Wall clock time and date at job start Mon Mar 30 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00014 * 2 1 4 4 C 1.38759 * 120.05400 * 0.02592 * 3 2 1 5 5 C 1.38120 * 119.94342 * 179.67818 * 4 3 2 6 6 C 1.38284 * 120.05484 * 0.57169 * 5 4 3 7 7 C 1.50698 * 119.94433 * 179.72388 * 6 5 4 8 8 O 1.42904 * 109.47108 * 354.38141 * 7 6 5 9 9 C 1.38246 * 120.11104 * 359.45111 * 6 5 4 10 10 C 1.50702 * 119.96991 * 180.27293 * 9 6 5 11 11 C 1.52995 * 109.47174 * 65.15202 * 10 9 6 12 12 C 1.52998 * 109.46900 * 185.14794 * 10 9 6 13 13 C 1.50699 * 109.47176 * 305.14788 * 10 9 6 14 14 H 1.07996 * 120.00211 * 355.76940 * 13 10 9 15 15 C 1.37879 * 119.99859 * 175.77022 * 13 10 9 16 16 N 1.31512 * 120.00193 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99822 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47485 * 90.00024 * 17 15 13 19 19 H 1.48501 * 109.47007 * 209.99930 * 17 15 13 20 20 H 1.48497 * 109.47384 * 329.99673 * 17 15 13 21 21 C 1.38160 * 120.05624 * 0.25062 * 9 6 5 22 22 H 1.08997 * 109.47843 * 59.99666 * 1 2 3 23 23 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47442 * 299.99364 * 1 2 3 25 25 H 1.08004 * 120.02732 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.97203 * 180.31255 * 5 4 3 27 27 H 1.09004 * 109.47216 * 234.38680 * 7 6 5 28 28 H 1.09000 * 109.47698 * 114.38544 * 7 6 5 29 29 H 0.96701 * 113.99836 * 180.02562 * 8 7 6 30 30 H 1.08996 * 109.47709 * 49.00067 * 11 10 9 31 31 H 1.09000 * 109.47417 * 169.00772 * 11 10 9 32 32 H 1.09007 * 109.46773 * 289.00405 * 11 10 9 33 33 H 1.09005 * 109.47131 * 64.73512 * 12 10 9 34 34 H 1.09000 * 109.47490 * 184.73064 * 12 10 9 35 35 H 1.08997 * 109.47518 * 304.73121 * 12 10 9 36 36 H 0.96999 * 120.00484 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.03082 * 180.02562 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6048 0.0073 6 6 3.3017 3.6758 0.0015 7 6 3.9859 5.0186 0.0026 8 8 3.0068 6.0521 -0.1220 9 6 4.0558 2.5172 0.0005 10 6 5.5607 2.5983 0.0004 11 6 6.0374 3.2300 1.3098 12 6 6.1472 1.1913 -0.1303 13 6 6.0181 3.4431 -1.1607 14 1 5.2973 3.8211 -1.8705 15 6 7.3569 3.7334 -1.3167 16 7 8.2348 3.2727 -0.4526 17 14 7.9239 4.7812 -2.7555 18 1 7.9146 6.2124 -2.3597 19 1 9.3009 4.3842 -3.1446 20 1 7.0070 4.5798 -3.9061 21 6 3.4310 1.2849 0.0000 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 0.2127 2.3203 0.0005 26 1 1.3338 4.5114 0.0128 27 1 4.6804 5.0732 -0.8358 28 1 4.5329 5.1470 0.9366 29 1 3.3768 6.9455 -0.1288 30 1 5.5488 2.7369 2.1502 31 1 7.1175 3.1128 1.3977 32 1 5.7855 4.2905 1.3144 33 1 5.8769 0.7736 -1.1001 34 1 7.2329 1.2409 -0.0460 35 1 5.7500 0.5570 0.6621 36 1 9.1766 3.4773 -0.5621 37 1 4.0206 0.3800 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082287829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:15 Heat of formation + Delta-G solvation = -78.619372 kcal Electronic energy + Delta-G solvation = -19065.796201 eV Core-core repulsion = 16193.958338 eV Total energy + Delta-G solvation = -2871.837863 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.26064 -39.42293 -37.29767 -36.48157 -33.47760 -32.01331 -30.41377 -28.48432 -27.52072 -27.27149 -25.93444 -23.82183 -21.92919 -20.73950 -18.90328 -18.39141 -17.48037 -16.65621 -16.56337 -16.54203 -16.41647 -15.60834 -15.12416 -14.98066 -14.58913 -14.34525 -13.67857 -13.38140 -13.32481 -13.21129 -12.92077 -12.79549 -12.61190 -12.36513 -12.18568 -12.08790 -11.81221 -11.71125 -11.55247 -11.05343 -10.74211 -10.60372 -10.35309 -9.53716 -8.79070 -7.98606 -6.11218 0.59543 0.61306 1.42781 1.47469 1.54778 2.43981 2.50143 2.95694 3.23659 3.53493 4.02737 4.09180 4.29926 4.42311 4.44081 4.54860 4.55666 4.71627 4.76324 4.85406 4.90022 4.99986 5.06926 5.11685 5.18291 5.34314 5.41307 5.49507 5.55224 5.66471 5.68470 5.87180 5.98867 6.19813 6.25591 6.43909 6.59675 6.89402 7.02381 7.52502 9.01253 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.007743 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.498308 B = 3615.504292 C = 4188.519553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.115 3.885 4 C -0.224 4.224 5 C -0.071 4.071 6 C -0.133 4.133 7 C 0.114 3.886 8 O -0.588 6.588 9 C -0.012 4.012 10 C 0.089 3.911 11 C -0.121 4.121 12 C -0.119 4.119 13 C -0.508 4.508 14 H 0.051 0.949 15 C 0.031 3.969 16 N -0.901 5.901 17 Si 0.939 3.061 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.182 4.182 22 H 0.061 0.939 23 H 0.120 0.880 24 H 0.064 0.936 25 H 0.151 0.849 26 H 0.137 0.863 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.393 0.607 30 H 0.015 0.985 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.024 0.976 34 H 0.055 0.945 35 H 0.029 0.971 36 H 0.260 0.740 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 -0.192 1.762 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.071 3.929 4 C -0.243 4.243 5 C -0.089 4.089 6 C -0.134 4.134 7 C 0.037 3.963 8 O -0.397 6.397 9 C -0.013 4.013 10 C 0.089 3.911 11 C -0.178 4.178 12 C -0.176 4.176 13 C -0.545 4.545 14 H 0.069 0.931 15 C -0.169 4.169 16 N -0.540 5.540 17 Si 0.766 3.234 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.200 4.200 22 H 0.080 0.920 23 H 0.138 0.862 24 H 0.082 0.918 25 H 0.169 0.831 26 H 0.155 0.845 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.924 -0.898 1.787 12.090 hybrid contribution 0.901 0.957 -0.758 1.517 sum -11.023 0.059 1.029 11.071 Atomic orbital electron populations 1.23319 0.76634 1.05409 1.02138 1.86017 1.23429 1.26819 1.89009 1.19065 0.91973 0.84769 0.97133 1.21315 1.00659 0.91454 1.10828 1.20880 0.93711 0.97619 0.96678 1.19637 0.93988 0.94359 1.05375 1.21402 0.88977 0.84215 1.01657 1.86266 1.37335 1.18725 1.97329 1.20073 0.97230 0.91209 0.92756 1.17252 0.85516 0.93783 0.94558 1.21811 1.02188 0.98860 0.94952 1.21724 1.01737 0.96662 0.97511 1.21109 0.92185 1.31600 1.09652 0.93093 1.25440 0.96788 0.96874 0.97824 1.69969 1.01961 1.45618 1.36415 0.85849 0.77325 0.79667 0.80571 1.19798 1.21343 1.20271 1.20514 0.91850 0.98429 1.09244 0.92002 0.86157 0.91771 0.83125 0.84510 0.90499 0.92619 0.75751 0.96598 0.91453 0.93919 0.95686 0.92587 0.95182 0.93088 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.50 16 2 O -0.34 -10.72 10.50 -92.43 -0.97 -11.69 16 3 C 0.12 4.19 6.69 22.51 0.15 4.34 16 4 C -0.22 -7.34 9.04 22.37 0.20 -7.13 16 5 C -0.07 -2.57 9.37 22.25 0.21 -2.36 16 6 C -0.13 -5.52 5.56 -19.85 -0.11 -5.63 16 7 C 0.11 4.46 5.77 71.24 0.41 4.87 16 8 O -0.59 -19.29 12.15 -148.98 -1.81 -21.10 16 9 C -0.01 -0.55 4.69 -19.88 -0.09 -0.65 16 10 C 0.09 4.27 0.48 -53.68 -0.03 4.24 16 11 C -0.12 -5.66 7.68 71.98 0.55 -5.10 16 12 C -0.12 -5.65 6.94 71.98 0.50 -5.16 16 13 C -0.51 -25.98 5.60 25.60 0.14 -25.84 16 14 H 0.05 2.68 6.39 -2.91 -0.02 2.66 16 15 C 0.03 1.57 5.15 84.66 0.44 2.01 16 16 N -0.90 -47.82 9.56 21.45 0.21 -47.62 16 17 Si 0.94 41.49 29.54 68.60 2.03 43.51 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 C -0.18 -7.58 8.95 22.36 0.20 -7.38 16 22 H 0.06 1.12 7.66 -2.39 -0.02 1.10 16 23 H 0.12 1.72 8.14 -2.38 -0.02 1.71 16 24 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 25 H 0.15 3.76 6.30 -2.91 -0.02 3.75 16 26 H 0.14 4.54 7.02 -2.91 -0.02 4.52 16 27 H 0.08 3.35 4.88 -2.38 -0.01 3.34 16 28 H 0.06 2.21 5.55 -2.39 -0.01 2.20 16 29 H 0.39 9.02 9.12 -74.06 -0.68 8.35 16 30 H 0.01 0.67 8.10 -2.39 -0.02 0.65 16 31 H 0.07 3.41 6.14 -2.39 -0.01 3.40 16 32 H 0.04 1.93 4.94 -2.38 -0.01 1.92 16 33 H 0.02 1.17 8.00 -2.38 -0.02 1.15 16 34 H 0.06 2.87 6.50 -2.39 -0.02 2.85 16 35 H 0.03 1.29 6.95 -2.39 -0.02 1.27 16 36 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 37 H 0.12 5.19 5.88 -2.91 -0.02 5.17 16 Total: -1.00 -59.62 286.34 3.56 -56.06 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.42 Total: 23.14 kcal Atomic # 6 Polarization: -45.99 SS G_CDS: 3.69 Total: -42.30 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.21 Total: -47.62 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -2.78 Total: -32.79 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -59.62 3.56 -56.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.562 kcal (2) G-P(sol) polarization free energy of solvation -59.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds