Wall clock time and date at job start Mon Mar 30 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00014 * 2 1 4 4 C 1.38759 * 120.05400 * 0.02592 * 3 2 1 5 5 C 1.38120 * 119.94342 * 179.67818 * 4 3 2 6 6 C 1.38284 * 120.05484 * 0.57169 * 5 4 3 7 7 C 1.50698 * 119.94433 * 179.72388 * 6 5 4 8 8 O 1.42904 * 109.47108 * 354.38141 * 7 6 5 9 9 C 1.38246 * 120.11104 * 359.45111 * 6 5 4 10 10 C 1.50702 * 119.96991 * 180.27293 * 9 6 5 11 11 C 1.52995 * 109.47174 * 65.15202 * 10 9 6 12 12 C 1.52998 * 109.46900 * 185.14794 * 10 9 6 13 13 C 1.50699 * 109.47176 * 305.14788 * 10 9 6 14 14 H 1.07996 * 120.00211 * 355.76940 * 13 10 9 15 15 C 1.37879 * 119.99859 * 175.77022 * 13 10 9 16 16 N 1.31512 * 120.00193 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99822 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47485 * 90.00024 * 17 15 13 19 19 H 1.48501 * 109.47007 * 209.99930 * 17 15 13 20 20 H 1.48497 * 109.47384 * 329.99673 * 17 15 13 21 21 C 1.38160 * 120.05624 * 0.25062 * 9 6 5 22 22 H 1.08997 * 109.47843 * 59.99666 * 1 2 3 23 23 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47442 * 299.99364 * 1 2 3 25 25 H 1.08004 * 120.02732 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.97203 * 180.31255 * 5 4 3 27 27 H 1.09004 * 109.47216 * 234.38680 * 7 6 5 28 28 H 1.09000 * 109.47698 * 114.38544 * 7 6 5 29 29 H 0.96701 * 113.99836 * 180.02562 * 8 7 6 30 30 H 1.08996 * 109.47709 * 49.00067 * 11 10 9 31 31 H 1.09000 * 109.47417 * 169.00772 * 11 10 9 32 32 H 1.09007 * 109.46773 * 289.00405 * 11 10 9 33 33 H 1.09005 * 109.47131 * 64.73512 * 12 10 9 34 34 H 1.09000 * 109.47490 * 184.73064 * 12 10 9 35 35 H 1.08997 * 109.47518 * 304.73121 * 12 10 9 36 36 H 0.96999 * 120.00484 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.03082 * 180.02562 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0073 6 6 3.3017 3.6758 0.0015 7 6 3.9859 5.0186 0.0026 8 8 3.0068 6.0521 -0.1220 9 6 4.0558 2.5172 0.0005 10 6 5.5607 2.5983 0.0004 11 6 6.0374 3.2300 1.3098 12 6 6.1472 1.1913 -0.1303 13 6 6.0181 3.4431 -1.1607 14 1 5.2973 3.8211 -1.8705 15 6 7.3569 3.7334 -1.3167 16 7 8.2348 3.2727 -0.4526 17 14 7.9239 4.7812 -2.7555 18 1 7.9146 6.2124 -2.3597 19 1 9.3009 4.3842 -3.1446 20 1 7.0070 4.5798 -3.9061 21 6 3.4310 1.2849 0.0000 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 0.2127 2.3203 0.0005 26 1 1.3338 4.5114 0.0128 27 1 4.6804 5.0732 -0.8358 28 1 4.5329 5.1470 0.9366 29 1 3.3768 6.9455 -0.1288 30 1 5.5488 2.7369 2.1502 31 1 7.1175 3.1128 1.3977 32 1 5.7855 4.2905 1.3144 33 1 5.8769 0.7736 -1.1001 34 1 7.2329 1.2409 -0.0460 35 1 5.7500 0.5570 0.6621 36 1 9.1766 3.4773 -0.5621 37 1 4.0206 0.3800 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082287829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:15 Heat of formation + Delta-G solvation = -60.954927 kcal Electronic energy + Delta-G solvation = -19065.030213 eV Core-core repulsion = 16193.958338 eV Total energy + Delta-G solvation = -2871.071875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.79406 -37.99024 -35.81111 -34.84678 -31.63268 -30.53756 -28.82681 -27.24882 -25.84827 -25.35619 -24.38843 -22.21649 -20.41130 -19.09172 -17.32566 -16.94731 -15.74320 -15.37813 -15.26511 -14.94721 -14.80261 -14.04640 -13.50945 -13.37661 -12.91259 -12.84444 -12.11836 -11.98536 -11.84928 -11.61137 -11.32743 -11.01764 -10.85170 -10.70256 -10.54523 -10.37745 -10.23161 -10.16500 -9.80010 -9.31588 -9.08872 -8.85571 -8.42266 -7.95345 -7.29098 -6.05105 -4.13189 2.12767 2.13224 3.23310 3.32194 3.36221 3.67807 4.33114 4.51122 4.89341 5.19979 5.20988 5.30054 5.43309 5.56775 5.60092 5.85075 6.09313 6.19450 6.24153 6.42958 6.64357 6.74349 6.75439 6.84396 6.94240 6.97354 7.01075 7.08539 7.31350 7.45789 7.47557 7.63719 7.70833 7.95627 8.01120 8.11861 8.23949 8.35330 8.84234 9.49257 10.96371 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.007743 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.498308 B = 3615.504292 C = 4188.519553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.323 6.323 3 C 0.112 3.888 4 C -0.234 4.234 5 C -0.071 4.071 6 C -0.111 4.111 7 C 0.101 3.899 8 O -0.588 6.588 9 C 0.008 3.992 10 C 0.094 3.906 11 C -0.131 4.131 12 C -0.129 4.129 13 C -0.505 4.505 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.881 5.881 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.162 4.162 22 H 0.050 0.950 23 H 0.092 0.908 24 H 0.050 0.950 25 H 0.115 0.885 26 H 0.123 0.877 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.372 0.628 30 H 0.007 0.993 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.015 0.985 36 H 0.261 0.739 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 -0.453 1.870 9.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.238 6.238 3 C 0.068 3.932 4 C -0.253 4.253 5 C -0.089 4.089 6 C -0.111 4.111 7 C 0.026 3.974 8 O -0.393 6.393 9 C 0.008 3.992 10 C 0.094 3.906 11 C -0.188 4.188 12 C -0.187 4.187 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.133 4.133 16 N -0.519 5.519 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.181 4.181 22 H 0.069 0.931 23 H 0.110 0.890 24 H 0.068 0.932 25 H 0.133 0.867 26 H 0.141 0.859 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.218 0.782 30 H 0.026 0.974 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.725 -1.176 1.894 9.978 hybrid contribution 0.369 1.093 -0.800 1.403 sum -9.356 -0.083 1.094 9.421 Atomic orbital electron populations 1.22912 0.79556 1.02958 1.00974 1.86027 1.20460 1.27836 1.89432 1.19056 0.92449 0.83480 0.98218 1.20975 0.98889 0.92583 1.12846 1.20672 0.94413 0.96417 0.97372 1.19453 0.92922 0.94361 1.04408 1.21769 0.89057 0.83648 1.02956 1.86322 1.37847 1.17715 1.97463 1.20198 0.98132 0.90099 0.90763 1.17283 0.83982 0.94311 0.95046 1.21953 1.03639 0.98568 0.94644 1.21859 1.03227 0.96105 0.97473 1.20995 0.92284 1.31628 1.09396 0.92013 1.24892 0.96641 0.95835 0.95976 1.69856 1.01968 1.44745 1.35327 0.86658 0.78204 0.80543 0.83074 1.20646 1.21150 1.19861 1.20484 0.90441 0.99048 1.08087 0.93126 0.88991 0.93158 0.86736 0.85893 0.88325 0.92143 0.78202 0.97363 0.89403 0.94164 0.94917 0.90490 0.96578 0.92921 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.32 -5.53 10.50 -19.43 -0.20 -5.73 16 3 C 0.11 2.14 6.69 -39.22 -0.26 1.88 16 4 C -0.23 -4.19 9.04 -39.43 -0.36 -4.55 16 5 C -0.07 -1.36 9.37 -39.61 -0.37 -1.73 16 6 C -0.11 -2.35 5.56 -104.60 -0.58 -2.93 16 7 C 0.10 2.01 5.77 36.00 0.21 2.22 16 8 O -0.59 -10.17 12.15 -35.23 -0.43 -10.60 16 9 C 0.01 0.18 4.69 -104.65 -0.49 -0.31 16 10 C 0.09 2.22 0.48 -156.81 -0.08 2.14 16 11 C -0.13 -3.02 7.68 37.16 0.29 -2.73 16 12 C -0.13 -3.00 6.94 37.16 0.26 -2.75 16 13 C -0.51 -12.73 5.60 -34.44 -0.19 -12.93 16 14 H 0.06 1.60 6.39 -52.49 -0.34 1.26 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 16 N -0.88 -22.96 9.56 55.43 0.53 -22.43 16 17 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 C -0.16 -3.41 8.95 -39.44 -0.35 -3.76 16 22 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 23 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 25 H 0.11 1.70 6.30 -52.48 -0.33 1.37 16 26 H 0.12 2.23 7.02 -52.49 -0.37 1.86 16 27 H 0.10 2.13 4.88 -51.93 -0.25 1.88 16 28 H 0.06 1.20 5.55 -51.93 -0.29 0.91 16 29 H 0.37 4.64 9.12 45.56 0.42 5.06 16 30 H 0.01 0.16 8.10 -51.93 -0.42 -0.26 16 31 H 0.09 2.18 6.14 -51.93 -0.32 1.86 16 32 H 0.04 0.89 4.94 -51.92 -0.26 0.64 16 33 H 0.03 0.75 8.00 -51.93 -0.42 0.33 16 34 H 0.08 1.92 6.50 -51.93 -0.34 1.58 16 35 H 0.02 0.33 6.95 -51.93 -0.36 -0.03 16 36 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 37 H 0.13 2.70 5.88 -52.49 -0.31 2.39 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -28.06 286.34 -5.77 -33.83 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -3.93 Total: 8.00 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -1.03 Total: -22.43 kcal Atomic # 7 Polarization: -22.96 SS G_CDS: 0.53 Total: -22.43 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.63 Total: -16.33 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.06 -5.77 -33.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.123 kcal (2) G-P(sol) polarization free energy of solvation -28.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds