Wall clock time and date at job start Mon Mar 30 2020 06:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47156 * 2 1 4 4 H 1.09007 * 109.46810 * 305.62714 * 3 2 1 5 5 C 1.50703 * 109.47397 * 185.62880 * 3 2 1 6 6 H 1.07999 * 119.99917 * 275.22800 * 5 3 2 7 7 C 1.37882 * 119.99936 * 95.22719 * 5 3 2 8 8 N 1.31509 * 119.99995 * 183.83537 * 7 5 3 9 9 Si 1.86803 * 119.99959 * 3.83778 * 7 5 3 10 10 H 1.48495 * 109.47518 * 84.94998 * 9 7 5 11 11 H 1.48504 * 109.46890 * 204.95425 * 9 7 5 12 12 H 1.48505 * 109.47055 * 324.94652 * 9 7 5 13 13 C 1.50697 * 109.47361 * 65.62595 * 3 2 1 14 14 C 1.38201 * 119.96931 * 60.00328 * 13 3 2 15 15 C 1.38152 * 120.10624 * 179.97438 * 14 13 3 16 16 C 1.38797 * 120.05923 * 359.97438 * 15 14 13 17 17 O 1.35897 * 120.03289 * 179.97438 * 16 15 14 18 18 C 1.42901 * 116.99489 * 0.02562 * 17 16 15 19 19 C 1.38614 * 119.94242 * 0.02562 * 16 15 14 20 20 C 1.38662 * 119.89157 * 359.74176 * 19 16 15 21 21 O 1.35891 * 120.02771 * 180.27431 * 20 19 16 22 22 C 1.42897 * 117.00366 * 0.23443 * 21 20 19 23 23 H 1.09006 * 109.46844 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47414 * 299.99996 * 1 2 3 25 25 H 1.08996 * 109.47022 * 60.00706 * 1 2 3 26 26 H 1.09005 * 109.47325 * 119.99791 * 2 1 3 27 27 H 1.09000 * 109.47414 * 240.00004 * 2 1 3 28 28 H 0.97001 * 119.99989 * 179.97438 * 8 7 5 29 29 H 1.07997 * 119.94613 * 359.95596 * 14 13 3 30 30 H 1.08003 * 119.97471 * 179.97438 * 15 14 13 31 31 H 1.09007 * 109.46653 * 180.02562 * 18 17 16 32 32 H 1.08999 * 109.47249 * 299.99602 * 18 17 16 33 33 H 1.08988 * 109.47419 * 60.00021 * 18 17 16 34 34 H 1.08003 * 120.05813 * 180.02562 * 19 16 15 35 35 H 1.09000 * 109.47050 * 299.99774 * 22 21 20 36 36 H 1.09004 * 109.47310 * 59.99808 * 22 21 20 37 37 H 1.08996 * 109.47346 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8354 5 6 3.5406 1.4448 -0.1394 6 1 4.1642 1.3301 0.7348 7 6 4.1172 1.5935 -1.3829 8 7 5.4236 1.5201 -1.5150 9 14 3.0428 1.8993 -2.8802 10 1 2.7561 3.3517 -2.9955 11 1 3.7509 1.4359 -4.1005 12 1 1.7671 1.1530 -2.7347 13 6 1.6546 2.1116 1.2941 14 6 2.1028 1.5987 2.4967 15 6 1.7517 2.2102 3.6847 16 6 0.9481 3.3418 3.6733 17 8 0.6027 3.9425 4.8423 18 6 1.1026 3.3558 6.0455 19 6 0.4974 3.8581 2.4684 20 6 0.8551 3.2455 1.2770 21 8 0.4193 3.7526 0.0940 22 6 -0.3998 4.9220 0.1517 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 5.8292 1.6244 -2.3900 29 1 2.7282 0.7183 2.5077 30 1 2.1028 1.8073 4.6233 31 1 0.7529 3.9312 6.9028 32 1 0.7433 2.3299 6.1261 33 1 2.1923 3.3587 6.0257 34 1 -0.1277 4.7388 2.4573 35 1 -1.3000 4.7070 0.7274 36 1 0.1535 5.7299 0.6306 37 1 -0.6774 5.2215 -0.8589 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084400302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:04 Heat of formation + Delta-G solvation = -81.614488 kcal Electronic energy + Delta-G solvation = -18860.813365 eV Core-core repulsion = 15988.845624 eV Total energy + Delta-G solvation = -2871.967741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46101 -39.82958 -38.09765 -36.01079 -34.02476 -31.50996 -30.95983 -29.27003 -28.03144 -27.68313 -24.77282 -23.62420 -22.67829 -20.91562 -19.57842 -18.98515 -17.60186 -17.07847 -16.86111 -16.72346 -16.32184 -15.95327 -15.59954 -15.18620 -14.71013 -14.46720 -14.10612 -13.85415 -13.56282 -13.38187 -13.07095 -13.06167 -12.73163 -12.50578 -12.35437 -12.05467 -11.99184 -11.80066 -11.63395 -11.36651 -11.15105 -10.96224 -10.63770 -9.45990 -8.67960 -8.24913 -6.25540 0.49299 0.61910 1.35694 1.37094 1.48637 2.29658 2.38565 2.60483 2.88086 3.14871 3.91165 4.12681 4.16331 4.30370 4.36724 4.42154 4.44713 4.49568 4.51610 4.60016 4.65033 4.72668 4.73022 4.79173 4.82929 4.99272 5.18853 5.32232 5.33785 5.44482 5.48339 5.62490 5.75798 5.79118 5.88160 6.38633 6.42605 6.63221 6.80075 7.38702 8.91607 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.007649 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.816259 B = 3659.529725 C = 3970.654917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.056 3.944 4 H 0.038 0.962 5 C -0.499 4.499 6 H 0.038 0.962 7 C 0.014 3.986 8 N -0.950 5.950 9 Si 0.933 3.067 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.245 1.245 13 C -0.119 4.119 14 C -0.050 4.050 15 C -0.238 4.238 16 C 0.140 3.860 17 O -0.331 6.331 18 C 0.019 3.981 19 C -0.244 4.244 20 C 0.143 3.857 21 O -0.333 6.333 22 C 0.017 3.983 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.123 0.877 30 H 0.149 0.851 31 H 0.124 0.876 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.149 0.851 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.786 3.994 10.293 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.037 3.963 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.057 0.943 7 C -0.183 4.183 8 N -0.591 5.591 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.169 1.169 13 C -0.120 4.120 14 C -0.069 4.069 15 C -0.257 4.257 16 C 0.094 3.906 17 O -0.245 6.245 18 C -0.075 4.075 19 C -0.264 4.264 20 C 0.097 3.903 21 O -0.246 6.246 22 C -0.078 4.078 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.141 0.859 30 H 0.167 0.833 31 H 0.142 0.858 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.167 0.833 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.739 4.111 10.012 17.490 hybrid contribution 0.417 0.158 -0.658 0.795 sum -13.322 4.269 9.354 16.828 Atomic orbital electron populations 1.21727 0.95622 1.01333 1.00960 1.21704 0.95171 0.97506 1.00469 1.18037 0.93676 0.92954 0.91644 0.94415 1.21284 0.90974 1.47915 0.93513 0.94340 1.25808 0.95837 0.94807 1.01801 1.70039 1.11500 1.52796 1.24773 0.85943 0.80130 0.79365 0.78809 1.19818 1.21463 1.16903 1.19564 0.99314 0.96100 0.97045 1.20665 0.96359 0.99034 0.90810 1.21268 1.05812 0.99139 0.99466 1.18612 0.94280 0.91814 0.85862 1.85985 1.71333 1.53842 1.13347 1.23333 0.99935 1.00212 0.84057 1.20413 1.10803 1.05739 0.89406 1.18621 0.94179 0.93005 0.84455 1.86126 1.65949 1.44666 1.27904 1.23337 0.93894 0.85251 1.05280 0.91712 0.93214 0.93863 0.92685 0.94137 0.92753 0.85915 0.83349 0.85828 0.91700 0.92320 0.83335 0.91078 0.92145 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.73 71.98 0.70 -4.16 16 2 C -0.11 -4.70 5.28 30.59 0.16 -4.54 16 3 C 0.06 2.69 1.56 -12.29 -0.02 2.67 16 4 H 0.04 1.89 4.17 -2.38 -0.01 1.88 16 5 C -0.50 -28.92 8.64 25.60 0.22 -28.70 16 6 H 0.04 2.44 7.64 -2.91 -0.02 2.41 16 7 C 0.01 0.83 5.47 84.66 0.46 1.29 16 8 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 9 Si 0.93 46.32 26.97 68.60 1.85 48.17 16 10 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 12 H -0.25 -11.40 6.85 99.48 0.68 -10.72 16 13 C -0.12 -5.17 3.80 -19.75 -0.08 -5.24 16 14 C -0.05 -1.98 8.53 22.24 0.19 -1.79 16 15 C -0.24 -7.77 9.04 22.38 0.20 -7.57 16 16 C 0.14 4.50 6.68 22.49 0.15 4.65 16 17 O -0.33 -9.00 10.49 -92.39 -0.97 -9.97 16 18 C 0.02 0.34 9.81 113.37 1.11 1.45 16 19 C -0.24 -8.21 8.97 22.46 0.20 -8.01 16 20 C 0.14 5.61 6.66 22.49 0.15 5.76 16 21 O -0.33 -12.58 9.26 -92.33 -0.85 -13.43 16 22 C 0.02 0.42 9.81 113.37 1.11 1.53 16 23 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 24 H 0.05 1.70 7.40 -2.39 -0.02 1.68 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 2.25 7.20 -2.38 -0.02 2.23 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.12 4.86 7.45 -2.91 -0.02 4.84 16 30 H 0.15 3.85 6.29 -2.91 -0.02 3.83 16 31 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 33 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 34 H 0.15 4.18 6.30 -2.91 -0.02 4.16 16 35 H 0.07 1.48 7.65 -2.39 -0.02 1.47 16 36 H 0.06 1.41 7.67 -2.39 -0.02 1.39 16 37 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -70.79 301.83 5.92 -64.86 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.03 Total: 13.22 kcal Atomic # 6 Polarization: -47.23 SS G_CDS: 4.57 Total: -42.66 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.30 Total: -60.19 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -1.82 Total: -23.40 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.85 Total: 48.17 kcal Total: -70.79 5.92 -64.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.751 kcal (2) G-P(sol) polarization free energy of solvation -70.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds