Wall clock time and date at job start Mon Mar 30 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99777 * 2 1 4 4 C 1.50704 * 109.47019 * 179.97438 * 3 2 1 5 5 O 1.34037 * 126.01995 * 269.36654 * 4 3 2 6 6 C 1.34033 * 111.11679 * 179.84335 * 5 4 3 7 7 C 1.34380 * 109.27801 * 0.40539 * 6 5 4 8 8 C 1.39216 * 126.02738 * 89.67172 * 4 3 2 9 9 C 1.41382 * 127.49539 * 0.02562 * 8 4 3 10 10 H 1.08000 * 120.00081 * 328.16708 * 9 8 4 11 11 C 1.39692 * 119.99737 * 148.16554 * 9 8 4 12 12 N 1.31022 * 120.00309 * 338.30212 * 11 9 8 13 13 Si 1.86805 * 119.99797 * 158.30631 * 11 9 8 14 14 H 1.48497 * 109.47006 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47265 * 119.99885 * 13 11 9 16 16 H 1.48505 * 109.46767 * 240.00239 * 13 11 9 17 17 C 1.50480 * 125.03108 * 179.84154 * 7 6 5 18 18 C 1.53440 * 108.37680 * 16.15650 * 17 7 6 19 19 H 1.08992 * 109.49809 * 70.72891 * 18 17 7 20 20 C 1.52997 * 109.49384 * 190.79634 * 18 17 7 21 21 C 1.53133 * 109.30576 * 310.77561 * 18 17 7 22 22 C 1.51137 * 127.19623 * 180.10000 * 6 5 4 23 23 H 1.09003 * 109.46889 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47461 * 300.00100 * 1 2 3 25 25 H 1.09001 * 109.46904 * 60.00304 * 1 2 3 26 26 H 1.08992 * 109.47001 * 299.99605 * 3 2 1 27 27 H 1.09000 * 109.46796 * 60.00086 * 3 2 1 28 28 H 0.96994 * 120.00255 * 183.96439 * 12 11 9 29 29 H 1.08997 * 109.68718 * 135.87189 * 17 7 6 30 30 H 1.08991 * 109.68417 * 256.43612 * 17 7 6 31 31 H 1.09000 * 109.47622 * 60.00091 * 20 18 17 32 32 H 1.09005 * 109.47087 * 179.97438 * 20 18 17 33 33 H 1.09000 * 109.47081 * 299.99557 * 20 18 17 34 34 H 1.08996 * 109.45388 * 189.89002 * 21 18 17 35 35 H 1.08998 * 109.45458 * 309.84851 * 21 18 17 36 36 H 1.09004 * 109.63859 * 77.59959 * 22 6 5 37 37 H 1.09006 * 109.80514 * 317.09038 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.2988 1.1365 1.0850 6 6 5.5895 1.0270 0.7409 7 6 5.6916 1.0105 -0.5989 8 6 4.3287 1.1153 -1.1249 9 6 3.9289 1.1395 -2.4808 10 1 2.9775 0.7186 -2.7709 11 6 4.7646 1.7077 -3.4453 12 7 5.6815 2.5734 -3.0897 13 14 4.5746 1.2334 -5.2421 14 1 3.4754 0.2444 -5.3794 15 1 4.2556 2.4429 -6.0423 16 1 5.8422 0.6352 -5.7327 17 6 6.9819 0.9019 -1.3656 18 6 8.0751 0.4133 -0.4061 19 1 7.8963 -0.6315 -0.1526 20 6 9.4426 0.5489 -1.0786 21 6 8.0455 1.2611 0.8689 22 6 6.7786 0.9400 1.6698 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 6.2231 3.0111 -3.7649 29 1 6.8650 0.1893 -2.1821 30 1 7.2544 1.8783 -1.7659 31 1 9.6215 1.5941 -1.3309 32 1 10.2190 0.2022 -0.3965 33 1 9.4618 -0.0527 -1.9874 34 1 8.9240 1.0373 1.4740 35 1 8.0479 2.3179 0.6022 36 1 6.8501 -0.0674 2.0800 37 1 6.6665 1.6589 2.4815 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077091475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:23 Heat of formation + Delta-G solvation = -60.670062 kcal Electronic energy + Delta-G solvation = -18924.204621 eV Core-core repulsion = 16053.145099 eV Total energy + Delta-G solvation = -2871.059523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58932 -37.07425 -36.63792 -33.86422 -31.04256 -30.80479 -29.25842 -27.13662 -25.58741 -25.15118 -24.02785 -21.67223 -20.10582 -19.63994 -17.36593 -16.76600 -15.72913 -15.21040 -15.05622 -14.80299 -14.42908 -14.18837 -13.66015 -13.34127 -12.89728 -12.68595 -12.22406 -12.16844 -11.78365 -11.72865 -11.41623 -11.24723 -11.13624 -10.93151 -10.76132 -10.63262 -10.42296 -10.07089 -9.97124 -9.83980 -9.26826 -8.99798 -8.89303 -7.46573 -6.76248 -6.57276 -4.18865 2.94494 3.16642 3.21747 3.24157 4.05043 4.08690 4.29708 4.83569 5.30996 5.34538 5.44091 5.47937 5.71267 5.76526 5.86109 5.93004 5.99826 6.03733 6.09156 6.14122 6.22876 6.29109 6.33561 6.41819 6.48865 6.55548 6.72979 6.79297 6.99232 7.26457 7.28366 7.48996 7.53668 7.85595 7.95010 8.01754 8.50767 8.90895 8.97358 9.20171 10.41482 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.010832 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.788694 B = 2584.223211 C = 4251.614727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.186 3.814 4 C -0.212 4.212 5 O -0.196 6.196 6 C -0.043 4.043 7 C -0.173 4.173 8 C 0.081 3.919 9 C -0.458 4.458 10 H 0.077 0.923 11 C 0.083 3.917 12 N -0.801 5.801 13 Si 0.896 3.104 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.274 1.274 17 C -0.023 4.023 18 C -0.100 4.100 19 H 0.061 0.939 20 C -0.141 4.141 21 C -0.104 4.104 22 C -0.025 4.025 23 H 0.075 0.925 24 H 0.031 0.969 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.274 0.726 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -1.426 3.368 4.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C 0.111 3.889 4 C -0.260 4.260 5 O -0.098 6.098 6 C -0.092 4.092 7 C -0.176 4.176 8 C 0.078 3.922 9 C -0.489 4.489 10 H 0.095 0.905 11 C -0.132 4.132 12 N -0.429 5.429 13 Si 0.722 3.278 14 H -0.187 1.187 15 H -0.204 1.204 16 H -0.200 1.200 17 C -0.060 4.060 18 C -0.119 4.119 19 H 0.080 0.920 20 C -0.198 4.198 21 C -0.141 4.141 22 C -0.063 4.063 23 H 0.094 0.906 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.104 -1.460 3.561 4.386 hybrid contribution -0.310 0.030 -1.048 1.094 sum 1.794 -1.430 2.513 3.403 Atomic orbital electron populations 1.22603 0.83084 1.01642 0.99166 1.88109 1.17810 1.30137 1.95177 1.20055 0.86329 0.83437 0.99081 1.21805 0.90204 1.30209 0.83753 1.83209 1.15398 1.75427 1.35747 1.21560 0.83394 1.09969 0.94321 1.20945 0.95670 1.09107 0.91871 1.18608 0.88827 0.92278 0.92463 1.18661 1.04026 1.36163 0.90054 0.90508 1.25645 0.93604 0.93436 1.00533 1.69907 1.18271 1.19334 1.35391 0.86457 0.79203 0.79345 0.82823 1.18651 1.20368 1.19955 1.19984 0.89278 1.01764 0.94944 1.21360 0.95515 0.99260 0.95720 0.92042 1.21784 0.96451 1.01585 1.00008 1.21545 0.95630 1.00788 0.96148 1.19967 0.89381 1.01243 0.95671 0.90639 0.95010 0.94582 0.91561 0.94590 0.91543 0.93043 0.89193 0.92808 0.93561 0.93055 0.92112 0.91588 0.91427 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.39 -8.68 10.69 -35.23 -0.38 -9.06 16 3 C 0.19 4.22 6.31 36.01 0.23 4.45 16 4 C -0.21 -5.68 7.13 -33.94 -0.24 -5.92 16 5 O -0.20 -5.14 10.52 7.14 0.08 -5.06 16 6 C -0.04 -1.03 7.19 -35.46 -0.26 -1.28 16 7 C -0.17 -4.46 5.72 -102.78 -0.59 -5.05 16 8 C 0.08 2.27 5.73 -105.03 -0.60 1.67 16 9 C -0.46 -12.67 9.00 -37.84 -0.34 -13.01 16 10 H 0.08 2.12 7.93 -52.49 -0.42 1.70 16 11 C 0.08 2.14 4.91 -17.35 -0.09 2.06 16 12 N -0.80 -20.74 10.09 55.54 0.56 -20.18 16 13 Si 0.90 19.41 29.61 -169.99 -5.03 14.38 16 14 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 C -0.02 -0.51 3.95 -27.76 -0.11 -0.62 16 18 C -0.10 -1.80 2.72 -90.32 -0.25 -2.04 16 19 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 20 C -0.14 -2.11 9.17 37.16 0.34 -1.77 16 21 C -0.10 -1.72 5.19 -26.51 -0.14 -1.86 16 22 C -0.03 -0.47 6.30 -27.52 -0.17 -0.64 16 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.47 8.00 -51.93 -0.42 1.05 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.27 6.50 8.30 -40.82 -0.34 6.16 16 29 H 0.05 1.22 8.12 -51.93 -0.42 0.80 16 30 H 0.09 2.14 6.40 -51.93 -0.33 1.81 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 35 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 302.92 15.07 4.56 4.56 Total: -1.00 -30.22 302.92 -7.10 -37.32 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.79 Total: 0.44 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -1.10 Total: -22.40 kcal Atomic # 7 Polarization: -20.74 SS G_CDS: 0.56 Total: -20.18 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.30 Total: -14.12 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.22 -7.10 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077091475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.353 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds