Wall clock time and date at job start Mon Mar 30 2020 06:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46978 * 2 1 4 4 C 1.53002 * 109.46978 * 179.97438 * 3 2 1 5 5 O 1.42893 * 109.46851 * 180.02562 * 4 3 2 6 6 C 1.35744 * 116.99991 * 179.97438 * 5 4 3 7 7 C 1.39152 * 119.83647 * 359.72311 * 6 5 4 8 8 C 1.36464 * 120.35845 * 179.75470 * 7 6 5 9 9 C 1.40842 * 120.02903 * 0.52090 * 8 7 6 10 10 C 1.41199 * 120.15972 * 179.75474 * 9 8 7 11 11 H 1.08002 * 120.00614 * 204.60733 * 10 9 8 12 12 C 1.39881 * 119.99702 * 24.61401 * 10 9 8 13 13 N 1.30884 * 120.00140 * 17.97515 * 12 10 9 14 14 Si 1.86800 * 119.99700 * 197.98113 * 12 10 9 15 15 H 1.48493 * 109.47348 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47270 * 119.99996 * 14 12 10 17 17 H 1.48505 * 109.46829 * 239.99658 * 14 12 10 18 18 C 1.40797 * 119.68474 * 359.73785 * 9 8 7 19 19 C 1.37817 * 119.64304 * 0.02562 * 18 9 8 20 20 O 1.35972 * 120.01681 * 180.02562 * 19 18 9 21 21 C 1.42900 * 116.99967 * 359.97433 * 20 19 18 22 22 H 1.09002 * 109.47269 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47094 * 299.99998 * 1 2 3 24 24 H 1.09002 * 109.47227 * 60.00046 * 1 2 3 25 25 H 1.08998 * 109.47094 * 240.00002 * 2 1 3 26 26 H 1.08997 * 109.46769 * 119.99959 * 2 1 3 27 27 H 1.09000 * 109.47020 * 59.99567 * 3 2 1 28 28 H 1.08999 * 109.46635 * 299.99857 * 3 2 1 29 29 H 1.08997 * 109.46769 * 299.99959 * 4 3 2 30 30 H 1.09004 * 109.46958 * 59.99564 * 4 3 2 31 31 H 1.08004 * 119.82165 * 0.02818 * 7 6 5 32 32 H 1.07996 * 119.98434 * 180.25321 * 8 7 6 33 33 H 0.96995 * 119.99993 * 180.02562 * 13 12 10 34 34 H 1.08008 * 120.17616 * 180.02562 * 18 9 8 35 35 H 1.09000 * 109.47177 * 299.99954 * 21 20 19 36 36 H 1.09001 * 109.47036 * 60.00570 * 21 20 19 37 37 H 1.09006 * 109.46670 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0012 6 6 5.3920 2.9677 0.0024 7 6 6.2365 1.8618 0.0088 8 6 7.5910 2.0283 0.0050 9 6 8.1418 3.3245 0.0056 10 6 9.5428 3.5000 0.0069 11 1 9.9727 4.4108 0.3968 12 6 10.3740 2.4942 -0.4970 13 7 9.8797 1.5659 -1.2762 14 14 12.1896 2.4757 -0.0578 15 1 12.4957 3.6256 0.8305 16 1 12.5166 1.2078 0.6426 17 1 12.9999 2.5793 -1.2980 18 6 7.2887 4.4446 0.0046 19 6 5.9228 4.2611 0.0035 20 8 5.0919 5.3375 0.0020 21 6 5.7033 6.6290 0.0022 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9329 0.9289 0.8909 30 1 3.9337 0.9285 -0.8891 31 1 5.8178 0.8662 0.0123 32 1 8.2408 1.1657 0.0058 33 1 10.4561 0.8682 -1.6253 34 1 7.7025 5.4423 0.0047 35 1 6.3221 6.7380 0.8929 36 1 6.3242 6.7372 -0.8871 37 1 4.9298 7.3971 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083593126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:43 Heat of formation + Delta-G solvation = -77.148883 kcal Electronic energy + Delta-G solvation = -17944.081239 eV Core-core repulsion = 15072.307141 eV Total energy + Delta-G solvation = -2871.774098 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.16343 -37.58030 -36.05863 -34.84857 -33.11917 -29.77296 -29.20700 -28.31307 -26.62643 -24.73166 -23.45065 -21.32784 -20.75194 -20.14181 -17.88128 -16.84367 -15.86221 -15.66207 -15.44779 -14.86193 -14.79493 -14.16443 -13.91818 -13.53523 -13.34298 -12.93904 -12.50750 -12.32009 -11.89912 -11.73334 -11.43317 -11.25677 -11.18847 -11.07957 -10.82806 -10.70508 -10.56314 -10.52277 -10.11468 -9.90532 -9.70740 -9.55705 -8.96884 -7.43298 -6.79032 -6.66176 -4.31023 2.72299 2.94330 3.06224 3.11408 3.19817 3.91339 4.14398 4.28255 4.57300 4.97802 5.11104 5.17609 5.43586 5.60936 5.67577 5.72517 5.74939 5.82450 5.84179 5.90947 5.93964 6.00142 6.09540 6.19777 6.35134 6.36185 6.64544 6.76872 6.82116 7.01857 7.21511 7.35132 7.86980 7.88620 8.09166 8.24341 8.45893 8.69443 8.86042 9.02897 10.16539 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.005250 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.665898 B = 5331.731034 C = 6417.340738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.067 3.933 5 O -0.320 6.320 6 C -0.029 4.029 7 C -0.145 4.145 8 C -0.157 4.157 9 C 0.116 3.884 10 C -0.461 4.461 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.794 5.794 14 Si 0.908 3.092 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.275 1.275 18 C -0.281 4.281 19 C 0.122 3.878 20 O -0.323 6.323 21 C 0.036 3.964 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.280 0.720 34 H 0.108 0.892 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 -1.080 1.703 8.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.010 4.010 5 O -0.236 6.236 6 C -0.073 4.073 7 C -0.164 4.164 8 C -0.177 4.177 9 C 0.113 3.887 10 C -0.491 4.491 11 H 0.096 0.904 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.732 3.268 15 H -0.184 1.184 16 H -0.197 1.197 17 H -0.200 1.200 18 C -0.301 4.301 19 C 0.078 3.922 20 O -0.238 6.238 21 C -0.060 4.060 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.910 -1.133 1.557 9.116 hybrid contribution 1.302 -0.204 0.040 1.318 sum -7.608 -1.337 1.597 7.888 Atomic orbital electron populations 1.21748 0.95679 1.01398 1.01913 1.21438 0.95892 0.96387 1.02248 1.21524 0.94004 0.96780 1.03138 1.22462 0.93888 0.84347 1.00260 1.85875 1.20136 1.26068 1.91551 1.17742 0.81278 0.90906 1.17382 1.20426 0.94676 0.95202 1.06122 1.20891 0.92591 0.98204 1.05982 1.17357 0.93040 0.90301 0.87967 1.19488 0.90911 1.02558 1.36098 0.90413 1.25895 1.01355 0.94337 0.92546 1.69861 1.38056 1.11727 1.22304 0.86274 0.81861 0.79383 0.79281 1.18409 1.19688 1.20011 1.20883 0.90359 0.98912 1.19981 1.17983 0.88662 0.83756 1.01839 1.86008 1.34778 1.12931 1.90086 1.22786 0.98684 0.83643 1.00895 0.92832 0.92704 0.92695 0.91830 0.91863 0.91321 0.91293 0.93450 0.93369 0.87998 0.85970 0.90920 0.87446 0.93538 0.93429 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.35 5.93 -26.73 -0.16 -1.51 16 3 C -0.12 -1.62 5.58 -26.73 -0.15 -1.76 16 4 C 0.07 1.16 4.73 37.16 0.18 1.34 16 5 O -0.32 -7.16 9.90 -33.47 -0.33 -7.49 16 6 C -0.03 -0.72 6.73 -38.65 -0.26 -0.98 16 7 C -0.15 -3.51 8.96 -39.88 -0.36 -3.86 16 8 C -0.16 -4.12 8.63 -39.24 -0.34 -4.46 16 9 C 0.12 3.12 5.57 -106.82 -0.60 2.53 16 10 C -0.46 -12.19 9.04 -37.84 -0.34 -12.53 16 11 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 12 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 13 N -0.79 -20.39 10.96 55.54 0.61 -19.78 16 14 Si 0.91 18.48 29.60 -169.99 -5.03 13.45 16 15 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 18 C -0.28 -7.08 8.78 -38.77 -0.34 -7.42 16 19 C 0.12 3.01 6.70 -39.15 -0.26 2.75 16 20 O -0.32 -7.28 10.28 -34.19 -0.35 -7.63 16 21 C 0.04 0.61 9.81 101.05 0.99 1.60 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.80 7.63 -51.93 -0.40 0.40 16 30 H 0.05 0.83 7.66 -51.93 -0.40 0.43 16 31 H 0.10 2.17 6.26 -52.48 -0.33 1.85 16 32 H 0.12 3.26 6.16 -52.49 -0.32 2.93 16 33 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 34 H 0.11 2.50 6.29 -52.48 -0.33 2.17 16 35 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 36 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 308.22 15.07 4.64 4.64 Total: -1.00 -29.32 308.22 -7.32 -36.64 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.50 Total: 3.70 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -1.36 Total: -23.53 kcal Atomic # 7 Polarization: -20.39 SS G_CDS: 0.61 Total: -19.78 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.68 Total: -15.13 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.32 -7.32 -36.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083593126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.511 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds