Wall clock time and date at job start Mon Mar 30 2020 06:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99770 * 2 1 4 4 C 1.50697 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.38280 * 119.97205 * 270.02200 * 4 3 2 6 6 C 1.38250 * 120.10833 * 180.02562 * 5 4 3 7 7 C 1.38159 * 120.05742 * 359.68104 * 6 5 4 8 8 C 1.38710 * 119.94311 * 0.57011 * 7 6 5 9 9 O 1.35900 * 120.05544 * 179.72143 * 8 7 6 10 10 C 1.42898 * 117.00172 * 359.72769 * 9 8 7 11 11 C 1.52997 * 109.47319 * 179.97438 * 10 9 8 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46744 * 90.00434 * 17 15 13 19 19 H 1.48500 * 109.47304 * 210.00023 * 17 15 13 20 20 H 1.48498 * 109.47341 * 330.00626 * 17 15 13 21 21 C 1.38129 * 119.97079 * 89.99809 * 4 3 2 22 22 H 1.08995 * 109.47408 * 60.00257 * 1 2 3 23 23 H 1.09004 * 109.46877 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47115 * 299.99759 * 1 2 3 25 25 H 1.09005 * 109.47245 * 59.99728 * 3 2 1 26 26 H 1.09002 * 109.47248 * 300.00077 * 3 2 1 27 27 H 1.08000 * 119.95034 * 0.02562 * 5 4 3 28 28 H 1.08006 * 119.97154 * 179.97438 * 6 5 4 29 29 H 1.08006 * 120.03137 * 180.29323 * 7 6 5 30 30 H 1.09002 * 109.47259 * 300.00149 * 10 9 8 31 31 H 1.09001 * 109.47074 * 60.00171 * 10 9 8 32 32 H 1.09002 * 109.47153 * 300.00307 * 11 10 9 33 33 H 1.08998 * 109.47533 * 59.99936 * 11 10 9 34 34 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 35 35 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 36 36 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.02418 * 0.02613 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2006 1.1318 1.1988 6 6 5.5789 1.0233 1.2027 7 6 6.2716 0.9626 0.0088 8 6 5.5840 1.0226 -1.1944 9 8 6.2636 0.9688 -2.3700 10 6 7.6861 0.8564 -2.2926 11 6 8.2716 0.8093 -3.7053 12 6 9.7945 0.6883 -3.6225 13 6 10.3712 0.6414 -5.0139 14 1 9.7170 0.6931 -5.8717 15 6 11.7342 0.5334 -5.1921 16 7 12.5310 0.4709 -4.1476 17 14 12.4489 0.4745 -6.9169 18 1 12.7487 1.8546 -7.3758 19 1 13.6993 -0.3265 -6.9075 20 1 11.4670 -0.1513 -7.8386 21 6 4.2009 1.1319 -1.1957 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6885 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.6606 1.1739 2.1332 28 1 6.1141 0.9811 2.1398 29 1 7.3479 0.8730 0.0124 30 1 8.0901 1.7172 -1.7599 31 1 7.9498 -0.0572 -1.7598 32 1 7.8675 -0.0517 -4.2377 33 1 8.0079 1.7226 -4.2386 34 1 10.1989 1.5491 -3.0900 35 1 10.0579 -0.2252 -3.0894 36 1 13.4897 0.3945 -4.2729 37 1 3.6629 1.1747 -2.1311 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070095353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:27 Heat of formation + Delta-G solvation = -96.070209 kcal Electronic energy + Delta-G solvation = -17087.368837 eV Core-core repulsion = 14214.774249 eV Total energy + Delta-G solvation = -2872.594588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17604 -39.29663 -38.04086 -35.98726 -33.74374 -32.86806 -31.10886 -28.76379 -28.15775 -26.34100 -25.18536 -23.56528 -22.46072 -21.66757 -18.94913 -18.47673 -17.37062 -17.18466 -17.16143 -16.97416 -16.50981 -16.27763 -15.96854 -15.03735 -14.87738 -14.59898 -14.15275 -13.88377 -13.53784 -13.45687 -13.08570 -12.85979 -12.58841 -12.49276 -12.43447 -12.30538 -12.08944 -11.72904 -11.54593 -11.48515 -11.25771 -10.64314 -10.57976 -9.93570 -9.18561 -8.23210 -6.34202 0.21689 0.46284 1.40359 1.41600 1.52966 2.18240 2.41958 2.59186 3.10589 3.20346 3.82276 3.85255 4.02241 4.06042 4.09565 4.23210 4.35227 4.40236 4.43274 4.49623 4.57369 4.60124 4.71436 4.80148 4.89024 4.90135 5.03784 5.08377 5.33786 5.45402 5.46056 5.55680 5.63962 5.79047 5.80389 6.18754 6.21751 6.45130 6.81057 7.35073 8.88895 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.048332 B = 0.003102 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.193209 B = 9023.736372 C = 9478.145195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.104 3.896 4 C -0.063 4.063 5 C -0.141 4.141 6 C -0.082 4.082 7 C -0.216 4.216 8 C 0.106 3.894 9 O -0.332 6.332 10 C 0.071 3.929 11 C -0.096 4.096 12 C 0.029 3.971 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.264 1.264 21 C -0.150 4.150 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.131 0.869 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.000 1.000 35 H 0.000 1.000 36 H 0.265 0.735 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.913 2.205 11.834 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C 0.029 3.971 4 C -0.063 4.063 5 C -0.159 4.159 6 C -0.100 4.100 7 C -0.235 4.235 8 C 0.061 3.939 9 O -0.247 6.247 10 C -0.003 4.003 11 C -0.134 4.134 12 C -0.008 4.008 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.189 1.189 21 C -0.169 4.169 22 H 0.069 0.931 23 H 0.112 0.888 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.149 0.851 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.074 0.926 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.703 2.028 11.678 24.728 hybrid contribution 0.876 0.090 -0.755 1.160 sum -20.827 2.118 10.923 23.613 Atomic orbital electron populations 1.22956 0.79158 1.03830 1.01209 1.87944 1.21669 1.28109 1.95667 1.21411 0.88016 0.85089 1.02618 1.19630 0.95276 0.99063 0.92378 1.21261 0.94188 1.02291 0.98144 1.21276 0.94506 0.96431 0.97775 1.21579 1.01141 1.08118 0.92669 1.19355 0.92399 0.96904 0.85254 1.86039 1.21556 1.88116 1.28963 1.22875 0.76764 1.01254 0.99444 1.21435 0.96189 1.01806 0.93981 1.18907 0.90038 0.95587 0.96283 1.21627 0.92613 1.50616 0.93516 0.92169 1.25972 0.97679 0.94579 1.01494 1.70081 1.04287 1.51112 1.31680 0.85415 0.77811 0.78462 0.79185 1.19658 1.20573 1.18864 1.20469 0.90746 1.06242 0.99466 0.93111 0.88850 0.92403 0.89826 0.91380 0.83167 0.82931 0.85129 0.91706 0.91934 0.92358 0.92193 0.98128 0.98210 0.92607 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -8.48 10.69 -148.98 -1.59 -10.07 16 3 C 0.10 1.82 6.06 71.23 0.43 2.25 16 4 C -0.06 -1.45 5.51 -19.88 -0.11 -1.56 16 5 C -0.14 -2.90 9.70 22.28 0.22 -2.68 16 6 C -0.08 -1.82 10.04 22.25 0.22 -1.59 16 7 C -0.22 -6.05 9.04 22.36 0.20 -5.85 16 8 C 0.11 3.36 6.69 22.50 0.15 3.51 16 9 O -0.33 -12.06 10.14 -92.43 -0.94 -12.99 16 10 C 0.07 2.62 4.74 71.98 0.34 2.96 16 11 C -0.10 -4.16 5.52 30.59 0.17 -3.99 16 12 C 0.03 1.53 4.97 29.84 0.15 1.68 16 13 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 15 C 0.00 0.04 5.46 84.65 0.46 0.51 16 16 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 17 Si 0.97 44.41 29.54 68.60 2.03 46.43 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 C -0.15 -4.21 9.64 22.37 0.22 -3.99 16 22 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 23 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.08 1.03 8.08 -2.38 -0.02 1.01 16 26 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 27 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.13 3.58 6.30 -2.91 -0.02 3.56 16 30 H 0.06 2.27 7.67 -2.39 -0.02 2.25 16 31 H 0.06 2.22 7.65 -2.39 -0.02 2.20 16 32 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -67.47 317.47 4.74 -62.72 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.03 Total: 8.47 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 3.93 Total: -38.34 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.28 Total: -56.22 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -2.53 Total: -23.07 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.47 4.74 -62.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070095353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.346 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds