Wall clock time and date at job start Mon Mar 30 2020 06:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99770 * 2 1 4 4 C 1.50697 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.38280 * 119.97205 * 270.02200 * 4 3 2 6 6 C 1.38250 * 120.10833 * 180.02562 * 5 4 3 7 7 C 1.38159 * 120.05742 * 359.68104 * 6 5 4 8 8 C 1.38710 * 119.94311 * 0.57011 * 7 6 5 9 9 O 1.35900 * 120.05544 * 179.72143 * 8 7 6 10 10 C 1.42898 * 117.00172 * 359.72769 * 9 8 7 11 11 C 1.52997 * 109.47319 * 179.97438 * 10 9 8 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46744 * 90.00434 * 17 15 13 19 19 H 1.48500 * 109.47304 * 210.00023 * 17 15 13 20 20 H 1.48498 * 109.47341 * 330.00626 * 17 15 13 21 21 C 1.38129 * 119.97079 * 89.99809 * 4 3 2 22 22 H 1.08995 * 109.47408 * 60.00257 * 1 2 3 23 23 H 1.09004 * 109.46877 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47115 * 299.99759 * 1 2 3 25 25 H 1.09005 * 109.47245 * 59.99728 * 3 2 1 26 26 H 1.09002 * 109.47248 * 300.00077 * 3 2 1 27 27 H 1.08000 * 119.95034 * 0.02562 * 5 4 3 28 28 H 1.08006 * 119.97154 * 179.97438 * 6 5 4 29 29 H 1.08006 * 120.03137 * 180.29323 * 7 6 5 30 30 H 1.09002 * 109.47259 * 300.00149 * 10 9 8 31 31 H 1.09001 * 109.47074 * 60.00171 * 10 9 8 32 32 H 1.09002 * 109.47153 * 300.00307 * 11 10 9 33 33 H 1.08998 * 109.47533 * 59.99936 * 11 10 9 34 34 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 35 35 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 36 36 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.02418 * 0.02613 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2006 1.1318 1.1988 6 6 5.5789 1.0233 1.2027 7 6 6.2716 0.9626 0.0088 8 6 5.5840 1.0226 -1.1944 9 8 6.2636 0.9688 -2.3700 10 6 7.6861 0.8564 -2.2926 11 6 8.2716 0.8093 -3.7053 12 6 9.7945 0.6883 -3.6225 13 6 10.3712 0.6414 -5.0139 14 1 9.7170 0.6931 -5.8717 15 6 11.7342 0.5334 -5.1921 16 7 12.5310 0.4709 -4.1476 17 14 12.4489 0.4745 -6.9169 18 1 12.7487 1.8546 -7.3758 19 1 13.6993 -0.3265 -6.9075 20 1 11.4670 -0.1513 -7.8386 21 6 4.2009 1.1319 -1.1957 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6885 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.6606 1.1739 2.1332 28 1 6.1141 0.9811 2.1398 29 1 7.3479 0.8730 0.0124 30 1 8.0901 1.7172 -1.7599 31 1 7.9498 -0.0572 -1.7598 32 1 7.8675 -0.0517 -4.2377 33 1 8.0079 1.7226 -4.2386 34 1 10.1989 1.5491 -3.0900 35 1 10.0579 -0.2252 -3.0894 36 1 13.4897 0.3945 -4.2729 37 1 3.6629 1.1747 -2.1311 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070095353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:27 Heat of formation + Delta-G solvation = -77.822043 kcal Electronic energy + Delta-G solvation = -17086.577537 eV Core-core repulsion = 14214.774249 eV Total energy + Delta-G solvation = -2871.803288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06182 -38.35160 -37.05873 -34.03865 -31.94545 -31.82040 -29.91576 -27.50986 -26.89074 -25.52073 -23.42195 -22.53160 -21.05807 -20.15240 -17.76368 -16.64774 -16.49911 -16.23928 -15.84710 -15.75368 -15.40194 -15.10483 -14.46477 -13.93199 -13.43139 -13.29312 -12.86851 -12.47111 -12.22769 -12.19402 -11.83242 -11.70533 -11.46160 -11.04597 -10.99444 -10.62225 -10.59505 -10.40950 -9.97475 -9.76521 -9.53759 -9.16828 -8.94120 -8.39243 -8.07391 -6.04431 -4.07014 1.20918 1.49528 3.30920 3.36483 3.38007 3.41616 3.56501 4.02731 4.44016 4.67472 4.77075 4.94027 5.01405 5.06644 5.11527 5.17963 5.31274 5.31791 5.37868 5.45086 5.54032 5.62602 5.69232 5.94821 6.03156 6.34780 6.45356 6.51370 6.55146 6.59695 6.82638 6.88349 6.98495 7.58832 7.68260 7.70700 7.94209 8.36099 8.99229 9.57375 11.07124 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.048332 B = 0.003102 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.193209 B = 9023.736372 C = 9478.145195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.105 3.895 4 C -0.059 4.059 5 C -0.146 4.146 6 C -0.082 4.082 7 C -0.203 4.203 8 C 0.138 3.862 9 O -0.316 6.316 10 C 0.058 3.942 11 C -0.108 4.108 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.138 4.138 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.470 1.942 11.260 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.029 3.971 4 C -0.060 4.060 5 C -0.165 4.165 6 C -0.100 4.100 7 C -0.222 4.222 8 C 0.092 3.908 9 O -0.229 6.229 10 C -0.016 4.016 11 C -0.146 4.146 12 C -0.013 4.013 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.156 4.156 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.150 0.850 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.232 1.762 11.097 23.142 hybrid contribution 0.537 0.173 -0.683 0.886 sum -19.694 1.935 10.413 22.362 Atomic orbital electron populations 1.22762 0.81057 1.02874 0.99948 1.88001 1.19521 1.27395 1.95390 1.21332 0.89762 0.85107 1.00935 1.19255 0.93636 1.00234 0.92829 1.20843 0.94221 1.04232 0.97173 1.20915 0.93971 0.97624 0.97519 1.21439 1.00965 1.07540 0.92245 1.19069 0.91723 0.94517 0.85499 1.86124 1.22257 1.87169 1.27374 1.23217 0.75972 1.00724 1.01676 1.21721 0.99091 1.01966 0.91816 1.19046 0.87037 0.97463 0.97713 1.21186 0.91907 1.50465 0.92344 0.92445 1.25028 0.97239 0.95206 0.97006 1.69961 1.03853 1.50411 1.29274 0.86544 0.78570 0.78056 0.84559 1.20608 1.21182 1.19797 1.20277 0.91239 1.05757 0.98376 0.93973 0.89538 0.94099 0.92296 0.92252 0.86160 0.85717 0.84986 0.92315 0.92304 0.92169 0.92194 0.96318 0.96293 0.92909 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.31 10.69 -35.23 -0.38 -4.69 16 3 C 0.10 1.04 6.06 36.00 0.22 1.25 16 4 C -0.06 -0.73 5.51 -104.65 -0.58 -1.31 16 5 C -0.15 -1.70 9.70 -39.56 -0.38 -2.08 16 6 C -0.08 -0.99 10.04 -39.61 -0.40 -1.39 16 7 C -0.20 -2.88 9.04 -39.44 -0.36 -3.24 16 8 C 0.14 2.18 6.69 -39.22 -0.26 1.92 16 9 O -0.32 -5.62 10.14 -19.43 -0.20 -5.81 16 10 C 0.06 1.05 4.74 37.16 0.18 1.23 16 11 C -0.11 -2.28 5.52 -26.74 -0.15 -2.43 16 12 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 13 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 14 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.14 -1.94 9.64 -39.43 -0.38 -2.32 16 22 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 27 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 29 H 0.13 1.80 6.30 -52.48 -0.33 1.47 16 30 H 0.06 1.00 7.67 -51.93 -0.40 0.61 16 31 H 0.06 1.02 7.65 -51.93 -0.40 0.62 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -31.33 317.47 -7.36 -38.69 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -5.74 Total: -3.44 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -1.55 Total: -20.11 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.57 Total: -10.50 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.33 -7.36 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070095353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.132 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds