Wall clock time and date at job start Mon Mar 30 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47606 * 2 1 4 4 H 1.08999 * 109.47291 * 305.63104 * 3 2 1 5 5 C 1.50709 * 109.46888 * 65.63020 * 3 2 1 6 6 H 1.07996 * 119.99900 * 28.16965 * 5 3 2 7 7 C 1.37879 * 119.99788 * 208.16758 * 5 3 2 8 8 N 1.31516 * 119.99976 * 6.29302 * 7 5 3 9 9 Si 1.86792 * 120.00074 * 186.29828 * 7 5 3 10 10 H 1.48508 * 109.47181 * 59.99598 * 9 7 5 11 11 H 1.48493 * 109.47435 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47334 * 300.00141 * 9 7 5 13 13 C 1.50700 * 109.47242 * 185.62688 * 3 2 1 14 14 C 1.38200 * 119.97451 * 300.23466 * 13 3 2 15 15 C 1.38158 * 120.10703 * 180.27417 * 14 13 3 16 16 C 1.38790 * 120.05408 * 359.77072 * 15 14 13 17 17 O 1.35893 * 120.02854 * 179.97438 * 16 15 14 18 18 C 1.42899 * 117.00106 * 359.97438 * 17 16 15 19 19 C 1.38619 * 119.94986 * 359.97438 * 16 15 14 20 20 C 1.38662 * 119.88593 * 359.97438 * 19 16 15 21 21 O 1.35896 * 120.02477 * 180.02562 * 20 19 16 22 22 C 1.42897 * 116.99967 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.46587 * 54.18577 * 1 2 3 24 24 H 1.08995 * 109.47514 * 174.19212 * 1 2 3 25 25 H 1.09001 * 109.46785 * 294.18959 * 1 2 3 26 26 H 1.09005 * 109.46940 * 239.99513 * 2 1 3 27 27 H 1.09009 * 109.46844 * 120.00254 * 2 1 3 28 28 H 0.96998 * 119.99700 * 180.02562 * 8 7 5 29 29 H 1.07994 * 119.94763 * 0.02591 * 14 13 3 30 30 H 1.07997 * 119.96993 * 179.74567 * 15 14 13 31 31 H 1.09009 * 109.46844 * 59.99678 * 18 17 16 32 32 H 1.08997 * 109.47539 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47036 * 300.00419 * 18 17 16 34 34 H 1.07994 * 120.05917 * 180.02562 * 19 16 15 35 35 H 1.09006 * 109.47187 * 179.97438 * 22 21 20 36 36 H 1.09003 * 109.47598 * 300.00358 * 22 21 20 37 37 H 1.09003 * 109.47336 * 60.00773 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5969 1.9846 -0.8353 5 6 1.6549 2.1114 1.2943 6 1 1.5299 1.5220 2.1906 7 6 1.4620 3.4761 1.3342 8 7 1.4920 4.1772 0.2219 9 14 1.1581 4.3291 2.9679 10 1 2.3184 4.1043 3.8671 11 1 0.9835 5.7861 2.7407 12 1 -0.0687 3.7749 3.5951 13 6 3.5407 1.4446 -0.1393 14 6 4.3229 0.8093 0.8065 15 6 5.6990 0.8144 0.6845 16 6 6.2991 1.4539 -0.3913 17 8 7.6528 1.4591 -0.5105 18 6 8.3963 0.7873 0.5083 19 6 5.5165 2.0873 -1.3441 20 6 4.1355 2.0798 -1.2200 21 8 3.3656 2.6995 -2.1527 22 6 4.0458 3.3392 -3.2344 23 1 -0.3632 0.6014 -0.8334 24 1 -0.3634 -1.0223 -0.1040 25 1 -0.3633 0.4211 0.9375 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.3567 5.1373 0.2500 29 1 3.8578 0.3114 1.6444 30 1 6.3083 0.3208 1.4271 31 1 8.1086 -0.2638 0.5347 32 1 9.4618 0.8666 0.2926 33 1 8.1856 1.2460 1.4743 34 1 5.9816 2.5851 -2.1821 35 1 3.3160 3.7930 -3.9050 36 1 4.7080 4.1109 -2.8416 37 1 4.6322 2.6014 -3.7820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084400300.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:01 Heat of formation + Delta-G solvation = -62.087585 kcal Electronic energy + Delta-G solvation = -18856.009200 eV Core-core repulsion = 15984.888209 eV Total energy + Delta-G solvation = -2871.120991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.77625 -38.27948 -36.24216 -34.24713 -31.71002 -29.98012 -29.31911 -27.25347 -26.66866 -25.67118 -23.52642 -21.73544 -20.88705 -19.29316 -18.02188 -16.54666 -15.93267 -15.45818 -15.40019 -14.82449 -14.67409 -14.37996 -14.06902 -13.37592 -13.05808 -12.60812 -12.41698 -12.03946 -11.96776 -11.79992 -11.18675 -11.11133 -10.96726 -10.86732 -10.86152 -10.45640 -10.35005 -10.13586 -9.93386 -9.64618 -9.10211 -8.84880 -8.32759 -7.79298 -6.93290 -5.89322 -3.93279 2.20296 2.34359 3.36178 3.40986 3.43633 3.66356 4.18249 4.49220 4.65775 5.25687 5.35185 5.40076 5.53080 5.57698 5.60940 5.71320 5.72668 5.95834 6.00129 6.16954 6.24076 6.27422 6.39327 6.47198 6.61702 6.85954 7.00163 7.04253 7.17795 7.27357 7.31734 7.51937 7.59826 7.91907 7.93489 8.11793 8.37116 8.50421 9.13191 9.67807 11.16408 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.007992 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.286906 B = 3502.447531 C = 3669.832484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 C 0.072 3.928 4 H 0.073 0.927 5 C -0.506 4.506 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.872 5.872 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C -0.079 4.079 14 C -0.048 4.048 15 C -0.248 4.248 16 C 0.125 3.875 17 O -0.327 6.327 18 C 0.033 3.967 19 C -0.248 4.248 20 C 0.161 3.839 21 O -0.281 6.281 22 C 0.030 3.970 23 H 0.046 0.954 24 H 0.026 0.974 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.042 0.958 28 H 0.258 0.742 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.038 -5.221 -2.863 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.143 4.143 3 C 0.053 3.947 4 H 0.092 0.908 5 C -0.544 4.544 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.508 5.508 9 Si 0.709 3.291 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.080 4.080 14 C -0.067 4.067 15 C -0.267 4.267 16 C 0.081 3.919 17 O -0.241 6.241 18 C -0.063 4.063 19 C -0.268 4.268 20 C 0.115 3.885 21 O -0.193 6.193 22 C -0.066 4.066 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.132 0.868 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.139 0.861 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.912 -4.911 -3.108 9.817 hybrid contribution 0.347 0.694 1.148 1.385 sum 8.259 -4.217 -1.960 9.478 Atomic orbital electron populations 1.21584 0.96775 0.98277 1.02345 1.21546 0.95320 0.98890 0.98551 1.17914 0.85636 0.91435 0.99709 0.90839 1.20922 1.46878 0.92030 0.94571 0.92875 1.24971 0.94995 0.97806 0.95656 1.69988 1.48557 1.06676 1.25589 0.86852 0.78642 0.78593 0.85054 1.20403 1.21479 1.20334 1.20161 1.00058 0.96820 0.90948 1.20559 0.91512 0.97075 0.97519 1.20967 0.96231 1.09155 1.00337 1.18446 0.81355 0.97177 0.94971 1.85960 1.16271 1.73269 1.48621 1.22900 0.95579 0.96609 0.91179 1.20232 0.92308 1.11155 1.03059 1.18620 0.87692 0.92462 0.89702 1.86320 1.33295 1.66466 1.33222 1.22903 0.98298 0.96420 0.88936 0.93496 0.95464 0.92187 0.95056 0.93888 0.93188 0.85869 0.86784 0.93078 0.89141 0.93000 0.86057 0.89046 0.93441 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.64 37.16 0.36 -2.28 16 2 C -0.11 -2.24 5.11 -26.73 -0.14 -2.38 16 3 C 0.07 1.77 1.97 -92.92 -0.18 1.59 16 4 H 0.07 2.04 6.27 -51.93 -0.33 1.71 16 5 C -0.51 -13.53 7.05 -34.44 -0.24 -13.77 16 6 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 7 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 8 N -0.87 -25.03 12.87 55.43 0.71 -24.31 16 9 Si 0.88 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C -0.08 -1.84 4.79 -104.45 -0.50 -2.34 16 14 C -0.05 -1.02 8.86 -39.62 -0.35 -1.37 16 15 C -0.25 -4.70 9.04 -39.41 -0.36 -5.06 16 16 C 0.12 2.42 6.68 -39.24 -0.26 2.15 16 17 O -0.33 -5.58 10.49 -19.40 -0.20 -5.78 16 18 C 0.03 0.40 9.81 101.05 0.99 1.39 16 19 C -0.25 -5.03 8.97 -39.28 -0.35 -5.38 16 20 C 0.16 3.64 6.66 -39.24 -0.26 3.37 16 21 O -0.28 -6.25 9.26 -19.41 -0.18 -6.43 16 22 C 0.03 0.50 9.81 101.05 0.99 1.49 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 1.25 7.59 -51.93 -0.39 0.85 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.87 7.58 -51.92 -0.39 0.48 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.12 2.47 7.63 -52.49 -0.40 2.07 16 30 H 0.11 1.81 6.29 -52.49 -0.33 1.48 16 31 H 0.05 0.57 7.66 -51.92 -0.40 0.17 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 34 H 0.12 2.20 6.30 -52.49 -0.33 1.87 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 37 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 LS Contribution 306.46 15.07 4.62 4.62 Total: -1.00 -30.29 306.46 -5.90 -36.19 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.42 Total: 0.10 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -0.40 Total: -20.77 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.71 Total: -24.31 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.38 Total: -12.21 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.29 -5.90 -36.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400300.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.902 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds