Wall clock time and date at job start Mon Mar 30 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99777 * 2 1 4 4 C 1.50704 * 109.47019 * 179.97438 * 3 2 1 5 5 O 1.34037 * 126.01995 * 269.36654 * 4 3 2 6 6 C 1.34033 * 111.11679 * 179.84335 * 5 4 3 7 7 C 1.34380 * 109.27801 * 0.40539 * 6 5 4 8 8 C 1.39216 * 126.02738 * 89.67172 * 4 3 2 9 9 C 1.41382 * 127.49539 * 0.02562 * 8 4 3 10 10 H 1.08000 * 120.00081 * 328.16708 * 9 8 4 11 11 C 1.39692 * 119.99737 * 148.16554 * 9 8 4 12 12 N 1.31022 * 120.00309 * 338.30212 * 11 9 8 13 13 Si 1.86805 * 119.99797 * 158.30631 * 11 9 8 14 14 H 1.48497 * 109.47006 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47265 * 119.99885 * 13 11 9 16 16 H 1.48505 * 109.46767 * 240.00239 * 13 11 9 17 17 C 1.50480 * 125.03108 * 179.84154 * 7 6 5 18 18 C 1.53440 * 108.37680 * 16.15650 * 17 7 6 19 19 H 1.08992 * 109.49809 * 70.72891 * 18 17 7 20 20 C 1.52997 * 109.49384 * 190.79634 * 18 17 7 21 21 C 1.53133 * 109.30576 * 310.77561 * 18 17 7 22 22 C 1.51137 * 127.19623 * 180.10000 * 6 5 4 23 23 H 1.09003 * 109.46889 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47461 * 300.00100 * 1 2 3 25 25 H 1.09001 * 109.46904 * 60.00304 * 1 2 3 26 26 H 1.08992 * 109.47001 * 299.99605 * 3 2 1 27 27 H 1.09000 * 109.46796 * 60.00086 * 3 2 1 28 28 H 0.96994 * 120.00255 * 183.96439 * 12 11 9 29 29 H 1.08997 * 109.68718 * 135.87189 * 17 7 6 30 30 H 1.08991 * 109.68417 * 256.43612 * 17 7 6 31 31 H 1.09000 * 109.47622 * 60.00091 * 20 18 17 32 32 H 1.09005 * 109.47087 * 179.97438 * 20 18 17 33 33 H 1.09000 * 109.47081 * 299.99557 * 20 18 17 34 34 H 1.08996 * 109.45388 * 189.89002 * 21 18 17 35 35 H 1.08998 * 109.45458 * 309.84851 * 21 18 17 36 36 H 1.09004 * 109.63859 * 77.59959 * 22 6 5 37 37 H 1.09006 * 109.80514 * 317.09038 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.2988 1.1365 1.0850 6 6 5.5895 1.0270 0.7409 7 6 5.6916 1.0105 -0.5989 8 6 4.3287 1.1153 -1.1249 9 6 3.9289 1.1395 -2.4808 10 1 2.9775 0.7186 -2.7709 11 6 4.7646 1.7077 -3.4453 12 7 5.6815 2.5734 -3.0897 13 14 4.5746 1.2334 -5.2421 14 1 3.4754 0.2444 -5.3794 15 1 4.2556 2.4429 -6.0423 16 1 5.8422 0.6352 -5.7327 17 6 6.9819 0.9019 -1.3656 18 6 8.0751 0.4133 -0.4061 19 1 7.8963 -0.6315 -0.1526 20 6 9.4426 0.5489 -1.0786 21 6 8.0455 1.2611 0.8689 22 6 6.7786 0.9400 1.6698 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 6.2231 3.0111 -3.7649 29 1 6.8650 0.1893 -2.1821 30 1 7.2544 1.8783 -1.7659 31 1 9.6215 1.5941 -1.3309 32 1 10.2190 0.2022 -0.3965 33 1 9.4618 -0.0527 -1.9874 34 1 8.9240 1.0373 1.4740 35 1 8.0479 2.3179 0.6022 36 1 6.8501 -0.0674 2.0800 37 1 6.6665 1.6589 2.4815 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077091475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:23 Heat of formation + Delta-G solvation = -78.344331 kcal Electronic energy + Delta-G solvation = -18924.971035 eV Core-core repulsion = 16053.145099 eV Total energy + Delta-G solvation = -2871.825936 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.49800 -38.68304 -38.22286 -35.81311 -32.79053 -32.49127 -30.93714 -28.87440 -27.07566 -26.86519 -25.70120 -23.30499 -21.82879 -21.39337 -19.12015 -18.70986 -17.42728 -17.06473 -16.71866 -16.42366 -16.19820 -15.89414 -15.14705 -14.82654 -14.47284 -14.34831 -13.94592 -13.57867 -13.45156 -13.32525 -13.07028 -12.96858 -12.64088 -12.53329 -12.32382 -12.21701 -12.06531 -11.89344 -11.50105 -11.34589 -10.95560 -10.90719 -10.54641 -9.46512 -8.67941 -8.52414 -6.25142 1.11103 1.37064 1.42536 1.50776 2.14534 2.25881 2.50428 3.11029 3.44526 3.92733 4.00212 4.07152 4.25617 4.34588 4.43658 4.53676 4.55560 4.61250 4.65038 4.74283 4.80148 4.87752 4.94143 4.95118 5.04049 5.08020 5.22416 5.27907 5.31582 5.39534 5.54807 5.66090 5.73487 5.93821 6.14816 6.36260 6.44646 6.90713 6.95383 7.19687 8.47896 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.010832 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.788694 B = 2584.223211 C = 4251.614727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.424 6.424 3 C 0.193 3.807 4 C -0.242 4.242 5 O -0.209 6.209 6 C -0.045 4.045 7 C -0.207 4.207 8 C 0.039 3.961 9 C -0.493 4.493 10 H 0.062 0.938 11 C 0.049 3.951 12 N -0.820 5.820 13 Si 0.965 3.035 14 H -0.268 1.268 15 H -0.264 1.264 16 H -0.265 1.265 17 C -0.014 4.014 18 C -0.097 4.097 19 H 0.061 0.939 20 C -0.134 4.134 21 C -0.097 4.097 22 C -0.025 4.025 23 H 0.098 0.902 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.283 0.717 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 -1.737 3.908 5.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.344 6.344 3 C 0.118 3.882 4 C -0.289 4.289 5 O -0.110 6.110 6 C -0.095 4.095 7 C -0.209 4.209 8 C 0.036 3.964 9 C -0.524 4.524 10 H 0.080 0.920 11 C -0.165 4.165 12 N -0.448 5.448 13 Si 0.787 3.213 14 H -0.192 1.192 15 H -0.189 1.189 16 H -0.189 1.189 17 C -0.051 4.051 18 C -0.115 4.115 19 H 0.080 0.920 20 C -0.192 4.192 21 C -0.134 4.134 22 C -0.062 4.062 23 H 0.116 0.884 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.365 -1.764 4.114 5.600 hybrid contribution -0.783 0.127 -1.160 1.406 sum 2.581 -1.638 2.954 4.251 Atomic orbital electron populations 1.22915 0.79837 1.03683 1.00716 1.88019 1.21343 1.29603 1.95446 1.19966 0.84557 0.83986 0.99677 1.22510 0.92110 1.30455 0.83841 1.83205 1.16460 1.75559 1.35826 1.22678 0.83920 1.07606 0.95301 1.21380 0.96014 1.10394 0.93128 1.19169 0.90768 0.93243 0.93216 1.18747 1.04490 1.38092 0.91081 0.92019 1.26344 0.92975 0.92750 1.04439 1.69946 1.18400 1.19339 1.37081 0.85421 0.79181 0.79217 0.77457 1.19169 1.18868 1.18941 1.19883 0.89870 1.00237 0.95123 1.21335 0.95361 0.99255 0.95594 0.92009 1.21728 0.95289 1.01702 1.00431 1.21566 0.96423 0.99730 0.95703 1.20278 0.87338 1.03226 0.95366 0.88406 0.92785 0.93621 0.92097 0.92593 0.90654 0.95690 0.90875 0.92919 0.90269 0.93350 0.87495 0.92717 0.89207 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.42 -19.00 10.69 -148.98 -1.59 -20.59 16 3 C 0.19 9.03 6.31 71.24 0.45 9.48 16 4 C -0.24 -13.45 7.13 25.92 0.18 -13.26 16 5 O -0.21 -11.16 10.52 2.64 0.03 -11.13 16 6 C -0.05 -2.20 7.19 24.94 0.18 -2.02 16 7 C -0.21 -10.96 5.72 -18.67 -0.11 -11.07 16 8 C 0.04 2.28 5.73 -20.13 -0.12 2.16 16 9 C -0.49 -28.67 9.00 23.40 0.21 -28.46 16 10 H 0.06 3.62 7.93 -2.91 -0.02 3.60 16 11 C 0.05 2.60 4.91 85.17 0.42 3.01 16 12 N -0.82 -43.56 10.09 21.79 0.22 -43.34 16 13 Si 0.97 40.59 29.61 68.60 2.03 42.63 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 16 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 17 C -0.01 -0.64 3.95 29.93 0.12 -0.53 16 18 C -0.10 -3.33 2.72 -10.60 -0.03 -3.36 16 19 H 0.06 2.12 8.12 -2.39 -0.02 2.10 16 20 C -0.13 -3.67 9.17 71.98 0.66 -3.01 16 21 C -0.10 -2.94 5.19 30.74 0.16 -2.78 16 22 C -0.03 -0.86 6.30 30.08 0.19 -0.68 16 23 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 2.83 8.00 -2.39 -0.02 2.81 16 27 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.28 13.60 8.30 -92.71 -0.77 12.83 16 29 H 0.02 1.23 8.12 -2.39 -0.02 1.21 16 30 H 0.07 3.58 6.40 -2.39 -0.02 3.57 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 2.33 8.12 -2.39 -0.02 2.31 16 35 H 0.05 1.79 8.11 -2.39 -0.02 1.77 16 36 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 Total: -1.00 -69.11 302.92 5.29 -63.82 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 1.04 Total: 17.13 kcal Atomic # 6 Polarization: -52.07 SS G_CDS: 3.57 Total: -48.50 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.22 Total: -43.34 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.56 Total: -31.73 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.63 kcal Total: -69.11 5.29 -63.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077091475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.524 kcal (2) G-P(sol) polarization free energy of solvation -69.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds