120 0.880 36 H 0.061 0.939 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 -15.348 1.361 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.026 4.026 4 O -0.235 6.235 5 C 0.043 3.957 6 C -0.199 4.199 7 C -0.059 4.059 8 C 0.024 3.976 9 C -0.567 4.567 10 H 0.071 0.929 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.787 3.213 14 H -0.197 1.197 15 H -0.203 1.203 16 H -0.191 1.191 17 C -0.147 4.147 18 C -0.176 4.176 19 C 0.023 3.977 20 O -0.244 6.244 21 C -0.077 4.077 22 H 0.099 0.901 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.021 0.979 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.181 0.819 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.598 -15.595 1.404 16.629 hybrid contribution -0.436 1.121 -0.664 1.374 sum 5.163 -14.474 0.740 15.385 Atomic orbital electron populations 1.21697 0.92868 1.03396 1.02447 1.21459 0.97044 0.92959 1.03659 1.23093 0.77693 1.00394 1.01422 1.86052 1.22176 1.25902 1.89325 1.18330 0.89727 0.84859 1.02782 1.20951 0.99927 0.91032 1.07988 1.20175 0.94813 0.95077 0.95811 1.18058 0.93368 0.89788 0.96400 1.21356 1.33516 1.09411 0.92369 0.92913 1.25884 0.95288 0.96285 1.01661 1.70069 1.36769 1.17049 1.32980 0.85476 0.78850 0.77504 0.79431 1.19729 1.20330 1.19102 1.20904 0.92816 0.98665 1.02343 1.21235 1.01261 0.89886 1.05258 1.18237 0.88014 0.86665 1.04783 1.86092 1.20512 1.28168 1.89649 1.23335 0.76881 1.05306 1.02144 0.90079 0.92184 0.92448 0.90880 0.90599 0.92612 0.92147 0.85462 0.97854 0.97245 0.92510 0.85414 0.81855 0.86187 0.92005 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.87 16 2 C -0.11 -2.49 6.30 30.59 0.19 -2.30 16 3 C 0.05 1.43 4.74 71.98 0.34 1.77 16 4 O -0.32 -11.44 9.92 -79.63 -0.79 -12.23 16 5 C 0.09 3.43 6.70 22.57 0.15 3.58 16 6 C -0.18 -7.60 8.69 22.35 0.19 -7.40 16 7 C -0.06 -2.67 5.07 -19.86 -0.10 -2.77 16 8 C 0.06 3.28 5.10 29.10 0.15 3.43 16 9 C -0.53 -30.36 9.09 25.60 0.23 -30.13 16 10 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 11 C 0.01 0.41 5.46 84.66 0.46 0.87 16 12 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 13 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 C -0.13 -5.10 9.69 22.27 0.22 -4.88 16 18 C -0.16 -5.23 9.04 22.35 0.20 -5.03 16 19 C 0.07 2.42 6.70 22.57 0.15 2.57 16 20 O -0.33 -10.34 10.28 -79.64 -0.82 -11.16 16 21 C 0.02 0.35 9.81 113.37 1.11 1.46 16 22 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.68 7.65 -2.39 -0.02 1.66 16 28 H 0.06 1.73 7.67 -2.39 -0.02 1.71 16 29 H 0.13 5.25 6.30 -2.91 -0.02 5.23 16 30 H 0.00 0.18 8.09 -2.39 -0.02 0.16 16 31 H 0.01 0.53 8.08 -2.39 -0.02 0.51 16 32 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 34 H 0.16 4.03 6.30 -2.91 -0.02 4.01 16 35 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.10 7.66 -2.38 -0.02 1.08 16 37 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 Total: -1.00 -67.91 313.03 5.76 -62.15 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.04 Total: 11.12 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 4.02 Total: -40.68 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.28 Total: -55.47 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -1.61 Total: -23.39 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -67.91 5.76 -62.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062169938.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.380 kcal (2) G-P(sol) polarization free energy of solvation -67.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds