Wall clock time and date at job start Mon Mar 30 2020 06:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47156 * 2 1 4 4 H 1.09007 * 109.46810 * 305.62714 * 3 2 1 5 5 C 1.50703 * 109.47397 * 185.62880 * 3 2 1 6 6 H 1.07999 * 119.99917 * 275.22800 * 5 3 2 7 7 C 1.37882 * 119.99936 * 95.22719 * 5 3 2 8 8 N 1.31509 * 119.99995 * 183.83537 * 7 5 3 9 9 Si 1.86803 * 119.99959 * 3.83778 * 7 5 3 10 10 H 1.48495 * 109.47518 * 84.94998 * 9 7 5 11 11 H 1.48504 * 109.46890 * 204.95425 * 9 7 5 12 12 H 1.48505 * 109.47055 * 324.94652 * 9 7 5 13 13 C 1.50697 * 109.47361 * 65.62595 * 3 2 1 14 14 C 1.38201 * 119.96931 * 60.00328 * 13 3 2 15 15 C 1.38152 * 120.10624 * 179.97438 * 14 13 3 16 16 C 1.38797 * 120.05923 * 359.97438 * 15 14 13 17 17 O 1.35897 * 120.03289 * 179.97438 * 16 15 14 18 18 C 1.42901 * 116.99489 * 0.02562 * 17 16 15 19 19 C 1.38614 * 119.94242 * 0.02562 * 16 15 14 20 20 C 1.38662 * 119.89157 * 359.74176 * 19 16 15 21 21 O 1.35891 * 120.02771 * 180.27431 * 20 19 16 22 22 C 1.42897 * 117.00366 * 0.23443 * 21 20 19 23 23 H 1.09006 * 109.46844 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47414 * 299.99996 * 1 2 3 25 25 H 1.08996 * 109.47022 * 60.00706 * 1 2 3 26 26 H 1.09005 * 109.47325 * 119.99791 * 2 1 3 27 27 H 1.09000 * 109.47414 * 240.00004 * 2 1 3 28 28 H 0.97001 * 119.99989 * 179.97438 * 8 7 5 29 29 H 1.07997 * 119.94613 * 359.95596 * 14 13 3 30 30 H 1.08003 * 119.97471 * 179.97438 * 15 14 13 31 31 H 1.09007 * 109.46653 * 180.02562 * 18 17 16 32 32 H 1.08999 * 109.47249 * 299.99602 * 18 17 16 33 33 H 1.08988 * 109.47419 * 60.00021 * 18 17 16 34 34 H 1.08003 * 120.05813 * 180.02562 * 19 16 15 35 35 H 1.09000 * 109.47050 * 299.99774 * 22 21 20 36 36 H 1.09004 * 109.47310 * 59.99808 * 22 21 20 37 37 H 1.08996 * 109.47346 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8354 5 6 3.5406 1.4448 -0.1394 6 1 4.1642 1.3301 0.7348 7 6 4.1172 1.5935 -1.3829 8 7 5.4236 1.5201 -1.5150 9 14 3.0428 1.8993 -2.8802 10 1 2.7561 3.3517 -2.9955 11 1 3.7509 1.4359 -4.1005 12 1 1.7671 1.1530 -2.7347 13 6 1.6546 2.1116 1.2941 14 6 2.1028 1.5987 2.4967 15 6 1.7517 2.2102 3.6847 16 6 0.9481 3.3418 3.6733 17 8 0.6027 3.9425 4.8423 18 6 1.1026 3.3558 6.0455 19 6 0.4974 3.8581 2.4684 20 6 0.8551 3.2455 1.2770 21 8 0.4193 3.7526 0.0940 22 6 -0.3998 4.9220 0.1517 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 5.8292 1.6244 -2.3900 29 1 2.7282 0.7183 2.5077 30 1 2.1028 1.8073 4.6233 31 1 0.7529 3.9312 6.9028 32 1 0.7433 2.3299 6.1261 33 1 2.1923 3.3587 6.0257 34 1 -0.1277 4.7388 2.4573 35 1 -1.3000 4.7070 0.7274 36 1 0.1535 5.7299 0.6306 37 1 -0.6774 5.2215 -0.8589 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084400302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:04 Heat of formation + Delta-G solvation = -61.411239 kcal Electronic energy + Delta-G solvation = -18859.937286 eV Core-core repulsion = 15988.845624 eV Total energy + Delta-G solvation = -2871.091662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09562 -38.58022 -36.61012 -34.38779 -31.93477 -30.12944 -29.53504 -27.72720 -26.97295 -26.29062 -22.93170 -22.14863 -21.30481 -19.22517 -18.28451 -17.01003 -16.20059 -15.71725 -15.59766 -15.19546 -15.10082 -14.49648 -14.02179 -13.72652 -12.95664 -12.80811 -12.66473 -12.28959 -12.18222 -12.06947 -11.68215 -11.53197 -11.27446 -11.10119 -10.78816 -10.70838 -10.39605 -10.18737 -9.89993 -9.67198 -9.45442 -8.99690 -8.46333 -8.06924 -7.21722 -6.02201 -4.00249 1.92152 2.05728 3.37380 3.43570 3.45752 3.49213 3.82062 4.34792 4.49970 5.12112 5.24018 5.30210 5.31477 5.32796 5.42038 5.42375 5.55135 5.67582 5.71414 5.92119 6.00362 6.06346 6.10735 6.26017 6.29718 6.58411 6.71462 6.77410 6.94812 7.00374 7.06333 7.22844 7.38887 7.55943 7.66856 7.82462 7.99365 8.57288 9.02393 9.61260 11.10698 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.007649 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.816259 B = 3659.529725 C = 3970.654917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.052 3.948 4 H 0.049 0.951 5 C -0.503 4.503 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.262 1.262 13 C -0.082 4.082 14 C -0.041 4.041 15 C -0.241 4.241 16 C 0.132 3.868 17 O -0.325 6.325 18 C 0.031 3.969 19 C -0.242 4.242 20 C 0.149 3.851 21 O -0.304 6.304 22 C 0.027 3.973 23 H 0.037 0.963 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.263 0.737 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.126 0.874 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 3.278 9.097 14.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C 0.033 3.967 4 H 0.067 0.933 5 C -0.540 4.540 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.539 5.539 9 Si 0.702 3.298 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.186 1.186 13 C -0.083 4.083 14 C -0.059 4.059 15 C -0.260 4.260 16 C 0.088 3.912 17 O -0.239 6.239 18 C -0.064 4.064 19 C -0.261 4.261 20 C 0.104 3.896 21 O -0.217 6.217 22 C -0.069 4.069 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.149 0.851 30 H 0.138 0.862 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.234 3.392 8.793 14.664 hybrid contribution -0.342 0.320 -0.501 0.686 sum -11.577 3.712 8.292 14.716 Atomic orbital electron populations 1.21856 0.98416 0.99587 1.00914 1.21818 0.92696 0.99402 1.01042 1.18182 0.96844 0.91309 0.90351 0.93305 1.20988 0.88559 1.49580 0.94894 0.90737 1.25021 0.94747 0.94462 0.98694 1.69899 1.09641 1.50349 1.24059 0.86887 0.81223 0.79346 0.82373 1.20071 1.21864 1.18631 1.19690 0.96546 0.94379 0.97700 1.20644 0.96226 0.98859 0.90185 1.21054 1.06294 0.99327 0.99283 1.18482 0.95434 0.92362 0.84961 1.85976 1.71355 1.53609 1.12960 1.22950 0.99434 0.98932 0.85111 1.20196 1.10769 1.05223 0.89908 1.18572 0.94253 0.93371 0.83416 1.86182 1.65036 1.42743 1.27722 1.22990 0.93776 0.86806 1.03299 0.94364 0.93560 0.93645 0.93002 0.92637 0.92735 0.85088 0.86221 0.88913 0.92898 0.92755 0.85619 0.93093 0.92926 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.73 37.16 0.36 -2.40 16 2 C -0.11 -2.38 5.28 -26.73 -0.14 -2.52 16 3 C 0.05 1.24 1.56 -92.92 -0.14 1.10 16 4 H 0.05 1.22 4.17 -51.93 -0.22 1.01 16 5 C -0.50 -14.05 8.64 -34.44 -0.30 -14.35 16 6 H 0.07 2.23 7.64 -52.49 -0.40 1.83 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 9 Si 0.87 22.09 26.97 -169.99 -4.58 17.51 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.26 -6.33 6.85 56.52 0.39 -5.95 16 13 C -0.08 -1.78 3.80 -104.45 -0.40 -2.18 16 14 C -0.04 -0.80 8.53 -39.63 -0.34 -1.14 16 15 C -0.24 -4.14 9.04 -39.41 -0.36 -4.49 16 16 C 0.13 2.29 6.68 -39.24 -0.26 2.03 16 17 O -0.32 -4.96 10.49 -19.42 -0.20 -5.16 16 18 C 0.03 0.33 9.81 101.05 0.99 1.33 16 19 C -0.24 -4.32 8.97 -39.29 -0.35 -4.67 16 20 C 0.15 3.00 6.66 -39.23 -0.26 2.74 16 21 O -0.30 -5.93 9.26 -19.40 -0.18 -6.11 16 22 C 0.03 0.37 9.81 101.05 0.99 1.36 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.83 7.40 -51.93 -0.38 0.44 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.05 1.05 7.20 -51.93 -0.37 0.68 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.13 2.52 7.45 -52.49 -0.39 2.13 16 30 H 0.12 1.71 6.29 -52.48 -0.33 1.38 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 33 H 0.05 0.56 7.66 -51.94 -0.40 0.17 16 34 H 0.13 1.96 6.30 -52.48 -0.33 1.63 16 35 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 36 H 0.05 0.67 7.67 -51.93 -0.40 0.28 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 301.83 15.07 4.55 4.55 Total: -1.00 -31.92 301.83 -5.23 -37.15 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.28 Total: 0.14 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -0.30 Total: -21.20 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.77 Total: -26.88 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.38 Total: -11.27 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.58 Total: 17.51 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.92 -5.23 -37.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.258 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds