Wall clock time and date at job start Mon Mar 30 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47606 * 2 1 4 4 H 1.08999 * 109.47291 * 305.63104 * 3 2 1 5 5 C 1.50709 * 109.46888 * 65.63020 * 3 2 1 6 6 H 1.07996 * 119.99900 * 28.16965 * 5 3 2 7 7 C 1.37879 * 119.99788 * 208.16758 * 5 3 2 8 8 N 1.31516 * 119.99976 * 6.29302 * 7 5 3 9 9 Si 1.86792 * 120.00074 * 186.29828 * 7 5 3 10 10 H 1.48508 * 109.47181 * 59.99598 * 9 7 5 11 11 H 1.48493 * 109.47435 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47334 * 300.00141 * 9 7 5 13 13 C 1.50700 * 109.47242 * 185.62688 * 3 2 1 14 14 C 1.38200 * 119.97451 * 300.23466 * 13 3 2 15 15 C 1.38158 * 120.10703 * 180.27417 * 14 13 3 16 16 C 1.38790 * 120.05408 * 359.77072 * 15 14 13 17 17 O 1.35893 * 120.02854 * 179.97438 * 16 15 14 18 18 C 1.42899 * 117.00106 * 359.97438 * 17 16 15 19 19 C 1.38619 * 119.94986 * 359.97438 * 16 15 14 20 20 C 1.38662 * 119.88593 * 359.97438 * 19 16 15 21 21 O 1.35896 * 120.02477 * 180.02562 * 20 19 16 22 22 C 1.42897 * 116.99967 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.46587 * 54.18577 * 1 2 3 24 24 H 1.08995 * 109.47514 * 174.19212 * 1 2 3 25 25 H 1.09001 * 109.46785 * 294.18959 * 1 2 3 26 26 H 1.09005 * 109.46940 * 239.99513 * 2 1 3 27 27 H 1.09009 * 109.46844 * 120.00254 * 2 1 3 28 28 H 0.96998 * 119.99700 * 180.02562 * 8 7 5 29 29 H 1.07994 * 119.94763 * 0.02591 * 14 13 3 30 30 H 1.07997 * 119.96993 * 179.74567 * 15 14 13 31 31 H 1.09009 * 109.46844 * 59.99678 * 18 17 16 32 32 H 1.08997 * 109.47539 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47036 * 300.00419 * 18 17 16 34 34 H 1.07994 * 120.05917 * 180.02562 * 19 16 15 35 35 H 1.09006 * 109.47187 * 179.97438 * 22 21 20 36 36 H 1.09003 * 109.47598 * 300.00358 * 22 21 20 37 37 H 1.09003 * 109.47336 * 60.00773 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5969 1.9846 -0.8353 5 6 1.6549 2.1114 1.2943 6 1 1.5299 1.5220 2.1906 7 6 1.4620 3.4761 1.3342 8 7 1.4920 4.1772 0.2219 9 14 1.1581 4.3291 2.9679 10 1 2.3184 4.1043 3.8671 11 1 0.9835 5.7861 2.7407 12 1 -0.0687 3.7749 3.5951 13 6 3.5407 1.4446 -0.1393 14 6 4.3229 0.8093 0.8065 15 6 5.6990 0.8144 0.6845 16 6 6.2991 1.4539 -0.3913 17 8 7.6528 1.4591 -0.5105 18 6 8.3963 0.7873 0.5083 19 6 5.5165 2.0873 -1.3441 20 6 4.1355 2.0798 -1.2200 21 8 3.3656 2.6995 -2.1527 22 6 4.0458 3.3392 -3.2344 23 1 -0.3632 0.6014 -0.8334 24 1 -0.3634 -1.0223 -0.1040 25 1 -0.3633 0.4211 0.9375 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.3567 5.1373 0.2500 29 1 3.8578 0.3114 1.6444 30 1 6.3083 0.3208 1.4271 31 1 8.1086 -0.2638 0.5347 32 1 9.4618 0.8666 0.2926 33 1 8.1856 1.2460 1.4743 34 1 5.9816 2.5851 -2.1821 35 1 3.3160 3.7930 -3.9050 36 1 4.7080 4.1109 -2.8416 37 1 4.6322 2.6014 -3.7820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084400300.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:01 Heat of formation + Delta-G solvation = -79.688663 kcal Electronic energy + Delta-G solvation = -18856.772440 eV Core-core repulsion = 15984.888209 eV Total energy + Delta-G solvation = -2871.884231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27592 -39.69771 -37.85638 -35.94121 -33.68985 -31.49325 -30.86576 -28.67179 -27.95618 -27.36110 -25.33826 -23.30298 -22.40514 -21.07672 -19.43872 -18.46240 -17.45746 -16.91128 -16.68280 -16.50680 -16.20894 -16.08739 -15.44308 -15.11415 -14.65426 -14.37757 -13.91037 -13.44688 -13.43388 -13.15427 -12.89700 -12.81629 -12.75379 -12.43697 -12.26356 -12.23926 -11.89243 -11.84999 -11.52344 -11.26735 -10.89329 -10.74585 -10.39535 -9.34556 -8.54515 -7.94785 -6.04607 0.61963 0.77254 1.42688 1.44077 1.49828 2.39299 2.48943 2.76265 3.04216 3.33913 4.01579 4.23147 4.27993 4.35769 4.44320 4.45209 4.47285 4.55906 4.62849 4.71273 4.74271 4.77164 4.84131 4.87700 5.03601 5.21367 5.30904 5.47317 5.50995 5.60950 5.69667 5.74391 5.89919 5.98290 6.17643 6.49101 6.55655 6.82100 7.09308 7.58036 9.08632 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.007992 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.286906 B = 3502.447531 C = 3669.832484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C 0.074 3.926 4 H 0.034 0.966 5 C -0.507 4.507 6 H 0.052 0.948 7 C 0.019 3.981 8 N -0.902 5.902 9 Si 0.936 3.064 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.270 1.270 13 C -0.115 4.115 14 C -0.055 4.055 15 C -0.244 4.244 16 C 0.130 3.870 17 O -0.336 6.336 18 C 0.020 3.980 19 C -0.257 4.257 20 C 0.144 3.856 21 O -0.315 6.315 22 C 0.024 3.976 23 H 0.032 0.968 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.254 0.746 29 H 0.129 0.871 30 H 0.148 0.852 31 H 0.064 0.936 32 H 0.122 0.878 33 H 0.057 0.943 34 H 0.138 0.862 35 H 0.108 0.892 36 H 0.049 0.951 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.720 -6.272 -2.097 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C 0.056 3.944 4 H 0.052 0.948 5 C -0.546 4.546 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.541 5.541 9 Si 0.762 3.238 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.195 1.195 13 C -0.116 4.116 14 C -0.073 4.073 15 C -0.263 4.263 16 C 0.085 3.915 17 O -0.250 6.250 18 C -0.074 4.074 19 C -0.276 4.276 20 C 0.098 3.902 21 O -0.228 6.228 22 C -0.071 4.071 23 H 0.051 0.949 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.076 0.924 34 H 0.155 0.845 35 H 0.127 0.873 36 H 0.067 0.933 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.606 -5.979 -2.333 11.552 hybrid contribution -0.048 0.958 0.863 1.290 sum 9.558 -5.020 -1.470 10.896 Atomic orbital electron populations 1.21526 0.95928 1.00027 1.00959 1.21492 0.96066 0.97053 0.99343 1.17740 0.86977 0.92595 0.97134 0.94763 1.21211 1.45817 0.92195 0.95330 0.92940 1.25638 0.95490 0.98665 0.98302 1.70143 1.50320 1.06389 1.27223 0.85970 0.78706 0.77392 0.81704 1.20138 1.21747 1.19485 1.20143 0.99376 0.99287 0.92822 1.20684 0.92542 0.96928 0.97117 1.21243 0.95561 1.08620 1.00844 1.18572 0.82619 0.95949 0.94356 1.85964 1.14921 1.73725 1.50382 1.23304 0.96707 0.96993 0.90386 1.20416 0.91654 1.11484 1.04071 1.18800 0.88657 0.92749 0.89951 1.86266 1.35114 1.66937 1.34435 1.23169 0.99033 0.96880 0.88017 0.94854 0.92050 0.93595 0.94234 0.92901 0.93748 0.85333 0.83435 0.91727 0.85943 0.92433 0.84457 0.87331 0.93271 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.64 71.98 0.69 -4.32 16 2 C -0.10 -4.32 5.11 30.59 0.16 -4.16 16 3 C 0.07 3.75 1.97 -12.29 -0.02 3.73 16 4 H 0.03 1.98 6.27 -2.39 -0.01 1.97 16 5 C -0.51 -27.49 7.05 25.60 0.18 -27.31 16 6 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 7 C 0.02 1.05 5.45 84.66 0.46 1.52 16 8 N -0.90 -53.40 12.87 21.45 0.28 -53.12 16 9 Si 0.94 44.38 29.54 68.60 2.03 46.41 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 C -0.11 -5.44 4.79 -19.75 -0.09 -5.53 16 14 C -0.05 -2.26 8.86 22.24 0.20 -2.06 16 15 C -0.24 -8.71 9.04 22.38 0.20 -8.50 16 16 C 0.13 4.78 6.68 22.49 0.15 4.93 16 17 O -0.34 -10.46 10.49 -92.34 -0.97 -11.43 16 18 C 0.02 0.42 9.81 113.37 1.11 1.53 16 19 C -0.26 -10.22 8.97 22.46 0.20 -10.01 16 20 C 0.14 6.58 6.66 22.49 0.15 6.73 16 21 O -0.31 -14.37 9.26 -92.38 -0.85 -15.23 16 22 C 0.02 0.78 9.81 113.37 1.11 1.89 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.90 7.59 -2.39 -0.02 1.89 16 26 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.05 2.10 7.58 -2.38 -0.02 2.08 16 28 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.13 5.03 7.63 -2.91 -0.02 5.01 16 30 H 0.15 4.15 6.29 -2.91 -0.02 4.13 16 31 H 0.06 1.18 7.66 -2.38 -0.02 1.16 16 32 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 34 H 0.14 4.83 6.30 -2.91 -0.02 4.81 16 35 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 36 H 0.05 1.57 7.66 -2.39 -0.02 1.55 16 37 H 0.07 1.83 7.66 -2.39 -0.02 1.81 16 Total: -1.00 -66.15 306.46 6.02 -60.13 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.05 Total: 14.82 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 4.50 Total: -41.58 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.28 Total: -53.12 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.82 Total: -26.66 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -66.15 6.02 -60.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400300.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.563 kcal (2) G-P(sol) polarization free energy of solvation -66.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds