Wall clock time and date at job start Mon Mar 30 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47012 * 2 1 4 4 H 1.09000 * 109.46832 * 305.79463 * 3 2 1 5 5 C 1.50701 * 109.47257 * 65.79555 * 3 2 1 6 6 H 1.08005 * 119.99816 * 84.53400 * 5 3 2 7 7 C 1.37878 * 120.00246 * 264.52904 * 5 3 2 8 8 N 1.31513 * 119.99967 * 171.98925 * 7 5 3 9 9 Si 1.86802 * 120.00016 * 351.99650 * 7 5 3 10 10 H 1.48500 * 109.47193 * 93.37128 * 9 7 5 11 11 H 1.48495 * 109.46996 * 213.37371 * 9 7 5 12 12 H 1.48510 * 109.46927 * 333.37422 * 9 7 5 13 13 C 1.50704 * 109.46999 * 185.79795 * 3 2 1 14 14 C 1.38280 * 119.99883 * 299.97565 * 13 3 2 15 15 C 1.38210 * 120.14427 * 180.02562 * 14 13 3 16 16 C 1.38285 * 120.14549 * 0.02562 * 15 14 13 17 17 C 1.38525 * 120.00066 * 359.72627 * 16 15 14 18 18 O 1.35998 * 120.07327 * 180.27387 * 17 16 15 19 19 C 1.42898 * 116.99777 * 0.25333 * 18 17 16 20 20 C 1.38521 * 119.99864 * 119.99571 * 13 3 2 21 21 O 1.35994 * 120.07378 * 359.97438 * 20 13 3 22 22 C 1.42905 * 116.99995 * 89.99786 * 21 20 13 23 23 H 1.09001 * 109.47304 * 63.30711 * 1 2 3 24 24 H 1.08997 * 109.47209 * 183.30585 * 1 2 3 25 25 H 1.09000 * 109.47554 * 303.30894 * 1 2 3 26 26 H 1.08994 * 109.47084 * 239.99599 * 2 1 3 27 27 H 1.09007 * 109.46923 * 119.99554 * 2 1 3 28 28 H 0.96999 * 119.99776 * 179.97438 * 8 7 5 29 29 H 1.07999 * 119.92689 * 0.02562 * 14 13 3 30 30 H 1.07998 * 119.92869 * 180.02562 * 15 14 13 31 31 H 1.08003 * 119.99935 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47434 * 60.00619 * 19 18 17 33 33 H 1.09004 * 109.46858 * 180.02562 * 19 18 17 34 34 H 1.08994 * 109.47724 * 299.99815 * 19 18 17 35 35 H 1.09007 * 109.47026 * 179.97438 * 22 21 20 36 36 H 1.08998 * 109.46831 * 299.99792 * 22 21 20 37 37 H 1.08996 * 109.47117 * 60.00012 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5943 1.9854 -0.8336 5 6 1.6582 2.1103 1.2959 6 1 2.2826 1.9914 2.1691 7 6 0.5119 2.8732 1.3668 8 7 0.0937 3.3252 2.5289 9 14 -0.4473 3.2646 -0.1876 10 1 -1.5165 2.2518 -0.3778 11 1 -1.0582 4.6126 -0.0660 12 1 0.4706 3.2405 -1.3549 13 6 3.5401 1.4449 -0.1435 14 6 4.3262 0.8131 0.8025 15 6 5.7023 0.8139 0.6741 16 6 6.2992 1.4471 -0.4007 17 6 5.5172 2.0774 -1.3547 18 8 6.1024 2.6957 -2.4153 19 6 7.5289 2.6515 -2.4858 20 6 4.1316 2.0804 -1.2230 21 8 3.3599 2.7022 -2.1543 22 6 3.0536 4.0796 -1.9283 23 1 -0.3634 0.4616 -0.9181 24 1 -0.3633 -1.0259 0.0593 25 1 -0.3634 0.5643 0.8588 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 -0.7126 3.8622 2.5787 29 1 3.8638 0.3180 1.6436 30 1 6.3129 0.3191 1.4149 31 1 7.3747 1.4459 -0.4989 32 1 7.8584 1.6136 -2.5337 33 1 7.8652 3.1813 -3.3772 34 1 7.9515 3.1264 -1.6004 35 1 2.4338 4.4525 -2.7438 36 1 2.5153 4.1822 -0.9861 37 1 3.9784 4.6547 -1.8830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084400304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:06 Heat of formation + Delta-G solvation = -74.543517 kcal Electronic energy + Delta-G solvation = -19152.978879 eV Core-core repulsion = 16281.317758 eV Total energy + Delta-G solvation = -2871.661121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.46222 -39.26463 -38.07534 -36.46823 -33.86433 -31.58227 -30.91073 -28.77515 -28.21429 -27.41964 -25.48667 -23.37392 -22.77621 -20.99135 -19.17758 -18.92709 -17.98621 -17.39120 -16.87165 -16.28122 -16.04995 -15.73956 -15.52082 -15.20038 -15.14281 -14.71800 -14.23528 -13.95426 -13.46588 -13.28840 -13.10822 -12.78511 -12.63426 -12.49958 -12.16217 -12.07848 -12.02720 -11.75629 -11.61409 -11.33156 -10.94101 -10.72104 -10.59407 -9.40859 -9.00874 -8.26510 -6.26857 0.34001 0.54703 1.32256 1.36630 1.46072 2.35328 2.38166 2.60256 3.06147 3.19239 3.95188 4.09083 4.30982 4.31498 4.39962 4.43734 4.44378 4.48261 4.49589 4.58038 4.63607 4.64900 4.74283 4.79812 4.96251 5.08692 5.10751 5.30132 5.36455 5.43355 5.49028 5.59877 5.74595 5.83026 5.88743 6.29102 6.36558 6.74860 6.79649 7.36754 8.89291 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.008313 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.670908 B = 3367.440165 C = 3767.596512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C 0.033 3.967 4 H 0.049 0.951 5 C -0.491 4.491 6 H 0.040 0.960 7 C 0.030 3.970 8 N -0.945 5.945 9 Si 0.908 3.092 10 H -0.260 1.260 11 H -0.297 1.297 12 H -0.236 1.236 13 C -0.036 4.036 14 C -0.151 4.151 15 C -0.079 4.079 16 C -0.211 4.211 17 C 0.102 3.898 18 O -0.332 6.332 19 C 0.017 3.983 20 C 0.020 3.980 21 O -0.340 6.340 22 C 0.034 3.966 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.263 0.737 29 H 0.120 0.880 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.028 0.972 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.639 -3.200 -9.248 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 C 0.015 3.985 4 H 0.067 0.933 5 C -0.529 4.529 6 H 0.059 0.941 7 C -0.168 4.168 8 N -0.586 5.586 9 Si 0.733 3.267 10 H -0.185 1.185 11 H -0.224 1.224 12 H -0.160 1.160 13 C -0.037 4.037 14 C -0.170 4.170 15 C -0.096 4.096 16 C -0.229 4.229 17 C 0.056 3.944 18 O -0.246 6.246 19 C -0.077 4.077 20 C -0.023 4.023 21 O -0.256 6.256 22 C -0.060 4.060 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.138 0.862 30 H 0.175 0.825 31 H 0.180 0.820 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.047 0.953 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.348 -3.066 -9.496 15.876 hybrid contribution -0.656 0.673 0.184 0.958 sum 11.692 -2.393 -9.311 15.137 Atomic orbital electron populations 1.21822 0.96673 1.01410 1.00620 1.21545 0.95521 0.96816 1.00017 1.18438 0.88413 0.95101 0.96595 0.93279 1.21044 1.07258 1.29284 0.95271 0.94139 1.25639 0.97765 0.95374 0.97997 1.70036 1.24644 1.37963 1.25932 0.86476 0.80178 0.77283 0.82738 1.18540 1.22449 1.15968 1.20494 0.97892 0.94105 0.91199 1.20968 0.94138 1.02610 0.99265 1.21279 0.93890 0.97130 0.97337 1.21331 1.00865 1.04437 0.96291 1.19454 0.91078 0.95089 0.88780 1.86111 1.24239 1.71949 1.42257 1.23369 0.76658 1.03333 1.04381 1.18121 0.87116 1.03526 0.93585 1.85963 1.69462 1.25052 1.45167 1.23071 1.00240 0.80827 1.01869 0.94156 0.91316 0.93778 0.93071 0.92650 0.92755 0.86208 0.82544 0.82001 0.91375 0.86407 0.91698 0.87560 0.95295 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.09 8.26 71.98 0.59 -5.50 16 2 C -0.10 -4.26 5.11 30.59 0.16 -4.10 16 3 C 0.03 1.58 1.92 -12.28 -0.02 1.56 16 4 H 0.05 2.43 3.37 -2.39 -0.01 2.42 16 5 C -0.49 -27.31 8.07 25.60 0.21 -27.10 16 6 H 0.04 2.48 7.64 -2.91 -0.02 2.46 16 7 C 0.03 1.69 4.62 84.66 0.39 2.08 16 8 N -0.95 -58.24 13.96 21.45 0.30 -57.94 16 9 Si 0.91 43.94 23.99 68.60 1.65 45.58 16 10 H -0.26 -12.03 6.60 99.48 0.66 -11.37 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.24 -10.79 5.23 99.48 0.52 -10.27 16 13 C -0.04 -1.58 4.78 -19.79 -0.09 -1.67 16 14 C -0.15 -5.79 8.66 22.27 0.19 -5.60 16 15 C -0.08 -2.35 10.04 22.27 0.22 -2.13 16 16 C -0.21 -6.00 9.04 22.35 0.20 -5.80 16 17 C 0.10 3.54 6.70 22.57 0.15 3.69 16 18 O -0.33 -10.24 10.28 -79.68 -0.82 -11.06 16 19 C 0.02 0.31 9.81 113.37 1.11 1.42 16 20 C 0.02 0.85 5.71 22.57 0.13 0.98 16 21 O -0.34 -14.48 9.05 -79.63 -0.72 -15.20 16 22 C 0.03 1.29 10.42 113.37 1.18 2.48 16 23 H 0.04 1.61 6.76 -2.39 -0.02 1.59 16 24 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.04 2.07 5.79 -2.39 -0.01 2.05 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.05 2.29 7.60 -2.38 -0.02 2.27 16 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.12 4.65 7.56 -2.91 -0.02 4.63 16 30 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.16 3.23 6.30 -2.91 -0.02 3.22 16 32 H 0.07 1.04 7.67 -2.39 -0.02 1.02 16 33 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.06 1.03 7.65 -2.39 -0.02 1.01 16 35 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 36 H 0.03 1.23 7.36 -2.39 -0.02 1.21 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -68.48 294.13 5.65 -62.83 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.82 Total: 15.47 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 4.42 Total: -39.69 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.30 Total: -57.94 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -1.54 Total: -26.26 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.65 Total: 45.58 kcal Total: -68.48 5.65 -62.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.710 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds