Wall clock time and date at job start Mon Mar 30 2020 06:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46978 * 2 1 4 4 C 1.53002 * 109.46978 * 179.97438 * 3 2 1 5 5 O 1.42893 * 109.46851 * 180.02562 * 4 3 2 6 6 C 1.35744 * 116.99991 * 179.97438 * 5 4 3 7 7 C 1.39152 * 119.83647 * 359.72311 * 6 5 4 8 8 C 1.36464 * 120.35845 * 179.75470 * 7 6 5 9 9 C 1.40842 * 120.02903 * 0.52090 * 8 7 6 10 10 C 1.41199 * 120.15972 * 179.75474 * 9 8 7 11 11 H 1.08002 * 120.00614 * 204.60733 * 10 9 8 12 12 C 1.39881 * 119.99702 * 24.61401 * 10 9 8 13 13 N 1.30884 * 120.00140 * 17.97515 * 12 10 9 14 14 Si 1.86800 * 119.99700 * 197.98113 * 12 10 9 15 15 H 1.48493 * 109.47348 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47270 * 119.99996 * 14 12 10 17 17 H 1.48505 * 109.46829 * 239.99658 * 14 12 10 18 18 C 1.40797 * 119.68474 * 359.73785 * 9 8 7 19 19 C 1.37817 * 119.64304 * 0.02562 * 18 9 8 20 20 O 1.35972 * 120.01681 * 180.02562 * 19 18 9 21 21 C 1.42900 * 116.99967 * 359.97433 * 20 19 18 22 22 H 1.09002 * 109.47269 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47094 * 299.99998 * 1 2 3 24 24 H 1.09002 * 109.47227 * 60.00046 * 1 2 3 25 25 H 1.08998 * 109.47094 * 240.00002 * 2 1 3 26 26 H 1.08997 * 109.46769 * 119.99959 * 2 1 3 27 27 H 1.09000 * 109.47020 * 59.99567 * 3 2 1 28 28 H 1.08999 * 109.46635 * 299.99857 * 3 2 1 29 29 H 1.08997 * 109.46769 * 299.99959 * 4 3 2 30 30 H 1.09004 * 109.46958 * 59.99564 * 4 3 2 31 31 H 1.08004 * 119.82165 * 0.02818 * 7 6 5 32 32 H 1.07996 * 119.98434 * 180.25321 * 8 7 6 33 33 H 0.96995 * 119.99993 * 180.02562 * 13 12 10 34 34 H 1.08008 * 120.17616 * 180.02562 * 18 9 8 35 35 H 1.09000 * 109.47177 * 299.99954 * 21 20 19 36 36 H 1.09001 * 109.47036 * 60.00570 * 21 20 19 37 37 H 1.09006 * 109.46670 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0012 6 6 5.3920 2.9677 0.0024 7 6 6.2365 1.8618 0.0088 8 6 7.5910 2.0283 0.0050 9 6 8.1418 3.3245 0.0056 10 6 9.5428 3.5000 0.0069 11 1 9.9727 4.4108 0.3968 12 6 10.3740 2.4942 -0.4970 13 7 9.8797 1.5659 -1.2762 14 14 12.1896 2.4757 -0.0578 15 1 12.4957 3.6256 0.8305 16 1 12.5166 1.2078 0.6426 17 1 12.9999 2.5793 -1.2980 18 6 7.2887 4.4446 0.0046 19 6 5.9228 4.2611 0.0035 20 8 5.0919 5.3375 0.0020 21 6 5.7033 6.6290 0.0022 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9329 0.9289 0.8909 30 1 3.9337 0.9285 -0.8891 31 1 5.8178 0.8662 0.0123 32 1 8.2408 1.1657 0.0058 33 1 10.4561 0.8682 -1.6253 34 1 7.7025 5.4423 0.0047 35 1 6.3221 6.7380 0.8929 36 1 6.3242 6.7372 -0.8871 37 1 4.9298 7.3971 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083593126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:42 Heat of formation + Delta-G solvation = -92.637933 kcal Electronic energy + Delta-G solvation = -17944.752895 eV Core-core repulsion = 15072.307141 eV Total energy + Delta-G solvation = -2872.445753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94980 -39.22412 -37.86111 -35.99575 -34.95716 -31.46227 -30.89931 -29.79434 -28.22690 -26.52541 -24.75844 -22.85609 -22.32948 -21.67931 -19.72861 -18.61211 -17.47469 -17.20871 -17.17879 -16.56239 -16.37408 -15.38447 -15.37362 -15.11948 -15.00019 -14.28716 -13.97018 -13.73160 -13.54939 -13.22827 -12.90950 -12.80318 -12.68641 -12.38059 -12.27856 -12.02706 -11.95398 -11.79273 -11.67095 -11.56591 -11.41323 -11.35782 -10.82911 -9.35981 -8.66544 -8.55622 -6.28842 0.86162 1.02978 1.39989 1.50541 1.55387 2.21288 2.62498 2.65067 2.67975 3.63754 3.96544 4.01317 4.20470 4.27045 4.38953 4.42474 4.45403 4.45832 4.63040 4.70172 4.78900 4.86876 4.90514 4.92767 4.97397 5.04723 5.11348 5.24312 5.30119 5.34177 5.43795 5.46725 5.91577 5.95037 6.14034 6.47371 6.53678 6.79090 6.90474 7.16847 8.32303 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.005250 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.665898 B = 5331.731034 C = 6417.340738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.109 4.109 4 C 0.058 3.942 5 O -0.334 6.334 6 C -0.038 4.038 7 C -0.143 4.143 8 C -0.180 4.180 9 C 0.087 3.913 10 C -0.494 4.494 11 H 0.078 0.922 12 C 0.037 3.963 13 N -0.824 5.824 14 Si 0.984 3.016 15 H -0.258 1.258 16 H -0.264 1.264 17 H -0.266 1.266 18 C -0.291 4.291 19 C 0.114 3.886 20 O -0.337 6.337 21 C 0.027 3.973 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.289 0.711 34 H 0.119 0.881 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 -1.212 1.926 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.147 4.147 4 C -0.018 4.018 5 O -0.250 6.250 6 C -0.082 4.082 7 C -0.162 4.162 8 C -0.200 4.200 9 C 0.085 3.915 10 C -0.523 4.523 11 H 0.096 0.904 12 C -0.178 4.178 13 N -0.450 5.450 14 Si 0.805 3.195 15 H -0.181 1.181 16 H -0.188 1.188 17 H -0.191 1.191 18 C -0.311 4.311 19 C 0.069 3.931 20 O -0.252 6.252 21 C -0.067 4.067 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.143 0.857 32 H 0.129 0.871 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.284 -1.259 1.777 9.536 hybrid contribution 1.277 -0.118 -0.053 1.283 sum -8.008 -1.376 1.724 8.306 Atomic orbital electron populations 1.21736 0.94151 1.02474 1.02171 1.21436 0.97153 0.94288 1.02718 1.21535 0.91206 0.98859 1.03079 1.22822 0.96183 0.82275 1.00507 1.85864 1.18760 1.29057 1.91357 1.17975 0.82435 0.91103 1.16692 1.20623 0.94013 0.96455 1.05090 1.20866 0.93349 0.97772 1.08009 1.17725 0.93915 0.91113 0.88776 1.19746 0.91353 1.03649 1.37582 0.90394 1.26764 1.06002 0.93394 0.91680 1.69903 1.40122 1.12294 1.22651 0.85128 0.75649 0.79570 0.79173 1.18136 1.18813 1.19063 1.21046 0.90709 0.99156 1.20169 1.18186 0.88789 0.84909 1.01216 1.85983 1.35270 1.14118 1.89780 1.23139 1.00326 0.82059 1.01223 0.91370 0.92416 0.92528 0.91500 0.91322 0.91272 0.91469 0.92905 0.93277 0.85714 0.87094 0.89995 0.86276 0.92977 0.93286 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 71.98 0.71 -1.70 16 2 C -0.12 -2.38 5.93 30.60 0.18 -2.19 16 3 C -0.11 -2.87 5.58 30.60 0.17 -2.70 16 4 C 0.06 1.96 4.73 71.98 0.34 2.30 16 5 O -0.33 -14.85 9.90 -76.79 -0.76 -15.61 16 6 C -0.04 -1.88 6.73 22.87 0.15 -1.72 16 7 C -0.14 -6.99 8.96 22.07 0.20 -6.79 16 8 C -0.18 -9.71 8.63 22.49 0.19 -9.51 16 9 C 0.09 4.82 5.57 -21.29 -0.12 4.70 16 10 C -0.49 -26.66 9.04 23.40 0.21 -26.45 16 11 H 0.08 4.04 7.91 -2.91 -0.02 4.01 16 12 C 0.04 1.84 5.13 85.23 0.44 2.27 16 13 N -0.82 -42.81 10.96 21.82 0.24 -42.57 16 14 Si 0.98 37.68 29.60 68.60 2.03 39.71 16 15 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 16 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 17 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 18 C -0.29 -14.89 8.78 22.80 0.20 -14.69 16 19 C 0.11 5.68 6.70 22.55 0.15 5.83 16 20 O -0.34 -14.96 10.28 -79.33 -0.82 -15.78 16 21 C 0.03 0.89 9.81 113.37 1.11 2.01 16 22 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.73 7.63 -2.39 -0.02 1.71 16 30 H 0.05 1.65 7.66 -2.39 -0.02 1.63 16 31 H 0.13 5.32 6.26 -2.91 -0.02 5.30 16 32 H 0.11 6.11 6.16 -2.91 -0.02 6.09 16 33 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 34 H 0.12 5.61 6.29 -2.91 -0.02 5.59 16 35 H 0.05 1.65 7.66 -2.39 -0.02 1.63 16 36 H 0.05 1.59 7.66 -2.39 -0.02 1.57 16 37 H 0.12 3.02 8.14 -2.38 -0.02 3.00 16 Total: -1.00 -63.49 308.22 5.68 -57.80 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 1.05 Total: 25.10 kcal Atomic # 6 Polarization: -52.61 SS G_CDS: 3.95 Total: -48.66 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.24 Total: -42.57 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.58 Total: -31.39 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -63.49 5.68 -57.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083593126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.836 kcal (2) G-P(sol) polarization free energy of solvation -63.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds