Wall clock time and date at job start Mon Mar 30 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 H 1.09000 * 109.46832 * 305.79463 * 3 2 1 5 5 C 1.50701 * 109.47257 * 65.79555 * 3 2 1 6 6 H 1.08005 * 119.99816 * 84.53400 * 5 3 2 7 7 C 1.37878 * 120.00246 * 264.52904 * 5 3 2 8 8 N 1.31513 * 119.99967 * 171.98925 * 7 5 3 9 9 Si 1.86802 * 120.00016 * 351.99650 * 7 5 3 10 10 H 1.48500 * 109.47193 * 93.37128 * 9 7 5 11 11 H 1.48495 * 109.46996 * 213.37371 * 9 7 5 12 12 H 1.48510 * 109.46927 * 333.37422 * 9 7 5 13 13 C 1.50704 * 109.46999 * 185.79795 * 3 2 1 14 14 C 1.38280 * 119.99883 * 299.97565 * 13 3 2 15 15 C 1.38210 * 120.14427 * 180.02562 * 14 13 3 16 16 C 1.38285 * 120.14549 * 0.02562 * 15 14 13 17 17 C 1.38525 * 120.00066 * 359.72627 * 16 15 14 18 18 O 1.35998 * 120.07327 * 180.27387 * 17 16 15 19 19 C 1.42898 * 116.99777 * 0.25333 * 18 17 16 20 20 C 1.38521 * 119.99864 * 119.99571 * 13 3 2 21 21 O 1.35994 * 120.07378 * 359.97438 * 20 13 3 22 22 C 1.42905 * 116.99995 * 89.99786 * 21 20 13 23 23 H 1.09001 * 109.47304 * 63.30711 * 1 2 3 24 24 H 1.08997 * 109.47209 * 183.30585 * 1 2 3 25 25 H 1.09000 * 109.47554 * 303.30894 * 1 2 3 26 26 H 1.08994 * 109.47084 * 239.99599 * 2 1 3 27 27 H 1.09007 * 109.46923 * 119.99554 * 2 1 3 28 28 H 0.96999 * 119.99776 * 179.97438 * 8 7 5 29 29 H 1.07999 * 119.92689 * 0.02562 * 14 13 3 30 30 H 1.07998 * 119.92869 * 180.02562 * 15 14 13 31 31 H 1.08003 * 119.99935 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47434 * 60.00619 * 19 18 17 33 33 H 1.09004 * 109.46858 * 180.02562 * 19 18 17 34 34 H 1.08994 * 109.47724 * 299.99815 * 19 18 17 35 35 H 1.09007 * 109.47026 * 179.97438 * 22 21 20 36 36 H 1.08998 * 109.46831 * 299.99792 * 22 21 20 37 37 H 1.08996 * 109.47117 * 60.00012 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5943 1.9854 -0.8336 5 6 1.6582 2.1103 1.2959 6 1 2.2826 1.9914 2.1691 7 6 0.5119 2.8732 1.3668 8 7 0.0937 3.3252 2.5289 9 14 -0.4473 3.2646 -0.1876 10 1 -1.5165 2.2518 -0.3778 11 1 -1.0582 4.6126 -0.0660 12 1 0.4706 3.2405 -1.3549 13 6 3.5401 1.4449 -0.1435 14 6 4.3262 0.8131 0.8025 15 6 5.7023 0.8139 0.6741 16 6 6.2992 1.4471 -0.4007 17 6 5.5172 2.0774 -1.3547 18 8 6.1024 2.6957 -2.4153 19 6 7.5289 2.6515 -2.4858 20 6 4.1316 2.0804 -1.2230 21 8 3.3599 2.7022 -2.1543 22 6 3.0536 4.0796 -1.9283 23 1 -0.3634 0.4616 -0.9181 24 1 -0.3633 -1.0259 0.0593 25 1 -0.3634 0.5643 0.8588 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 -0.7126 3.8622 2.5787 29 1 3.8638 0.3180 1.6436 30 1 6.3129 0.3191 1.4149 31 1 7.3747 1.4459 -0.4989 32 1 7.8584 1.6136 -2.5337 33 1 7.8652 3.1813 -3.3772 34 1 7.9515 3.1264 -1.6004 35 1 2.4338 4.4525 -2.7438 36 1 2.5153 4.1822 -0.9861 37 1 3.9784 4.6547 -1.8830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084400304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:06 Heat of formation + Delta-G solvation = -55.404160 kcal Electronic energy + Delta-G solvation = -19152.148934 eV Core-core repulsion = 16281.317758 eV Total energy + Delta-G solvation = -2870.831176 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07134 -37.90738 -36.55334 -34.78972 -31.81348 -30.06191 -29.56436 -27.17187 -27.01519 -25.87635 -23.65317 -21.93356 -21.29288 -19.33342 -17.50158 -17.21403 -16.60318 -15.87482 -15.62355 -14.69404 -14.53310 -14.18627 -14.12986 -13.67616 -13.36935 -12.93677 -12.71456 -12.36814 -12.13502 -11.75100 -11.47216 -11.32875 -11.27565 -10.87015 -10.72387 -10.45543 -10.32384 -10.22758 -9.71292 -9.54787 -9.22997 -8.92786 -8.53521 -7.89566 -7.63498 -6.11300 -4.09497 1.76473 1.96767 3.27799 3.38044 3.40685 3.52763 4.03299 4.39415 4.60763 5.08623 5.18943 5.22035 5.29923 5.43561 5.52862 5.80050 5.83599 5.88777 5.93736 6.01015 6.14157 6.16470 6.28448 6.30882 6.57699 6.66125 6.73758 6.79625 6.92234 7.10814 7.13371 7.23623 7.33805 7.48759 7.59602 7.75022 8.22321 8.48174 8.93787 9.50856 11.00866 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.008313 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.670908 B = 3367.440165 C = 3767.596512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C 0.030 3.970 4 H 0.061 0.939 5 C -0.501 4.501 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.897 5.897 9 Si 0.858 3.142 10 H -0.271 1.271 11 H -0.294 1.294 12 H -0.250 1.250 13 C -0.006 4.006 14 C -0.134 4.134 15 C -0.090 4.090 16 C -0.224 4.224 17 C 0.103 3.897 18 O -0.312 6.312 19 C 0.029 3.971 20 C 0.049 3.951 21 O -0.324 6.324 22 C 0.035 3.965 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.054 0.946 28 H 0.264 0.736 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.414 -2.412 -7.493 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C 0.012 3.988 4 H 0.079 0.921 5 C -0.538 4.538 6 H 0.095 0.905 7 C -0.125 4.125 8 N -0.534 5.534 9 Si 0.685 3.315 10 H -0.197 1.197 11 H -0.221 1.221 12 H -0.174 1.174 13 C -0.006 4.006 14 C -0.152 4.152 15 C -0.109 4.109 16 C -0.243 4.243 17 C 0.058 3.942 18 O -0.226 6.226 19 C -0.067 4.067 20 C 0.005 3.995 21 O -0.240 6.240 22 C -0.060 4.060 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.099 -2.263 -7.720 12.911 hybrid contribution -0.175 0.451 -0.365 0.606 sum 9.924 -1.812 -8.085 12.928 Atomic orbital electron populations 1.21848 0.96934 0.99894 1.01982 1.21616 0.95305 0.98126 0.99174 1.18573 0.86456 0.94470 0.99349 0.92144 1.20909 1.08299 1.29875 0.94722 0.90545 1.25002 0.96672 0.95249 0.95582 1.69907 1.23657 1.36116 1.23766 0.87285 0.81042 0.77612 0.85523 1.19705 1.22076 1.17434 1.20596 0.98872 0.91766 0.89393 1.20907 0.92553 1.01944 0.99784 1.20892 0.95010 0.98240 0.96716 1.20883 0.98985 1.06603 0.97784 1.19401 0.91715 0.95198 0.87906 1.86136 1.21108 1.72336 1.42984 1.22968 0.79663 1.01612 1.02454 1.17903 0.85665 1.02656 0.93272 1.86004 1.68954 1.24233 1.44811 1.22998 0.99491 0.81120 1.02379 0.94363 0.94418 0.90779 0.94880 0.92686 0.92639 0.85369 0.86355 0.86096 0.93029 0.88829 0.93062 0.89933 0.92479 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.26 37.16 0.31 -2.83 16 2 C -0.10 -2.21 5.11 -26.73 -0.14 -2.35 16 3 C 0.03 0.71 1.92 -92.92 -0.18 0.53 16 4 H 0.06 1.48 3.37 -51.93 -0.18 1.31 16 5 C -0.50 -13.41 8.07 -34.44 -0.28 -13.69 16 6 H 0.08 2.22 7.64 -52.48 -0.40 1.82 16 7 C 0.08 2.13 4.62 -17.82 -0.08 2.04 16 8 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 9 Si 0.86 20.88 23.99 -169.99 -4.08 16.80 16 10 H -0.27 -6.45 6.60 56.52 0.37 -6.07 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.25 -5.82 5.23 56.52 0.30 -5.53 16 13 C -0.01 -0.12 4.78 -104.50 -0.50 -0.62 16 14 C -0.13 -2.59 8.66 -39.58 -0.34 -2.93 16 15 C -0.09 -1.49 10.04 -39.57 -0.40 -1.88 16 16 C -0.22 -3.61 9.04 -39.46 -0.36 -3.96 16 17 C 0.10 1.91 6.70 -39.12 -0.26 1.65 16 18 O -0.31 -5.26 10.28 -34.21 -0.35 -5.61 16 19 C 0.03 0.32 9.81 101.05 0.99 1.31 16 20 C 0.05 1.04 5.71 -39.12 -0.22 0.82 16 21 O -0.32 -6.97 9.05 -34.20 -0.31 -7.28 16 22 C 0.03 0.66 10.42 101.05 1.05 1.72 16 23 H 0.04 0.79 6.76 -51.93 -0.35 0.43 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 1.73 5.79 -51.93 -0.30 1.43 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 1.13 7.60 -51.93 -0.39 0.74 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.13 2.44 7.56 -52.49 -0.40 2.05 16 30 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.12 1.55 6.30 -52.48 -0.33 1.22 16 32 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.52 7.65 -51.93 -0.40 0.13 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.06 1.20 7.36 -51.93 -0.38 0.82 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 294.13 15.07 4.43 4.43 Total: -1.00 -30.43 294.13 -5.27 -35.70 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.33 Total: 1.91 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -0.41 Total: -20.19 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.77 Total: -25.76 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.66 Total: -12.89 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.08 Total: 16.80 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.43 -5.27 -35.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.703 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds