Wall clock time and date at job start Mon Mar 30 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 C 1.50699 * 109.47592 * 64.99619 * 3 2 1 14 14 C 1.38297 * 119.99680 * 59.72279 * 13 3 2 15 15 C 1.38207 * 120.14256 * 179.77498 * 14 13 3 16 16 C 1.38279 * 120.15040 * 0.50081 * 15 14 13 17 17 C 1.38526 * 120.00011 * 359.75209 * 16 15 14 18 18 O 1.35997 * 120.07738 * 180.02562 * 17 16 15 19 19 C 1.42902 * 116.99845 * 359.97438 * 18 17 16 20 20 C 1.38522 * 120.00676 * 240.00158 * 13 3 2 21 21 O 1.35994 * 120.06880 * 359.97438 * 20 13 3 22 22 C 1.42901 * 117.00022 * 90.00144 * 21 20 13 23 23 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 25 25 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 26 26 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 27 27 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 29 29 H 1.07997 * 119.92689 * 0.02562 * 14 13 3 30 30 H 1.08001 * 119.92525 * 180.23444 * 15 14 13 31 31 H 1.08003 * 120.00422 * 179.72689 * 16 15 14 32 32 H 1.09007 * 109.47105 * 59.99301 * 19 18 17 33 33 H 1.08992 * 109.47258 * 179.97438 * 19 18 17 34 34 H 1.09007 * 109.47102 * 299.99846 * 19 18 17 35 35 H 1.09007 * 109.47279 * 300.00156 * 22 21 20 36 36 H 1.09002 * 109.47449 * 59.99880 * 22 21 20 37 37 H 1.09000 * 109.47259 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 6 1.6412 2.1164 1.2876 14 6 2.0720 1.6047 2.4980 15 6 1.7120 2.2230 3.6805 16 6 0.9109 3.3499 3.6591 17 6 0.4715 3.8645 2.4504 18 8 -0.3160 4.9730 2.4275 19 6 -0.6525 5.5559 3.6881 20 6 0.8383 3.2449 1.2592 21 8 0.4096 3.7463 0.0700 22 6 -0.8320 3.2494 -0.4338 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.8771 0.4812 -2.1123 29 1 2.6945 0.7224 2.5191 30 1 2.0536 1.8226 4.6236 31 1 0.6273 3.8286 4.5848 32 1 0.2594 5.8549 4.2052 33 1 -1.2822 6.4308 3.5274 34 1 -1.1909 4.8265 4.2935 35 1 -0.7598 2.1715 -0.5793 36 1 -1.6269 3.4672 0.2796 37 1 -1.0562 3.7300 -1.3860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084400306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:09 Heat of formation + Delta-G solvation = -70.570582 kcal Electronic energy + Delta-G solvation = -19189.136587 eV Core-core repulsion = 16317.647746 eV Total energy + Delta-G solvation = -2871.488841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.51466 -39.32161 -38.07782 -36.45699 -34.05773 -31.52192 -30.82425 -29.10627 -28.16954 -27.54665 -24.88718 -23.62971 -22.98828 -21.19255 -18.97171 -18.81993 -17.98959 -17.39865 -16.98543 -16.72509 -16.01788 -15.85655 -15.44257 -15.24407 -15.00098 -14.62784 -14.28393 -13.80956 -13.54722 -13.35984 -13.09452 -12.86035 -12.63290 -12.54716 -12.34700 -12.12234 -11.97396 -11.82159 -11.56544 -11.22457 -11.06838 -10.75483 -10.60834 -9.42032 -9.00702 -8.28594 -6.31578 0.34958 0.53042 1.28531 1.36016 1.46240 2.32762 2.37567 2.66457 3.06175 3.08900 3.92868 4.07611 4.20115 4.26514 4.39031 4.43177 4.44626 4.47844 4.49925 4.51449 4.60574 4.68423 4.71319 4.75325 4.85796 5.03839 5.15334 5.19567 5.24687 5.33572 5.44408 5.60178 5.66720 5.84005 5.91392 6.30463 6.32810 6.72142 6.81506 7.31720 8.87928 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026924 B = 0.007800 C = 0.007225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.711771 B = 3589.018984 C = 3874.389741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.052 3.948 4 H 0.030 0.970 5 C -0.506 4.506 6 H 0.032 0.968 7 C 0.014 3.986 8 N -0.948 5.948 9 Si 0.945 3.055 10 H -0.260 1.260 11 H -0.248 1.248 12 H -0.300 1.300 13 C -0.032 4.032 14 C -0.150 4.150 15 C -0.081 4.081 16 C -0.208 4.208 17 C 0.099 3.901 18 O -0.331 6.331 19 C 0.017 3.983 20 C 0.030 3.970 21 O -0.346 6.346 22 C 0.021 3.979 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.265 0.735 29 H 0.119 0.881 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.982 3.233 9.642 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C 0.033 3.967 4 H 0.048 0.952 5 C -0.544 4.544 6 H 0.051 0.949 7 C -0.183 4.183 8 N -0.589 5.589 9 Si 0.772 3.228 10 H -0.186 1.186 11 H -0.172 1.172 12 H -0.228 1.228 13 C -0.032 4.032 14 C -0.169 4.169 15 C -0.098 4.098 16 C -0.227 4.227 17 C 0.053 3.947 18 O -0.245 6.245 19 C -0.077 4.077 20 C -0.014 4.014 21 O -0.263 6.263 22 C -0.072 4.072 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.137 0.863 30 H 0.174 0.826 31 H 0.180 0.820 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.856 3.435 9.273 18.687 hybrid contribution 0.356 -0.414 -0.607 0.816 sum -15.499 3.021 8.666 18.013 Atomic orbital electron populations 1.21923 0.94925 1.02204 1.01408 1.21886 0.96078 0.97311 1.00768 1.18125 0.94151 0.92725 0.91713 0.95150 1.21173 0.90704 1.36848 1.05682 0.94918 1.25818 0.95850 0.96394 1.00246 1.70040 1.10711 1.47236 1.30881 0.85891 0.79658 0.79696 0.77555 1.18619 1.17211 1.22767 1.20196 0.93599 0.92606 0.96820 1.20995 1.02059 1.02078 0.91724 1.21260 0.95748 0.94380 0.98459 1.21338 1.04479 1.00290 0.96544 1.19451 0.93234 0.88445 0.93579 1.86111 1.64603 1.39415 1.34393 1.23370 1.01453 0.99133 0.83791 1.18068 1.02822 0.96481 0.84013 1.86030 1.40063 1.65372 1.34863 1.23324 0.84085 1.00093 0.99727 0.91037 0.92604 0.92797 0.94288 0.91805 0.92560 0.86285 0.82584 0.81993 0.91924 0.86408 0.91178 0.92941 0.92986 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 8.63 71.98 0.62 -4.23 16 2 C -0.12 -5.16 4.79 30.59 0.15 -5.01 16 3 C 0.05 2.50 1.51 -12.29 -0.02 2.48 16 4 H 0.03 1.55 5.79 -2.39 -0.01 1.54 16 5 C -0.51 -29.78 8.83 25.60 0.23 -29.55 16 6 H 0.03 2.14 7.85 -2.91 -0.02 2.12 16 7 C 0.01 0.82 5.45 84.66 0.46 1.28 16 8 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 9 Si 0.95 45.96 24.41 68.60 1.67 47.63 16 10 H -0.26 -11.80 6.83 99.48 0.68 -11.12 16 11 H -0.25 -11.33 6.53 99.48 0.65 -10.68 16 12 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 13 C -0.03 -1.37 3.73 -19.78 -0.07 -1.44 16 14 C -0.15 -5.78 8.66 22.28 0.19 -5.59 16 15 C -0.08 -2.42 10.04 22.27 0.22 -2.19 16 16 C -0.21 -5.88 9.04 22.35 0.20 -5.67 16 17 C 0.10 3.39 6.70 22.57 0.15 3.54 16 18 O -0.33 -10.10 10.28 -79.67 -0.82 -10.92 16 19 C 0.02 0.30 9.81 113.37 1.11 1.41 16 20 C 0.03 1.24 5.71 22.57 0.13 1.37 16 21 O -0.35 -14.47 9.05 -79.64 -0.72 -15.19 16 22 C 0.02 0.68 10.88 113.37 1.23 1.92 16 23 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.05 1.77 7.31 -2.39 -0.02 1.75 16 25 H 0.05 1.72 6.33 -2.39 -0.02 1.71 16 26 H 0.04 1.72 3.22 -2.39 -0.01 1.71 16 27 H 0.06 2.60 7.21 -2.39 -0.02 2.59 16 28 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 29 H 0.12 4.72 7.53 -2.91 -0.02 4.70 16 30 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 31 H 0.16 3.21 6.30 -2.91 -0.02 3.19 16 32 H 0.06 1.02 7.66 -2.38 -0.02 1.00 16 33 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.01 7.66 -2.38 -0.02 0.99 16 35 H 0.05 1.66 4.74 -2.38 -0.01 1.65 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -72.93 292.47 6.02 -66.91 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.98 Total: 13.49 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 4.61 Total: -41.70 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.30 Total: -60.22 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -1.54 Total: -26.11 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.67 Total: 47.63 kcal Total: -72.93 6.02 -66.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.662 kcal (2) G-P(sol) polarization free energy of solvation -72.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds