Wall clock time and date at job start Mon Mar 30 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34803 * 117.00046 * 2 1 4 4 O 1.21537 * 119.99494 * 359.97438 * 3 2 1 5 5 C 1.46948 * 120.00494 * 179.97438 * 3 2 1 6 6 C 1.33074 * 120.00521 * 179.97438 * 5 3 2 7 7 C 1.50699 * 120.00284 * 180.02562 * 6 5 3 8 8 C 1.50700 * 109.47183 * 125.00122 * 7 6 5 9 9 C 1.29452 * 117.96101 * 95.00046 * 8 7 6 10 10 C 1.50070 * 124.07339 * 179.81460 * 9 8 7 11 11 C 1.52871 * 110.23038 * 16.69650 * 10 9 8 12 12 H 1.08993 * 109.44648 * 70.56066 * 11 10 9 13 13 C 1.50703 * 109.87252 * 190.99852 * 11 10 9 14 14 H 1.08003 * 119.99545 * 119.25195 * 13 11 10 15 15 C 1.37874 * 120.00112 * 299.25601 * 13 11 10 16 16 N 1.31512 * 119.99825 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99948 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46774 * 60.00099 * 17 15 13 19 19 H 1.48497 * 109.46855 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47001 * 299.99747 * 17 15 13 21 21 C 1.53390 * 108.57462 * 310.90392 * 11 10 9 22 22 C 1.50059 * 117.96550 * 275.02362 * 8 7 6 23 23 H 1.08997 * 109.47435 * 60.00308 * 1 2 3 24 24 H 1.09007 * 109.46816 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47358 * 300.00007 * 1 2 3 26 26 H 1.08006 * 119.99878 * 0.02562 * 5 3 2 27 27 H 1.08006 * 119.99600 * 0.02562 * 6 5 3 28 28 H 1.08997 * 109.47022 * 5.00112 * 7 6 5 29 29 H 1.09003 * 109.47002 * 244.99904 * 7 6 5 30 30 H 1.08002 * 117.95997 * 359.52825 * 9 8 7 31 31 H 1.09000 * 109.35530 * 137.07589 * 10 9 8 32 32 H 1.08992 * 109.35582 * 256.66432 * 10 9 8 33 33 H 0.97008 * 119.99782 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.64688 * 307.59652 * 21 11 10 35 35 H 1.09005 * 109.81585 * 187.06811 * 21 11 10 36 36 H 1.09001 * 109.35841 * 317.31374 * 22 8 7 37 37 H 1.09000 * 109.35974 * 77.03655 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5314 1.2781 0.0006 6 6 4.1356 2.4638 0.0001 7 6 5.6405 2.5427 0.0001 8 6 6.0995 3.3824 -1.1642 9 6 6.3303 4.6385 -0.9529 10 6 6.7950 5.5973 -2.0097 11 6 6.5589 5.0069 -3.3999 12 1 5.4895 4.9884 -3.6094 13 6 7.2640 5.8419 -4.4376 14 1 8.0322 5.4003 -5.0550 15 6 6.9283 7.1694 -4.5986 16 7 5.9925 7.7069 -3.8470 17 14 7.8018 8.2042 -5.8854 18 1 7.5809 7.6127 -7.2295 19 1 7.2621 9.5874 -5.8579 20 1 9.2570 8.2353 -5.5912 21 6 7.1141 3.5772 -3.4242 22 6 6.2600 2.7105 -2.4963 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 4.1197 0.3723 0.0006 27 1 3.5473 3.3696 -0.0004 28 1 6.0569 1.5394 -0.0891 29 1 5.9805 2.9959 0.9313 30 1 6.1745 5.0212 0.0450 31 1 6.2454 6.5338 -1.9148 32 1 7.8597 5.7907 -1.8790 33 1 5.7566 8.6410 -3.9600 34 1 8.1470 3.5791 -3.0760 35 1 7.0702 3.1810 -4.4388 36 1 6.7444 1.7440 -2.3574 37 1 5.2786 2.5614 -2.9464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082287866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:10 Heat of formation + Delta-G solvation = -78.714767 kcal Electronic energy + Delta-G solvation = -17630.571434 eV Core-core repulsion = 14758.729434 eV Total energy + Delta-G solvation = -2871.842000 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31012 -38.13226 -36.59923 -34.82764 -32.73303 -30.76973 -29.60776 -28.24079 -26.68518 -24.31858 -22.42491 -22.09406 -20.13886 -19.50163 -17.84191 -16.73943 -16.65182 -16.36307 -16.27654 -14.71447 -14.32052 -14.09153 -13.88010 -13.42027 -13.29006 -12.92098 -12.53819 -12.36723 -12.11811 -11.83639 -11.59194 -11.29190 -11.16644 -10.90051 -10.87757 -10.71931 -10.56961 -10.34885 -10.21983 -9.54743 -9.37236 -8.95557 -8.67570 -8.39529 -7.96916 -5.96868 -4.02170 1.14318 2.65326 2.91300 3.04797 3.33389 3.38265 3.40658 4.45841 4.78189 4.95560 4.98748 5.03368 5.22286 5.30403 5.34092 5.34958 5.43107 5.76376 5.86072 6.01990 6.09293 6.18645 6.37158 6.38912 6.40232 6.53723 6.74469 6.82766 7.02453 7.07574 7.20408 7.40075 7.69820 7.74151 7.84561 8.03324 8.12333 8.48291 9.02012 9.62539 11.10065 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032997 B = 0.004022 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.353580 B = 6959.532365 C = 7252.597569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.496 3.504 4 O -0.515 6.515 5 C -0.221 4.221 6 C -0.017 4.017 7 C -0.064 4.064 8 C -0.159 4.159 9 C -0.115 4.115 10 C -0.086 4.086 11 C 0.051 3.949 12 H 0.026 0.974 13 C -0.515 4.515 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.110 4.110 22 C -0.073 4.073 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.137 0.863 27 H 0.129 0.871 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.260 0.740 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 -13.467 9.061 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.343 3.657 4 O -0.405 6.405 5 C -0.240 4.240 6 C -0.036 4.036 7 C -0.101 4.101 8 C -0.159 4.159 9 C -0.133 4.133 10 C -0.123 4.123 11 C 0.032 3.968 12 H 0.044 0.956 13 C -0.553 4.553 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.147 4.147 22 C -0.110 4.110 23 H 0.081 0.919 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.155 0.845 27 H 0.146 0.854 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.279 -13.014 9.095 16.732 hybrid contribution 0.108 0.691 -0.614 0.931 sum -5.171 -12.323 8.481 15.827 Atomic orbital electron populations 1.23231 0.76523 1.03449 1.02577 1.86588 1.23245 1.33177 1.84608 1.21693 0.90314 0.81152 0.72560 1.90866 1.67256 1.36033 1.46355 1.21812 0.89414 0.99920 1.12836 1.24080 0.97206 0.97669 0.84624 1.20050 0.90365 1.01337 0.98354 1.20450 1.05541 0.94995 0.94896 1.22568 0.96479 0.94644 0.99594 1.20626 0.99708 0.98370 0.93634 1.18654 0.96514 0.89389 0.92215 0.95564 1.21185 1.20628 0.95015 1.18509 0.92750 1.24982 0.95036 0.97966 0.95975 1.69892 1.30509 1.13231 1.39355 0.86699 0.79927 0.79358 0.82243 1.20336 1.21360 1.20341 1.21684 0.98050 0.97953 0.97038 1.20331 1.00083 0.97558 0.93054 0.91866 0.88228 0.92024 0.84484 0.85360 0.90504 0.89472 0.89629 0.88832 0.92726 0.93000 0.93360 0.93174 0.92944 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.40 10.58 -40.77 -0.43 -4.83 16 3 C 0.50 7.02 7.91 34.26 0.27 7.29 16 4 O -0.52 -8.80 16.01 -19.29 -0.31 -9.11 16 5 C -0.22 -2.74 9.76 -37.85 -0.37 -3.11 16 6 C -0.02 -0.23 9.08 -36.10 -0.33 -0.56 16 7 C -0.06 -0.82 5.67 -29.04 -0.16 -0.98 16 8 C -0.16 -2.67 5.07 -100.95 -0.51 -3.18 16 9 C -0.11 -2.16 9.37 -35.90 -0.34 -2.50 16 10 C -0.09 -2.00 5.06 -28.25 -0.14 -2.14 16 11 C 0.05 1.26 2.12 -91.63 -0.19 1.06 16 12 H 0.03 0.72 8.12 -51.93 -0.42 0.30 16 13 C -0.52 -14.12 8.55 -34.44 -0.29 -14.41 16 14 H 0.05 1.47 7.75 -52.48 -0.41 1.06 16 15 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 16 N -0.89 -25.49 11.54 55.43 0.64 -24.85 16 17 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.11 -2.27 5.25 -26.52 -0.14 -2.41 16 22 C -0.07 -1.28 5.80 -28.18 -0.16 -1.44 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.14 1.37 7.87 -52.48 -0.41 0.95 16 27 H 0.13 1.91 7.49 -52.48 -0.39 1.52 16 28 H 0.08 0.84 7.77 -51.93 -0.40 0.44 16 29 H 0.09 0.99 7.80 -51.93 -0.41 0.59 16 30 H 0.09 1.43 7.75 -52.49 -0.41 1.02 16 31 H 0.09 2.42 6.52 -51.93 -0.34 2.08 16 32 H 0.05 1.29 8.09 -51.93 -0.42 0.87 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 312.91 15.07 4.72 4.72 Total: -1.00 -30.24 312.91 -7.51 -37.75 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.70 Total: -0.56 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -1.40 Total: -19.37 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.64 Total: -24.85 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.74 Total: -13.94 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.24 -7.51 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.968 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds