Wall clock time and date at job start Mon Mar 30 2020 06:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47071 * 2 1 4 4 C 1.53001 * 109.47042 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46917 * 179.97438 * 4 3 2 6 6 C 1.35741 * 117.00236 * 180.02562 * 5 4 3 7 7 C 1.41193 * 120.28465 * 89.99639 * 6 5 4 8 8 C 1.41177 * 120.26835 * 359.97438 * 7 6 5 9 9 H 1.07996 * 119.99573 * 24.96371 * 8 7 6 10 10 C 1.39916 * 119.99996 * 204.69249 * 8 7 6 11 11 N 1.30866 * 120.00478 * 17.99226 * 10 8 7 12 12 Si 1.86801 * 120.00000 * 197.99694 * 10 8 7 13 13 H 1.48500 * 109.47241 * 89.99551 * 12 10 8 14 14 H 1.48501 * 109.47325 * 209.99791 * 12 10 8 15 15 H 1.48502 * 109.46827 * 329.99808 * 12 10 8 16 16 C 1.40772 * 119.46636 * 180.25419 * 7 6 5 17 17 C 1.36493 * 120.02200 * 359.46848 * 16 7 6 18 18 C 1.38769 * 120.58341 * 0.51364 * 17 16 7 19 19 C 1.38709 * 120.53254 * 359.76511 * 18 17 16 20 20 O 1.36012 * 120.01692 * 179.97438 * 19 18 17 21 21 C 1.42897 * 117.00220 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.46718 * 60.00762 * 1 2 3 23 23 H 1.09000 * 109.46684 * 179.97438 * 1 2 3 24 24 H 1.08989 * 109.47484 * 300.00496 * 1 2 3 25 25 H 1.08995 * 109.47885 * 239.99664 * 2 1 3 26 26 H 1.09006 * 109.47296 * 119.99083 * 2 1 3 27 27 H 1.09001 * 109.46969 * 59.99599 * 3 2 1 28 28 H 1.08997 * 109.46517 * 299.99742 * 3 2 1 29 29 H 1.09001 * 109.47271 * 60.00145 * 4 3 2 30 30 H 1.08998 * 109.47028 * 299.99410 * 4 3 2 31 31 H 0.96998 * 120.00737 * 180.02562 * 11 10 8 32 32 H 1.08000 * 119.98824 * 179.72550 * 16 7 6 33 33 H 1.08001 * 119.70629 * 180.23848 * 17 16 7 34 34 H 1.07996 * 119.73093 * 179.73723 * 18 17 16 35 35 H 1.08997 * 109.47625 * 59.99703 * 21 20 19 36 36 H 1.09007 * 109.47205 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.46844 * 299.99864 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7899 0.0000 6 6 5.3920 2.9678 0.0000 7 6 6.0979 3.0606 -1.2193 8 6 5.4099 2.9684 -2.4487 9 1 4.3629 3.2277 -2.5022 10 6 6.0859 2.5466 -3.5988 11 7 7.2249 1.9110 -3.4923 12 14 5.3628 2.8909 -5.2864 13 1 5.8563 4.2022 -5.7783 14 1 5.7760 1.8210 -6.2297 15 1 3.8811 2.9231 -5.1927 16 6 7.4940 3.2397 -1.1993 17 6 8.1535 3.3333 -0.0079 18 6 7.4612 3.2429 1.1913 19 6 6.0862 3.0606 1.1992 20 8 5.4182 2.9729 2.3807 21 6 6.1960 3.0762 3.5750 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8898 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9286 -0.8891 30 1 3.9329 0.9290 0.8909 31 1 7.6938 1.6188 -4.2896 32 1 8.0429 3.3072 -2.1270 33 1 9.2242 3.4746 0.0014 34 1 7.9974 3.3145 2.1260 35 1 6.7030 4.0408 3.5961 36 1 5.5423 2.9897 4.4430 37 1 6.9361 2.2762 3.5968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083593168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:45 Heat of formation + Delta-G solvation = -78.795024 kcal Electronic energy + Delta-G solvation = -18478.085031 eV Core-core repulsion = 15606.239551 eV Total energy + Delta-G solvation = -2871.845480 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.03247 -37.13786 -35.94199 -34.41000 -33.47150 -29.69391 -29.05166 -27.97972 -26.42758 -25.07028 -22.93878 -20.83559 -20.65749 -20.53243 -17.86083 -16.36660 -15.78090 -15.68557 -15.12707 -14.94453 -14.70661 -14.08394 -13.71240 -13.45766 -13.19774 -12.80355 -12.59972 -12.04413 -11.89917 -11.51238 -11.43178 -11.17677 -11.10443 -10.84831 -10.71465 -10.55278 -10.49877 -10.31500 -10.08989 -9.94163 -9.53927 -9.19115 -8.50776 -7.44557 -6.93912 -6.76775 -4.43209 2.64061 2.90645 3.04090 3.08715 3.17967 3.86999 4.24781 4.49237 4.78399 5.23524 5.38261 5.43006 5.64054 5.66244 5.75088 5.76942 5.88453 6.01035 6.04433 6.15116 6.18644 6.22401 6.33094 6.42691 6.53047 6.73379 6.76815 6.83771 6.95099 7.11500 7.21647 7.62801 7.74422 7.91802 8.03185 8.40139 8.44328 8.71947 8.79771 9.23209 10.06564 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.010075 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.570531 B = 2778.369413 C = 4817.708728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.114 4.114 4 C 0.065 3.935 5 O -0.313 6.313 6 C -0.061 4.061 7 C 0.125 3.875 8 C -0.437 4.437 9 H 0.087 0.913 10 C 0.075 3.925 11 N -0.784 5.784 12 Si 0.911 3.089 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.259 1.259 16 C -0.180 4.180 17 C -0.077 4.077 18 C -0.320 4.320 19 C 0.133 3.867 20 O -0.322 6.322 21 C 0.035 3.965 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.283 0.717 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 -2.049 4.414 6.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.152 4.152 4 C -0.011 4.011 5 O -0.229 6.229 6 C -0.106 4.106 7 C 0.122 3.878 8 C -0.466 4.466 9 H 0.105 0.895 10 C -0.144 4.144 11 N -0.409 5.409 12 Si 0.735 3.265 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.183 1.183 16 C -0.200 4.200 17 C -0.096 4.096 18 C -0.340 4.340 19 C 0.088 3.912 20 O -0.236 6.236 21 C -0.061 4.061 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.658 -2.073 4.295 6.666 hybrid contribution 0.378 -0.157 -0.579 0.709 sum -4.280 -2.230 3.715 6.091 Atomic orbital electron populations 1.21745 0.96000 1.01103 1.01767 1.21437 0.95527 0.96951 1.02024 1.21482 0.94954 0.96180 1.02544 1.22504 0.93086 0.86033 0.99435 1.85982 1.18835 1.24096 1.94027 1.17861 0.83444 1.20115 0.89191 1.17637 0.91704 0.87418 0.91077 1.19559 0.98194 1.37366 0.91464 0.89461 1.26011 0.94337 0.92301 1.01799 1.69857 1.13890 1.25072 1.32057 0.86255 0.80742 0.79084 0.80430 1.19060 1.20238 1.18310 1.20945 0.94675 1.07479 0.96873 1.20219 0.97479 0.99242 0.92651 1.20288 0.92286 1.23712 0.97684 1.19210 0.90697 0.97497 0.83763 1.86073 1.36256 1.88707 1.12526 1.22786 0.96431 1.00534 0.86386 0.92747 0.93085 0.92868 0.91902 0.92194 0.91864 0.91507 0.93502 0.94915 0.90636 0.86029 0.89047 0.88483 0.93595 0.89870 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.11 -1.95 5.58 -26.73 -0.15 -2.10 16 4 C 0.06 1.38 6.06 37.16 0.23 1.61 16 5 O -0.31 -7.87 9.14 -33.47 -0.31 -8.17 16 6 C -0.06 -1.60 5.77 -38.23 -0.22 -1.82 16 7 C 0.12 3.40 5.58 -106.70 -0.60 2.81 16 8 C -0.44 -11.65 8.72 -37.84 -0.33 -11.98 16 9 H 0.09 2.32 7.66 -52.49 -0.40 1.92 16 10 C 0.07 1.84 5.13 -17.33 -0.09 1.76 16 11 N -0.78 -19.78 10.96 55.55 0.61 -19.17 16 12 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 13 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 14 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 15 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 16 C -0.18 -4.70 8.64 -39.25 -0.34 -5.04 16 17 C -0.08 -1.83 9.96 -40.02 -0.40 -2.23 16 18 C -0.32 -7.38 9.05 -39.21 -0.35 -7.74 16 19 C 0.13 3.26 6.69 -39.17 -0.26 3.00 16 20 O -0.32 -7.11 10.28 -34.32 -0.35 -7.47 16 21 C 0.03 0.56 9.81 101.05 0.99 1.55 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.59 8.14 -51.94 -0.42 0.17 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 32 H 0.12 3.20 6.15 -52.49 -0.32 2.88 16 33 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.10 1.96 6.27 -52.49 -0.33 1.63 16 35 H 0.05 0.71 7.66 -51.93 -0.40 0.31 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -28.71 311.31 -7.34 -36.04 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.63 Total: 4.02 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -1.31 Total: -23.41 kcal Atomic # 7 Polarization: -19.78 SS G_CDS: 0.61 Total: -19.17 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.66 Total: -15.64 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.71 -7.34 -36.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083593168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.752 kcal (2) G-P(sol) polarization free energy of solvation -28.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds