Wall clock time and date at job start Mon Mar 30 2020 06:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 H 1.08996 * 109.47425 * 305.67342 * 3 2 1 5 5 C 1.50707 * 109.46736 * 65.67307 * 3 2 1 6 6 H 1.08002 * 120.00049 * 54.72054 * 5 3 2 7 7 C 1.37877 * 119.99601 * 234.72413 * 5 3 2 8 8 N 1.31517 * 119.99603 * 184.51712 * 7 5 3 9 9 Si 1.86799 * 120.00276 * 4.50711 * 7 5 3 10 10 H 1.48504 * 109.47028 * 84.63556 * 9 7 5 11 11 H 1.48497 * 109.47428 * 204.63530 * 9 7 5 12 12 H 1.48499 * 109.47095 * 324.63552 * 9 7 5 13 13 C 1.50700 * 109.47386 * 185.66940 * 3 2 1 14 14 C 1.38173 * 119.94456 * 120.00038 * 13 3 2 15 15 C 1.38781 * 120.05246 * 180.02562 * 14 13 3 16 16 O 1.35897 * 120.02099 * 179.97438 * 15 14 13 17 17 C 1.42903 * 116.99199 * 180.02562 * 16 15 14 18 18 C 1.38634 * 119.94460 * 0.02562 * 15 14 13 19 19 C 1.38631 * 119.89153 * 0.02562 * 18 15 14 20 20 O 1.35896 * 120.02587 * 179.97438 * 19 18 15 21 21 C 1.42902 * 116.99913 * 359.97438 * 20 19 18 22 22 C 1.38176 * 119.94552 * 300.02569 * 13 3 2 23 23 H 1.09001 * 109.47529 * 304.87164 * 1 2 3 24 24 H 1.08997 * 109.47156 * 64.87791 * 1 2 3 25 25 H 1.09000 * 109.46952 * 184.87407 * 1 2 3 26 26 H 1.09004 * 109.47219 * 239.99867 * 2 1 3 27 27 H 1.09002 * 109.47068 * 120.00329 * 2 1 3 28 28 H 0.97001 * 119.99558 * 180.02562 * 8 7 5 29 29 H 1.07997 * 119.97244 * 0.02562 * 14 13 3 30 30 H 1.09000 * 109.47336 * 60.00767 * 17 16 15 31 31 H 1.09005 * 109.46549 * 180.02562 * 17 16 15 32 32 H 1.08993 * 109.47461 * 300.00460 * 17 16 15 33 33 H 1.08001 * 120.04950 * 179.72517 * 18 15 14 34 34 H 1.08999 * 109.47150 * 180.02562 * 21 20 19 35 35 H 1.08995 * 109.47460 * 300.00339 * 21 20 19 36 36 H 1.09002 * 109.46936 * 60.00823 * 21 20 19 37 37 H 1.08004 * 119.97574 * 359.97438 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9849 -0.8348 5 6 1.6555 2.1112 1.2948 6 1 1.9340 1.6634 2.2373 7 6 0.9482 3.2945 1.2759 8 7 0.6897 3.9240 2.4014 9 14 0.3573 4.0038 -0.3480 10 1 -0.9383 3.3798 -0.7185 11 1 0.1786 5.4716 -0.2113 12 1 1.3618 3.7238 -1.4052 13 6 3.5404 1.4449 -0.1404 14 6 4.1314 2.0785 -1.2167 15 6 5.5130 2.0816 -1.3484 16 8 6.0936 2.7045 -2.4075 17 6 7.5203 2.6673 -2.4795 18 6 6.3001 1.4479 -0.3993 19 6 5.7046 0.8120 0.6791 20 8 6.4735 0.1896 1.6108 21 6 7.8886 0.2294 1.4158 22 6 4.3228 0.8131 0.8072 23 1 -0.3634 0.5875 0.8431 24 1 -0.3633 0.4363 -0.9304 25 1 -0.3633 -1.0240 0.0873 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.1917 4.7563 2.3882 29 1 3.5178 2.5716 -1.9560 30 1 7.8547 1.6311 -2.5298 31 1 7.8531 3.2005 -3.3701 32 1 7.9413 3.1424 -1.5934 33 1 7.3751 1.4455 -0.5025 34 1 8.3825 -0.3037 2.2282 35 1 8.1381 -0.2442 0.4664 36 1 8.2247 1.2663 1.4041 37 1 3.8586 0.3185 1.6477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084400296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:56 Heat of formation + Delta-G solvation = -82.827698 kcal Electronic energy + Delta-G solvation = -18579.991726 eV Core-core repulsion = 15707.971377 eV Total energy + Delta-G solvation = -2872.020350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.47010 -39.71750 -38.57076 -35.91768 -33.91988 -31.43193 -31.15969 -29.12644 -28.28833 -27.40420 -25.40196 -23.47805 -22.61754 -21.03045 -19.26312 -19.05334 -17.81645 -16.97800 -16.84925 -16.64911 -16.34693 -16.22954 -15.60554 -15.18222 -14.97672 -14.71765 -14.17782 -13.76551 -13.50605 -13.31979 -13.10878 -12.94331 -12.66269 -12.41850 -12.31094 -12.15578 -12.09213 -11.89731 -11.70323 -11.46640 -11.06775 -10.89833 -10.65528 -9.37877 -8.90336 -8.25842 -6.27216 0.49457 0.57197 1.35408 1.37081 1.45400 2.33029 2.36343 2.42113 2.84402 3.15009 3.90590 4.03446 4.16673 4.26813 4.36903 4.37811 4.38069 4.40039 4.46961 4.56574 4.67054 4.70149 4.71550 4.73742 4.95730 5.05413 5.15387 5.27749 5.30015 5.41228 5.48805 5.57570 5.74523 5.82267 5.87828 6.26955 6.38713 6.61454 6.77676 7.36046 8.90738 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.007508 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.698693 B = 3728.571501 C = 4207.223697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C 0.036 3.964 4 H 0.048 0.952 5 C -0.487 4.487 6 H 0.036 0.964 7 C 0.018 3.982 8 N -0.947 5.947 9 Si 0.926 3.074 10 H -0.257 1.257 11 H -0.292 1.292 12 H -0.247 1.247 13 C 0.023 3.977 14 C -0.221 4.221 15 C 0.161 3.839 16 O -0.333 6.333 17 C 0.016 3.984 18 C -0.306 4.306 19 C 0.158 3.842 20 O -0.335 6.335 21 C 0.017 3.983 22 C -0.195 4.195 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.162 0.838 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.334 -6.205 -9.540 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C 0.017 3.983 4 H 0.067 0.933 5 C -0.524 4.524 6 H 0.054 0.946 7 C -0.179 4.179 8 N -0.587 5.587 9 Si 0.750 3.250 10 H -0.181 1.181 11 H -0.219 1.219 12 H -0.171 1.171 13 C 0.023 3.977 14 C -0.240 4.240 15 C 0.116 3.884 16 O -0.246 6.246 17 C -0.078 4.078 18 C -0.325 4.325 19 C 0.113 3.887 20 O -0.248 6.248 21 C -0.077 4.077 22 C -0.214 4.214 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.141 0.859 32 H 0.080 0.920 33 H 0.180 0.820 34 H 0.140 0.860 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.123 -6.056 -9.448 18.039 hybrid contribution -0.145 0.779 -0.020 0.793 sum 13.978 -5.277 -9.468 17.689 Atomic orbital electron populations 1.21654 0.95728 1.01178 1.01171 1.21482 0.96230 0.95837 1.00292 1.18517 0.87724 0.95714 0.96357 0.93347 1.20972 1.33270 1.06435 0.91756 0.94571 1.25845 0.96088 0.96756 0.99259 1.70046 1.42157 1.17913 1.28633 0.86059 0.80262 0.77233 0.81401 1.18146 1.21898 1.17073 1.20085 0.97533 0.89907 0.90211 1.20331 0.92372 1.09254 1.02017 1.18698 0.91740 0.91282 0.86696 1.86057 1.24542 1.71545 1.42494 1.23380 0.76538 1.03352 1.04488 1.21223 1.01194 1.11322 0.98757 1.18770 0.90424 0.91444 0.88082 1.86071 1.20694 1.71497 1.46579 1.23373 0.76734 1.03074 1.04536 1.20104 0.90667 1.08403 1.02216 0.93999 0.93338 0.91572 0.92297 0.93328 0.92677 0.86346 0.91363 0.85884 0.92033 0.82047 0.86026 0.91279 0.92020 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 9.81 71.98 0.71 -4.62 16 2 C -0.10 -4.07 5.11 30.59 0.16 -3.92 16 3 C 0.04 1.68 1.92 -12.28 -0.02 1.66 16 4 H 0.05 2.27 4.25 -2.39 -0.01 2.26 16 5 C -0.49 -27.52 7.42 25.60 0.19 -27.33 16 6 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 7 C 0.02 1.02 5.47 84.65 0.46 1.49 16 8 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 9 Si 0.93 44.47 27.23 68.60 1.87 46.34 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 12 H -0.25 -11.15 6.41 99.48 0.64 -10.51 16 13 C 0.02 1.04 4.77 -19.89 -0.09 0.95 16 14 C -0.22 -9.14 9.61 22.38 0.22 -8.92 16 15 C 0.16 5.73 6.68 22.49 0.15 5.88 16 16 O -0.33 -10.10 10.50 -92.39 -0.97 -11.07 16 17 C 0.02 0.30 9.81 113.37 1.11 1.41 16 18 C -0.31 -9.70 8.02 22.46 0.18 -9.52 16 19 C 0.16 5.81 6.68 22.49 0.15 5.96 16 20 O -0.33 -10.78 10.50 -92.38 -0.97 -11.75 16 21 C 0.02 0.33 9.81 113.37 1.11 1.44 16 22 C -0.19 -8.41 8.80 22.38 0.20 -8.22 16 23 H 0.04 1.83 7.26 -2.39 -0.02 1.81 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 27 H 0.05 2.00 7.59 -2.39 -0.02 1.98 16 28 H 0.26 15.65 8.31 -92.71 -0.77 14.87 16 29 H 0.12 4.86 7.94 -2.91 -0.02 4.83 16 30 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 31 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 33 H 0.16 3.73 4.54 -2.91 -0.01 3.72 16 34 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 36 H 0.06 1.09 7.66 -2.39 -0.02 1.07 16 37 H 0.11 5.06 7.64 -2.91 -0.02 5.03 16 Total: -1.00 -69.94 303.65 5.73 -64.21 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.98 Total: 15.25 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 4.51 Total: -43.73 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.30 Total: -59.25 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -1.94 Total: -22.82 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.87 Total: 46.34 kcal Total: -69.94 5.73 -64.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.618 kcal (2) G-P(sol) polarization free energy of solvation -69.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds