Wall clock time and date at job start Mon Mar 30 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34803 * 117.00046 * 2 1 4 4 O 1.21537 * 119.99494 * 359.97438 * 3 2 1 5 5 C 1.46948 * 120.00494 * 179.97438 * 3 2 1 6 6 C 1.33074 * 120.00521 * 179.97438 * 5 3 2 7 7 C 1.50699 * 120.00284 * 180.02562 * 6 5 3 8 8 C 1.50700 * 109.47183 * 125.00122 * 7 6 5 9 9 C 1.29452 * 117.96101 * 95.00046 * 8 7 6 10 10 C 1.50070 * 124.07339 * 179.81460 * 9 8 7 11 11 C 1.52871 * 110.23038 * 16.69650 * 10 9 8 12 12 H 1.08993 * 109.44648 * 70.56066 * 11 10 9 13 13 C 1.50703 * 109.87252 * 190.99852 * 11 10 9 14 14 H 1.08003 * 119.99545 * 119.25195 * 13 11 10 15 15 C 1.37874 * 120.00112 * 299.25601 * 13 11 10 16 16 N 1.31512 * 119.99825 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99948 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46774 * 60.00099 * 17 15 13 19 19 H 1.48497 * 109.46855 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47001 * 299.99747 * 17 15 13 21 21 C 1.53390 * 108.57462 * 310.90392 * 11 10 9 22 22 C 1.50059 * 117.96550 * 275.02362 * 8 7 6 23 23 H 1.08997 * 109.47435 * 60.00308 * 1 2 3 24 24 H 1.09007 * 109.46816 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47358 * 300.00007 * 1 2 3 26 26 H 1.08006 * 119.99878 * 0.02562 * 5 3 2 27 27 H 1.08006 * 119.99600 * 0.02562 * 6 5 3 28 28 H 1.08997 * 109.47022 * 5.00112 * 7 6 5 29 29 H 1.09003 * 109.47002 * 244.99904 * 7 6 5 30 30 H 1.08002 * 117.95997 * 359.52825 * 9 8 7 31 31 H 1.09000 * 109.35530 * 137.07589 * 10 9 8 32 32 H 1.08992 * 109.35582 * 256.66432 * 10 9 8 33 33 H 0.97008 * 119.99782 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.64688 * 307.59652 * 21 11 10 35 35 H 1.09005 * 109.81585 * 187.06811 * 21 11 10 36 36 H 1.09001 * 109.35841 * 317.31374 * 22 8 7 37 37 H 1.09000 * 109.35974 * 77.03655 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5314 1.2781 0.0006 6 6 4.1356 2.4638 0.0001 7 6 5.6405 2.5427 0.0001 8 6 6.0995 3.3824 -1.1642 9 6 6.3303 4.6385 -0.9529 10 6 6.7950 5.5973 -2.0097 11 6 6.5589 5.0069 -3.3999 12 1 5.4895 4.9884 -3.6094 13 6 7.2640 5.8419 -4.4376 14 1 8.0322 5.4003 -5.0550 15 6 6.9283 7.1694 -4.5986 16 7 5.9925 7.7069 -3.8470 17 14 7.8018 8.2042 -5.8854 18 1 7.5809 7.6127 -7.2295 19 1 7.2621 9.5874 -5.8579 20 1 9.2570 8.2353 -5.5912 21 6 7.1141 3.5772 -3.4242 22 6 6.2600 2.7105 -2.4963 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 4.1197 0.3723 0.0006 27 1 3.5473 3.3696 -0.0004 28 1 6.0569 1.5394 -0.0891 29 1 5.9805 2.9959 0.9313 30 1 6.1745 5.0212 0.0450 31 1 6.2454 6.5338 -1.9148 32 1 7.8597 5.7907 -1.8790 33 1 5.7566 8.6410 -3.9600 34 1 8.1470 3.5791 -3.0760 35 1 7.0702 3.1810 -4.4388 36 1 6.7444 1.7440 -2.3574 37 1 5.2786 2.5614 -2.9464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082287866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:09 Heat of formation + Delta-G solvation = -94.498103 kcal Electronic energy + Delta-G solvation = -17631.255851 eV Core-core repulsion = 14758.729434 eV Total energy + Delta-G solvation = -2872.526416 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.35888 -39.63108 -37.65593 -36.21116 -34.50160 -32.31721 -31.21972 -29.30979 -27.99502 -26.00983 -23.92430 -23.36675 -21.82595 -20.53319 -18.90080 -18.45664 -18.09255 -17.74944 -17.34113 -16.62983 -15.78378 -15.24377 -15.01386 -14.65556 -14.47765 -14.33895 -14.15634 -13.96919 -13.33255 -13.10486 -12.96089 -12.88734 -12.72828 -12.61077 -12.34846 -12.15936 -12.00380 -11.82568 -11.63095 -11.31708 -10.80141 -10.68601 -10.50045 -10.31706 -9.48635 -8.08489 -6.22193 0.09455 1.41001 1.41963 1.44949 1.50070 1.84883 1.96713 2.43562 3.18978 3.82448 3.94884 4.02854 4.17771 4.27771 4.31240 4.35515 4.45680 4.58658 4.66523 4.68711 4.87648 4.92218 4.96052 5.07125 5.13927 5.20435 5.25554 5.34140 5.37821 5.39221 5.49683 5.61832 5.85512 6.03576 6.14598 6.34023 6.40861 6.70562 6.91164 7.46181 8.96555 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032997 B = 0.004022 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.353580 B = 6959.532365 C = 7252.597569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.491 3.509 4 O -0.555 6.555 5 C -0.206 4.206 6 C -0.028 4.028 7 C -0.054 4.054 8 C -0.136 4.136 9 C -0.148 4.148 10 C -0.075 4.075 11 C 0.044 3.956 12 H -0.013 1.013 13 C -0.537 4.537 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.919 5.919 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.269 1.269 21 C -0.105 4.105 22 C -0.074 4.074 23 H 0.056 0.944 24 H 0.136 0.864 25 H 0.061 0.939 26 H 0.172 0.828 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.259 0.741 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 -16.011 9.699 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.339 3.661 4 O -0.448 6.448 5 C -0.225 4.225 6 C -0.047 4.047 7 C -0.090 4.090 8 C -0.136 4.136 9 C -0.166 4.166 10 C -0.113 4.113 11 C 0.026 3.974 12 H 0.005 0.995 13 C -0.575 4.575 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.779 3.221 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.194 1.194 21 C -0.142 4.142 22 C -0.111 4.111 23 H 0.075 0.925 24 H 0.154 0.846 25 H 0.080 0.920 26 H 0.190 0.810 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.624 -15.588 9.733 18.950 hybrid contribution -0.188 1.397 -0.841 1.642 sum -4.811 -14.191 8.892 17.424 Atomic orbital electron populations 1.23549 0.74864 1.05807 1.02328 1.86580 1.24925 1.32000 1.83941 1.22143 0.91180 0.81104 0.71624 1.90856 1.68269 1.37403 1.48241 1.22057 0.88573 1.00818 1.11023 1.23923 0.97435 0.97245 0.86085 1.20028 0.89622 1.02316 0.97053 1.20775 1.02077 0.94637 0.96079 1.22362 0.99906 0.94991 0.99326 1.20294 0.98427 0.98104 0.94470 1.18636 0.93972 0.92159 0.92634 0.99503 1.21613 1.20804 0.95838 1.19291 0.92875 1.25788 0.95769 0.99249 0.97978 1.70054 1.31763 1.13347 1.40718 0.85684 0.79058 0.77613 0.79748 1.19703 1.21086 1.19442 1.21574 0.98665 0.95837 0.98169 1.20383 0.99587 0.98668 0.92465 0.92498 0.84575 0.91999 0.81020 0.87891 0.87117 0.87587 0.87587 0.92576 0.94199 0.93157 0.92999 0.93346 0.88842 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.57 113.37 1.20 1.65 16 2 O -0.36 -7.98 10.58 -57.14 -0.60 -8.58 16 3 C 0.49 13.15 7.91 70.10 0.55 13.70 16 4 O -0.55 -18.95 16.01 19.71 0.32 -18.63 16 5 C -0.21 -4.47 9.76 23.40 0.23 -4.24 16 6 C -0.03 -0.68 9.08 24.53 0.22 -0.46 16 7 C -0.05 -1.16 5.67 29.10 0.17 -0.99 16 8 C -0.14 -4.26 5.07 -15.11 -0.08 -4.34 16 9 C -0.15 -5.54 9.37 27.03 0.25 -5.29 16 10 C -0.08 -3.64 5.06 29.61 0.15 -3.49 16 11 C 0.04 2.28 2.12 -11.45 -0.02 2.26 16 12 H -0.01 -0.77 8.12 -2.39 -0.02 -0.79 16 13 C -0.54 -30.33 8.55 25.60 0.22 -30.11 16 14 H 0.05 2.92 7.75 -2.91 -0.02 2.90 16 15 C 0.01 0.60 5.31 84.65 0.45 1.05 16 16 N -0.92 -54.72 11.54 21.45 0.25 -54.48 16 17 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C -0.10 -4.29 5.25 30.73 0.16 -4.13 16 22 C -0.07 -2.41 5.80 29.65 0.17 -2.24 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.14 1.18 8.14 -2.38 -0.02 1.17 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.17 2.51 7.87 -2.91 -0.02 2.49 16 27 H 0.10 3.06 7.49 -2.91 -0.02 3.03 16 28 H 0.11 1.73 7.77 -2.39 -0.02 1.71 16 29 H 0.11 1.96 7.80 -2.39 -0.02 1.94 16 30 H 0.11 3.48 7.75 -2.91 -0.02 3.46 16 31 H 0.06 3.08 6.52 -2.39 -0.02 3.07 16 32 H 0.04 1.96 8.09 -2.39 -0.02 1.94 16 33 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 34 H 0.05 2.06 8.13 -2.39 -0.02 2.04 16 35 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.09 2.34 8.11 -2.39 -0.02 2.32 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -68.88 312.91 6.69 -62.19 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.03 Total: 9.70 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 3.67 Total: -36.63 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.25 Total: -54.48 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.29 Total: -27.21 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -68.88 6.69 -62.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082287866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.312 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds