Wall clock time and date at job start Mon Mar 30 2020 06:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47071 * 2 1 4 4 C 1.53001 * 109.47042 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46917 * 179.97438 * 4 3 2 6 6 C 1.35741 * 117.00236 * 180.02562 * 5 4 3 7 7 C 1.41193 * 120.28465 * 89.99639 * 6 5 4 8 8 C 1.41177 * 120.26835 * 359.97438 * 7 6 5 9 9 H 1.07996 * 119.99573 * 24.96371 * 8 7 6 10 10 C 1.39916 * 119.99996 * 204.69249 * 8 7 6 11 11 N 1.30866 * 120.00478 * 17.99226 * 10 8 7 12 12 Si 1.86801 * 120.00000 * 197.99694 * 10 8 7 13 13 H 1.48500 * 109.47241 * 89.99551 * 12 10 8 14 14 H 1.48501 * 109.47325 * 209.99791 * 12 10 8 15 15 H 1.48502 * 109.46827 * 329.99808 * 12 10 8 16 16 C 1.40772 * 119.46636 * 180.25419 * 7 6 5 17 17 C 1.36493 * 120.02200 * 359.46848 * 16 7 6 18 18 C 1.38769 * 120.58341 * 0.51364 * 17 16 7 19 19 C 1.38709 * 120.53254 * 359.76511 * 18 17 16 20 20 O 1.36012 * 120.01692 * 179.97438 * 19 18 17 21 21 C 1.42897 * 117.00220 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.46718 * 60.00762 * 1 2 3 23 23 H 1.09000 * 109.46684 * 179.97438 * 1 2 3 24 24 H 1.08989 * 109.47484 * 300.00496 * 1 2 3 25 25 H 1.08995 * 109.47885 * 239.99664 * 2 1 3 26 26 H 1.09006 * 109.47296 * 119.99083 * 2 1 3 27 27 H 1.09001 * 109.46969 * 59.99599 * 3 2 1 28 28 H 1.08997 * 109.46517 * 299.99742 * 3 2 1 29 29 H 1.09001 * 109.47271 * 60.00145 * 4 3 2 30 30 H 1.08998 * 109.47028 * 299.99410 * 4 3 2 31 31 H 0.96998 * 120.00737 * 180.02562 * 11 10 8 32 32 H 1.08000 * 119.98824 * 179.72550 * 16 7 6 33 33 H 1.08001 * 119.70629 * 180.23848 * 17 16 7 34 34 H 1.07996 * 119.73093 * 179.73723 * 18 17 16 35 35 H 1.08997 * 109.47625 * 59.99703 * 21 20 19 36 36 H 1.09007 * 109.47205 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.46844 * 299.99864 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7899 0.0000 6 6 5.3920 2.9678 0.0000 7 6 6.0979 3.0606 -1.2193 8 6 5.4099 2.9684 -2.4487 9 1 4.3629 3.2277 -2.5022 10 6 6.0859 2.5466 -3.5988 11 7 7.2249 1.9110 -3.4923 12 14 5.3628 2.8909 -5.2864 13 1 5.8563 4.2022 -5.7783 14 1 5.7760 1.8210 -6.2297 15 1 3.8811 2.9231 -5.1927 16 6 7.4940 3.2397 -1.1993 17 6 8.1535 3.3333 -0.0079 18 6 7.4612 3.2429 1.1913 19 6 6.0862 3.0606 1.1992 20 8 5.4182 2.9729 2.3807 21 6 6.1960 3.0762 3.5750 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8898 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9286 -0.8891 30 1 3.9329 0.9290 0.8909 31 1 7.6938 1.6188 -4.2896 32 1 8.0429 3.3072 -2.1270 33 1 9.2242 3.4746 0.0014 34 1 7.9974 3.3145 2.1260 35 1 6.7030 4.0408 3.5961 36 1 5.5423 2.9897 4.4430 37 1 6.9361 2.2762 3.5968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083593168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:45 Heat of formation + Delta-G solvation = -93.864971 kcal Electronic energy + Delta-G solvation = -18478.738513 eV Core-core repulsion = 15606.239551 eV Total energy + Delta-G solvation = -2872.498962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83446 -38.87957 -37.73005 -35.78769 -35.34259 -31.49308 -30.72143 -29.51161 -28.02791 -26.89671 -24.36775 -22.69012 -22.40639 -21.96154 -19.68900 -18.23510 -17.59810 -17.42610 -16.70890 -16.53039 -16.30313 -15.71064 -15.30008 -15.02895 -14.80262 -14.22218 -14.18708 -13.67653 -13.39230 -13.08540 -13.02817 -12.69497 -12.62416 -12.43226 -12.15259 -12.10787 -11.94836 -11.87723 -11.68276 -11.52765 -11.35283 -11.03830 -10.38542 -9.38051 -8.80312 -8.63902 -6.41424 0.78426 1.02171 1.36340 1.49759 1.50175 2.17525 2.60504 2.68512 3.08345 3.69495 4.00592 4.17721 4.25213 4.31418 4.42151 4.45144 4.50735 4.59837 4.60967 4.74665 4.75991 4.93514 4.97228 4.99407 5.03762 5.05426 5.23100 5.24436 5.31958 5.36481 5.45681 5.72215 5.88282 6.00131 6.08627 6.46310 6.63761 6.77161 6.86839 7.33202 8.23289 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.010075 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.570531 B = 2778.369413 C = 4817.708728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.105 4.105 4 C 0.067 3.933 5 O -0.330 6.330 6 C -0.089 4.089 7 C 0.096 3.904 8 C -0.470 4.470 9 H 0.072 0.928 10 C 0.039 3.961 11 N -0.810 5.810 12 Si 0.981 3.019 13 H -0.258 1.258 14 H -0.262 1.262 15 H -0.261 1.261 16 C -0.205 4.205 17 C -0.076 4.076 18 C -0.315 4.315 19 C 0.126 3.874 20 O -0.339 6.339 21 C 0.024 3.976 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.030 0.970 31 H 0.293 0.707 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 -2.350 5.113 7.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.143 4.143 4 C -0.008 4.008 5 O -0.247 6.247 6 C -0.135 4.135 7 C 0.092 3.908 8 C -0.498 4.498 9 H 0.090 0.910 10 C -0.178 4.178 11 N -0.435 5.435 12 Si 0.801 3.199 13 H -0.183 1.183 14 H -0.186 1.186 15 H -0.185 1.185 16 C -0.225 4.225 17 C -0.095 4.095 18 C -0.335 4.335 19 C 0.081 3.919 20 O -0.254 6.254 21 C -0.071 4.071 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.136 0.864 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.957 -2.379 5.025 7.449 hybrid contribution 0.515 -0.078 -0.610 0.803 sum -4.442 -2.457 4.414 6.727 Atomic orbital electron populations 1.21714 0.93696 1.02530 1.02211 1.21432 0.97446 0.94482 1.02197 1.21482 0.91656 0.98597 1.02531 1.22622 0.95756 0.84322 0.98075 1.85916 1.18641 1.26075 1.94080 1.18194 0.84027 1.21151 0.90094 1.18005 0.92664 0.88200 0.91882 1.19623 0.97847 1.39494 0.92811 0.90964 1.26791 0.94616 0.91348 1.05035 1.69876 1.14838 1.25136 1.33647 0.85211 0.79633 0.79452 0.75555 1.18262 1.18605 1.18507 1.20947 0.94450 1.09521 0.97536 1.20567 0.99074 0.97772 0.92051 1.20658 0.91917 1.22025 0.98876 1.19320 0.91273 0.96890 0.84384 1.86038 1.37726 1.88412 1.13192 1.23188 0.97410 1.01513 0.84953 0.92657 0.91176 0.92121 0.92299 0.91532 0.91243 0.92055 0.95824 0.95178 0.89615 0.87106 0.85957 0.85053 0.92485 0.86398 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.91 71.98 0.71 -2.35 16 2 C -0.12 -3.20 5.93 30.60 0.18 -3.02 16 3 C -0.11 -3.62 5.58 30.60 0.17 -3.45 16 4 C 0.07 2.98 6.06 71.98 0.44 3.42 16 5 O -0.33 -17.25 9.14 -76.74 -0.70 -17.95 16 6 C -0.09 -4.87 5.77 23.15 0.13 -4.74 16 7 C 0.10 5.42 5.58 -21.21 -0.12 5.30 16 8 C -0.47 -26.17 8.72 23.40 0.20 -25.96 16 9 H 0.07 4.08 7.66 -2.91 -0.02 4.06 16 10 C 0.04 1.97 5.13 85.24 0.44 2.40 16 11 N -0.81 -41.71 10.96 21.82 0.24 -41.47 16 12 Si 0.98 38.34 29.59 68.60 2.03 40.37 16 13 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 14 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 15 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 16 C -0.21 -10.95 8.64 22.48 0.19 -10.75 16 17 C -0.08 -3.56 9.96 21.99 0.22 -3.34 16 18 C -0.32 -14.12 9.05 22.51 0.20 -13.91 16 19 C 0.13 6.20 6.69 22.53 0.15 6.36 16 20 O -0.34 -14.66 10.28 -79.78 -0.82 -15.48 16 21 C 0.02 0.71 9.81 113.37 1.11 1.82 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.29 13.44 8.30 -92.71 -0.77 12.68 16 32 H 0.11 6.03 6.15 -2.91 -0.02 6.02 16 33 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 34 H 0.13 4.88 6.27 -2.91 -0.02 4.86 16 35 H 0.06 1.57 7.66 -2.39 -0.02 1.56 16 36 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 37 H 0.05 1.53 7.66 -2.39 -0.02 1.51 16 Total: -1.00 -64.05 311.31 5.83 -58.23 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 1.04 Total: 24.53 kcal Atomic # 6 Polarization: -52.26 SS G_CDS: 4.04 Total: -48.22 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.24 Total: -41.47 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.52 Total: -33.43 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -64.05 5.83 -58.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083593168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.638 kcal (2) G-P(sol) polarization free energy of solvation -64.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds