Wall clock time and date at job start Mon Mar 30 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 C 1.50699 * 109.47592 * 64.99619 * 3 2 1 14 14 C 1.38297 * 119.99680 * 59.72279 * 13 3 2 15 15 C 1.38207 * 120.14256 * 179.77498 * 14 13 3 16 16 C 1.38279 * 120.15040 * 0.50081 * 15 14 13 17 17 C 1.38526 * 120.00011 * 359.75209 * 16 15 14 18 18 O 1.35997 * 120.07738 * 180.02562 * 17 16 15 19 19 C 1.42902 * 116.99845 * 359.97438 * 18 17 16 20 20 C 1.38522 * 120.00676 * 240.00158 * 13 3 2 21 21 O 1.35994 * 120.06880 * 359.97438 * 20 13 3 22 22 C 1.42901 * 117.00022 * 90.00144 * 21 20 13 23 23 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 25 25 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 26 26 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 27 27 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 29 29 H 1.07997 * 119.92689 * 0.02562 * 14 13 3 30 30 H 1.08001 * 119.92525 * 180.23444 * 15 14 13 31 31 H 1.08003 * 120.00422 * 179.72689 * 16 15 14 32 32 H 1.09007 * 109.47105 * 59.99301 * 19 18 17 33 33 H 1.08992 * 109.47258 * 179.97438 * 19 18 17 34 34 H 1.09007 * 109.47102 * 299.99846 * 19 18 17 35 35 H 1.09007 * 109.47279 * 300.00156 * 22 21 20 36 36 H 1.09002 * 109.47449 * 59.99880 * 22 21 20 37 37 H 1.09000 * 109.47259 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 6 1.6412 2.1164 1.2876 14 6 2.0720 1.6047 2.4980 15 6 1.7120 2.2230 3.6805 16 6 0.9109 3.3499 3.6591 17 6 0.4715 3.8645 2.4504 18 8 -0.3160 4.9730 2.4275 19 6 -0.6525 5.5559 3.6881 20 6 0.8383 3.2449 1.2592 21 8 0.4096 3.7463 0.0700 22 6 -0.8320 3.2494 -0.4338 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8771 0.4812 -2.1123 29 1 2.6945 0.7224 2.5191 30 1 2.0536 1.8226 4.6236 31 1 0.6273 3.8286 4.5848 32 1 0.2594 5.8549 4.2052 33 1 -1.2822 6.4308 3.5274 34 1 -1.1909 4.8265 4.2935 35 1 -0.7598 2.1715 -0.5793 36 1 -1.6269 3.4672 0.2796 37 1 -1.0562 3.7300 -1.3860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084400306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:09 Heat of formation + Delta-G solvation = -49.720232 kcal Electronic energy + Delta-G solvation = -19188.232448 eV Core-core repulsion = 16317.647746 eV Total energy + Delta-G solvation = -2870.584702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.15272 -38.00817 -36.61378 -34.83681 -31.95998 -30.09813 -29.51544 -27.39219 -27.07569 -26.23424 -23.03079 -22.18693 -21.56818 -19.62786 -17.47730 -16.99783 -16.64113 -15.85417 -15.67404 -15.06271 -14.68128 -14.48163 -14.13555 -13.69156 -13.29169 -13.16802 -12.61248 -12.46156 -12.11638 -11.84741 -11.56088 -11.42391 -11.35501 -10.97891 -10.91231 -10.64646 -10.44941 -10.24545 -9.77535 -9.49315 -9.18976 -9.08974 -8.53999 -7.93862 -7.66119 -6.05648 -4.04662 1.73287 1.93009 3.27215 3.39540 3.41537 3.50058 4.02112 4.42017 4.48475 5.06552 5.20199 5.24277 5.26416 5.40851 5.50366 5.62586 5.68750 5.74969 5.81619 5.87090 5.93420 5.95875 6.02384 6.12724 6.29533 6.54837 6.63217 6.67625 6.78078 6.87361 6.95853 7.08477 7.28079 7.49582 7.63167 7.73408 8.17830 8.52358 8.98702 9.55061 11.07135 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.007800 C = 0.007225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.711771 B = 3589.018984 C = 3874.389741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.124 4.124 3 C 0.045 3.955 4 H 0.047 0.953 5 C -0.504 4.504 6 H 0.077 0.923 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.263 1.263 12 H -0.297 1.297 13 C -0.002 4.002 14 C -0.131 4.131 15 C -0.091 4.091 16 C -0.222 4.222 17 C 0.102 3.898 18 O -0.312 6.312 19 C 0.028 3.972 20 C 0.053 3.947 21 O -0.317 6.317 22 C 0.026 3.974 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.264 0.736 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.037 0.963 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.203 3.141 8.193 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C 0.026 3.974 4 H 0.065 0.935 5 C -0.542 4.542 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.714 3.286 10 H -0.206 1.206 11 H -0.188 1.188 12 H -0.225 1.225 13 C -0.003 4.003 14 C -0.150 4.150 15 C -0.109 4.109 16 C -0.240 4.240 17 C 0.056 3.944 18 O -0.225 6.225 19 C -0.067 4.067 20 C 0.008 3.992 21 O -0.233 6.233 22 C -0.069 4.069 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.046 3.338 7.801 15.563 hybrid contribution -0.499 -0.542 -0.314 0.801 sum -13.545 2.796 7.488 15.727 Atomic orbital electron populations 1.22018 0.98164 1.00297 1.00895 1.21992 0.93174 0.99509 1.01436 1.18353 0.97610 0.90874 0.90568 0.93506 1.20903 0.88069 1.38189 1.07059 0.90503 1.24966 0.94758 0.95626 0.97631 1.69887 1.08682 1.45317 1.29763 0.86893 0.80954 0.79593 0.81156 1.20570 1.18832 1.22455 1.20348 0.91381 0.91221 0.97300 1.20967 1.01360 1.01715 0.90929 1.20903 0.96902 0.94845 0.98258 1.20904 1.06230 1.01131 0.95784 1.19394 0.93154 0.88022 0.93787 1.86136 1.65157 1.40111 1.31137 1.22975 1.00310 0.97997 0.85425 1.17881 1.02003 0.96201 0.83069 1.86105 1.38215 1.64750 1.34228 1.23136 0.85145 0.99993 0.98592 0.93727 0.93180 0.93172 0.92950 0.91891 0.92620 0.85088 0.86265 0.86041 0.92920 0.88795 0.93143 0.92813 0.94410 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 8.63 37.16 0.32 -2.42 16 2 C -0.12 -2.63 4.79 -26.73 -0.13 -2.75 16 3 C 0.04 1.06 1.51 -92.92 -0.14 0.92 16 4 H 0.05 1.17 5.79 -51.93 -0.30 0.87 16 5 C -0.50 -14.17 8.83 -34.44 -0.30 -14.48 16 6 H 0.08 2.36 7.85 -52.49 -0.41 1.94 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.88 21.93 24.41 -169.99 -4.15 17.78 16 10 H -0.28 -6.66 6.83 56.52 0.39 -6.27 16 11 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 12 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 13 C 0.00 -0.04 3.73 -104.50 -0.39 -0.43 16 14 C -0.13 -2.53 8.66 -39.57 -0.34 -2.88 16 15 C -0.09 -1.48 10.04 -39.58 -0.40 -1.87 16 16 C -0.22 -3.51 9.04 -39.46 -0.36 -3.86 16 17 C 0.10 1.84 6.70 -39.12 -0.26 1.58 16 18 O -0.31 -5.14 10.28 -34.21 -0.35 -5.49 16 19 C 0.03 0.31 9.81 101.05 0.99 1.30 16 20 C 0.05 1.09 5.71 -39.12 -0.22 0.87 16 21 O -0.32 -6.62 9.05 -34.20 -0.31 -6.93 16 22 C 0.03 0.43 10.88 101.05 1.10 1.52 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.84 7.31 -51.93 -0.38 0.46 16 25 H 0.05 0.86 6.33 -51.93 -0.33 0.53 16 26 H 0.05 1.18 3.22 -51.93 -0.17 1.02 16 27 H 0.06 1.28 7.21 -51.93 -0.37 0.91 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.13 2.52 7.53 -52.49 -0.40 2.12 16 30 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.12 1.53 6.30 -52.48 -0.33 1.20 16 32 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.48 7.66 -51.92 -0.40 0.08 16 35 H 0.05 0.88 4.74 -51.92 -0.25 0.64 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 292.47 15.07 4.41 4.41 Total: -1.00 -31.93 292.47 -4.89 -36.82 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.03 Total: 0.66 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -0.23 Total: -20.52 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.77 Total: -26.71 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.66 Total: -12.43 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.15 Total: 17.78 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.93 -4.89 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.902 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds