Wall clock time and date at job start Mon Mar 30 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46741 * 2 1 4 4 O 1.42901 * 109.47013 * 179.97438 * 3 2 1 5 5 C 1.35736 * 116.99938 * 180.02562 * 4 3 2 6 6 C 1.39151 * 119.84334 * 0.02562 * 5 4 3 7 7 C 1.36459 * 120.36606 * 179.97438 * 6 5 4 8 8 C 1.40853 * 120.02731 * 0.02562 * 7 6 5 9 9 C 1.41191 * 120.15838 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00169 * 154.51161 * 9 8 7 11 11 C 1.39872 * 120.00048 * 334.50679 * 9 8 7 12 12 N 1.30893 * 120.00091 * 343.08769 * 11 9 8 13 13 Si 1.86806 * 119.99970 * 163.08299 * 11 9 8 14 14 H 1.48500 * 109.46825 * 90.00577 * 13 11 9 15 15 H 1.48500 * 109.46905 * 210.00127 * 13 11 9 16 16 H 1.48495 * 109.47297 * 330.00253 * 13 11 9 17 17 C 1.40794 * 119.68396 * 0.03820 * 8 7 6 18 18 C 1.37826 * 119.64637 * 359.94187 * 17 8 7 19 19 O 1.35961 * 120.01961 * 180.31475 * 18 17 8 20 20 C 1.42900 * 117.00326 * 359.72260 * 19 18 17 21 21 C 1.52999 * 109.47296 * 180.02562 * 20 19 18 22 22 H 1.08996 * 109.47347 * 299.99880 * 1 2 3 23 23 H 1.08998 * 109.47595 * 60.00161 * 1 2 3 24 24 H 1.09008 * 109.46739 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47347 * 240.00120 * 2 1 3 26 26 H 1.08994 * 109.47130 * 119.99990 * 2 1 3 27 27 H 1.09003 * 109.46816 * 60.00215 * 3 2 1 28 28 H 1.08998 * 109.46944 * 300.00237 * 3 2 1 29 29 H 1.08002 * 119.81688 * 359.97438 * 6 5 4 30 30 H 1.07997 * 119.98714 * 180.02562 * 7 6 5 31 31 H 0.96999 * 120.00243 * 179.97438 * 12 11 9 32 32 H 1.07997 * 120.18038 * 179.97438 * 17 8 7 33 33 H 1.09003 * 109.46542 * 299.99979 * 20 19 18 34 34 H 1.08998 * 109.46723 * 59.99487 * 20 19 18 35 35 H 1.08996 * 109.47188 * 300.00159 * 21 20 19 36 36 H 1.09004 * 109.46829 * 60.00036 * 21 20 19 37 37 H 1.09001 * 109.47085 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0851 2.6521 0.0012 6 6 3.3240 3.8170 0.0018 7 6 3.9323 5.0385 0.0029 8 6 5.3381 5.1258 0.0030 9 6 5.9704 6.3882 0.0048 10 1 6.9671 6.4924 0.4073 11 6 5.3060 7.5039 -0.5150 12 7 4.2637 7.3425 -1.2902 13 14 5.9060 9.2242 -0.1028 14 1 6.9028 9.6566 -1.1151 15 1 4.7562 10.1639 -0.1076 16 1 6.5361 9.2198 1.2419 17 6 6.1098 3.9482 0.0011 18 6 5.4816 2.7214 0.0004 19 8 6.2194 1.5794 0.0050 20 6 7.6409 1.7253 0.0043 21 6 8.2956 0.3424 0.0092 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6765 1.9563 -0.8900 29 1 2.2458 3.7540 0.0013 30 1 3.3356 5.9386 0.0038 31 1 3.8027 8.1162 -1.6504 32 1 7.1882 4.0057 0.0007 33 1 7.9497 2.2699 -0.8880 34 1 7.9499 2.2772 0.8919 35 1 7.9867 -0.2026 0.9012 36 1 7.9865 -0.2090 -0.8788 37 1 9.3799 0.4538 0.0082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083593135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:30 Heat of formation + Delta-G solvation = -91.714805 kcal Electronic energy + Delta-G solvation = -18112.405975 eV Core-core repulsion = 15240.000252 eV Total energy + Delta-G solvation = -2872.405724 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97857 -39.29654 -37.89717 -35.30717 -34.46646 -32.57160 -31.33287 -29.96600 -27.78112 -26.36530 -24.61010 -22.89869 -22.64288 -21.50861 -19.78745 -18.62722 -17.59047 -17.18782 -17.14147 -16.69108 -16.49541 -15.39025 -15.12947 -14.86580 -14.82577 -14.13262 -13.87897 -13.69989 -13.37053 -13.29576 -13.08523 -12.82374 -12.75418 -12.66860 -12.38942 -12.18587 -12.02390 -11.91451 -11.64008 -11.46853 -11.40512 -11.36265 -10.82953 -9.35936 -8.65637 -8.54928 -6.29524 0.86057 1.02935 1.39548 1.49436 1.55541 2.21129 2.53149 2.64311 2.68567 3.63225 4.00924 4.03971 4.10669 4.19207 4.33511 4.37288 4.42682 4.49297 4.60413 4.66755 4.78356 4.86608 4.94475 4.98140 4.98477 5.09766 5.11505 5.21738 5.26087 5.28259 5.37246 5.46545 5.91091 5.95079 6.13987 6.48614 6.53756 6.78857 6.90364 7.16845 8.32869 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016998 B = 0.006551 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.898080 B = 4273.357477 C = 5815.186370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.056 3.944 4 O -0.334 6.334 5 C -0.037 4.037 6 C -0.143 4.143 7 C -0.179 4.179 8 C 0.088 3.912 9 C -0.495 4.495 10 H 0.078 0.922 11 C 0.036 3.964 12 N -0.826 5.826 13 Si 0.984 3.016 14 H -0.262 1.262 15 H -0.266 1.266 16 H -0.259 1.259 17 C -0.290 4.290 18 C 0.116 3.884 19 O -0.332 6.332 20 C 0.047 3.953 21 C -0.138 4.138 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.125 0.875 30 H 0.111 0.889 31 H 0.289 0.711 32 H 0.117 0.883 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 -7.826 1.904 8.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.019 4.019 4 O -0.251 6.251 5 C -0.081 4.081 6 C -0.162 4.162 7 C -0.199 4.199 8 C 0.085 3.915 9 C -0.524 4.524 10 H 0.096 0.904 11 C -0.178 4.178 12 N -0.452 5.452 13 Si 0.805 3.195 14 H -0.187 1.187 15 H -0.190 1.190 16 H -0.182 1.182 17 C -0.311 4.311 18 C 0.071 3.929 19 O -0.247 6.247 20 C -0.028 4.028 21 C -0.195 4.195 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.143 0.857 30 H 0.129 0.871 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.516 -8.098 1.756 8.424 hybrid contribution 0.170 1.298 -0.070 1.311 sum -1.345 -6.800 1.686 7.134 Atomic orbital electron populations 1.21670 0.92485 1.03308 1.02496 1.21461 0.97334 0.93424 1.03098 1.22872 0.78922 0.99630 1.00497 1.85867 1.21157 1.26687 1.91344 1.17973 0.88818 0.84696 1.16637 1.20623 0.98749 0.91723 1.05118 1.20861 0.95047 0.96033 1.07924 1.17719 0.92193 0.92804 0.88740 1.19708 1.02704 0.92905 1.37093 0.90409 1.26765 0.94006 1.05386 0.91693 1.69898 1.18066 1.34558 1.22676 0.85176 0.78928 0.75538 0.79898 1.18661 1.18987 1.18234 1.21036 0.98841 0.90968 1.20220 1.18153 0.88215 0.85399 1.01137 1.85991 1.19641 1.29422 1.89685 1.22902 0.78301 1.00628 1.00984 1.21750 1.01040 0.93626 1.03107 0.92048 0.92213 0.90235 0.91433 0.91229 0.92925 0.93296 0.85701 0.87100 0.90011 0.86512 0.92951 0.92609 0.91707 0.91888 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.91 71.98 0.71 -2.02 16 2 C -0.12 -3.01 6.30 30.60 0.19 -2.82 16 3 C 0.06 1.92 4.73 71.98 0.34 2.26 16 4 O -0.33 -14.93 9.90 -76.69 -0.76 -15.69 16 5 C -0.04 -1.84 6.73 22.87 0.15 -1.69 16 6 C -0.14 -7.04 8.96 22.07 0.20 -6.84 16 7 C -0.18 -9.69 8.63 22.49 0.19 -9.49 16 8 C 0.09 4.89 5.57 -21.29 -0.12 4.77 16 9 C -0.49 -26.84 9.04 23.39 0.21 -26.62 16 10 H 0.08 4.04 7.90 -2.91 -0.02 4.01 16 11 C 0.04 1.83 5.15 85.23 0.44 2.27 16 12 N -0.83 -43.17 10.96 21.82 0.24 -42.93 16 13 Si 0.98 37.83 29.59 68.60 2.03 39.86 16 14 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 15 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 16 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 17 C -0.29 -15.03 8.78 22.80 0.20 -14.83 16 18 C 0.12 5.83 6.70 22.56 0.15 5.98 16 19 O -0.33 -14.94 9.92 -79.21 -0.79 -15.73 16 20 C 0.05 1.63 5.46 71.98 0.39 2.02 16 21 C -0.14 -3.48 10.28 71.98 0.74 -2.74 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.05 1.73 7.65 -2.39 -0.02 1.71 16 28 H 0.05 1.65 7.65 -2.39 -0.02 1.64 16 29 H 0.13 5.35 6.26 -2.91 -0.02 5.34 16 30 H 0.11 6.14 6.18 -2.91 -0.02 6.12 16 31 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 32 H 0.12 5.59 6.29 -2.91 -0.02 5.57 16 33 H 0.05 1.82 7.67 -2.39 -0.02 1.80 16 34 H 0.06 1.89 7.65 -2.39 -0.02 1.87 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -64.02 308.59 5.58 -58.44 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 1.05 Total: 25.82 kcal Atomic # 6 Polarization: -53.58 SS G_CDS: 3.81 Total: -49.77 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.24 Total: -42.93 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.55 Total: -31.42 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -64.02 5.58 -58.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083593135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.277 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds