Wall clock time and date at job start Mon Mar 30 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 H 1.08998 * 109.47659 * 305.66311 * 3 2 1 5 5 C 1.50701 * 109.47022 * 65.66172 * 3 2 1 6 6 H 1.08005 * 120.00025 * 56.61485 * 5 3 2 7 7 C 1.37874 * 120.00106 * 236.62272 * 5 3 2 8 8 N 1.31521 * 119.99961 * 188.03457 * 7 5 3 9 9 Si 1.86803 * 120.00158 * 8.02473 * 7 5 3 10 10 H 1.48495 * 109.47221 * 274.52275 * 9 7 5 11 11 H 1.48500 * 109.46631 * 34.51713 * 9 7 5 12 12 H 1.48494 * 109.46983 * 154.51814 * 9 7 5 13 13 C 1.50698 * 109.47168 * 185.65597 * 3 2 1 14 14 C 1.38146 * 120.00441 * 300.00481 * 13 3 2 15 15 C 1.38680 * 120.00079 * 179.97438 * 14 13 3 16 16 O 1.35985 * 119.99566 * 180.02562 * 15 14 13 17 17 C 1.42906 * 116.99671 * 180.02562 * 16 15 14 18 18 C 1.38712 * 120.00182 * 0.02562 * 15 14 13 19 19 C 1.38115 * 119.99808 * 0.02562 * 18 15 14 20 20 C 1.38678 * 119.99682 * 119.72626 * 13 3 2 21 21 O 1.35987 * 120.00121 * 0.02562 * 20 13 3 22 22 C 1.42899 * 117.00076 * 179.97438 * 21 20 13 23 23 H 1.09000 * 109.47609 * 182.05328 * 1 2 3 24 24 H 1.09003 * 109.47291 * 302.05122 * 1 2 3 25 25 H 1.08997 * 109.48023 * 62.04930 * 1 2 3 26 26 H 1.09005 * 109.47012 * 240.00579 * 2 1 3 27 27 H 1.09002 * 109.47710 * 120.00424 * 2 1 3 28 28 H 0.97004 * 119.99659 * 179.97438 * 8 7 5 29 29 H 1.08005 * 119.99912 * 359.97438 * 14 13 3 30 30 H 1.09003 * 109.46782 * 300.00264 * 17 16 15 31 31 H 1.08999 * 109.47133 * 59.99652 * 17 16 15 32 32 H 1.08996 * 109.47157 * 180.02562 * 17 16 15 33 33 H 1.08004 * 120.00493 * 180.02562 * 18 15 14 34 34 H 1.08005 * 119.99982 * 179.97438 * 19 18 15 35 35 H 1.09003 * 109.47089 * 300.00244 * 22 21 20 36 36 H 1.09001 * 109.47261 * 60.00252 * 22 21 20 37 37 H 1.08998 * 109.47102 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5962 1.9848 -0.8349 5 6 1.6553 2.1113 1.2946 6 1 1.9600 1.6798 2.2366 7 6 0.9144 3.2738 1.2764 8 7 0.7128 3.9427 2.3907 9 14 0.1970 3.8992 -0.3311 10 1 1.2132 4.7159 -1.0421 11 1 -0.1936 2.7456 -1.1807 12 1 -0.9987 4.7331 -0.0483 13 6 3.5404 1.4448 -0.1400 14 6 4.3236 0.8139 0.8071 15 6 5.7044 0.8156 0.6779 16 8 6.4752 0.1941 1.6100 17 6 7.8901 0.2359 1.4141 18 6 6.2991 1.4513 -0.4021 19 6 5.5162 2.0830 -1.3484 20 6 4.1347 2.0754 -1.2228 21 8 3.3636 2.6920 -2.1579 22 6 4.0427 3.3218 -3.2461 23 1 -0.3634 -1.0270 0.0368 24 1 -0.3634 0.5454 0.8710 25 1 -0.3635 0.4816 -0.9077 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.1917 4.7608 2.3778 29 1 3.8605 0.3193 1.6482 30 1 8.1396 -0.2377 0.4645 31 1 8.2247 1.2732 1.4016 32 1 8.3852 -0.2963 2.2263 33 1 7.3744 1.4523 -0.5030 34 1 5.9793 2.5783 -2.1891 35 1 4.7090 4.0936 -2.8607 36 1 4.6245 2.5781 -3.7905 37 1 3.3125 3.7745 -3.9168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084400309.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:11 Heat of formation + Delta-G solvation = -60.229968 kcal Electronic energy + Delta-G solvation = -18874.259564 eV Core-core repulsion = 16003.219126 eV Total energy + Delta-G solvation = -2871.040439 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.97746 -38.49663 -36.35155 -34.57062 -31.84265 -30.44255 -29.33244 -27.37611 -26.57480 -26.39872 -23.56062 -21.98520 -21.05849 -19.25003 -17.51055 -17.10973 -17.00501 -15.99402 -15.44830 -15.13823 -14.37593 -14.33951 -13.83446 -13.45796 -13.13317 -12.91980 -12.58767 -12.41571 -12.29687 -11.94127 -11.59112 -11.30797 -11.18874 -11.10692 -10.77558 -10.69898 -10.43947 -10.06556 -9.85194 -9.62060 -9.47375 -8.91428 -8.46948 -8.04591 -7.10898 -6.03581 -4.00770 1.92874 2.09248 3.39178 3.44497 3.50300 3.66774 3.89609 4.37379 4.50574 5.11399 5.21032 5.27873 5.30527 5.35407 5.40466 5.42992 5.56922 5.68603 5.73245 5.99083 6.12672 6.13666 6.28107 6.39484 6.51135 6.64352 6.77636 6.84948 6.85324 7.01483 7.19053 7.29250 7.35618 7.51490 7.78035 7.82509 8.07549 8.55887 9.02157 9.60345 11.08818 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019365 B = 0.008620 C = 0.007471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.595111 B = 3247.639533 C = 3747.078102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C 0.043 3.957 4 H 0.057 0.943 5 C -0.497 4.497 6 H 0.076 0.924 7 C 0.075 3.925 8 N -0.897 5.897 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.260 1.260 12 H -0.294 1.294 13 C -0.019 4.019 14 C -0.102 4.102 15 C 0.087 3.913 16 O -0.320 6.320 17 C 0.032 3.968 18 C -0.198 4.198 19 C -0.173 4.173 20 C 0.077 3.923 21 O -0.310 6.310 22 C 0.030 3.970 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.053 0.947 28 H 0.263 0.737 29 H 0.135 0.865 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.254 -4.838 -8.475 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C 0.024 3.976 4 H 0.075 0.925 5 C -0.534 4.534 6 H 0.094 0.906 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.185 1.185 12 H -0.221 1.221 13 C -0.020 4.020 14 C -0.121 4.121 15 C 0.043 3.957 16 O -0.234 6.234 17 C -0.064 4.064 18 C -0.216 4.216 19 C -0.192 4.192 20 C 0.032 3.968 21 O -0.224 6.224 22 C -0.066 4.066 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.888 -4.751 -8.223 13.710 hybrid contribution 0.279 0.819 -1.069 1.376 sum 10.167 -3.932 -9.292 14.324 Atomic orbital electron populations 1.21691 0.96654 0.99248 1.02296 1.21555 0.95547 0.97901 0.99132 1.18340 0.86081 0.94215 0.98960 0.92506 1.20869 1.33051 1.08054 0.91430 0.90588 1.25058 0.95856 0.95839 0.95945 1.69931 1.40084 1.16408 1.26999 0.86919 0.78907 0.79292 0.84890 1.19865 1.18522 1.22106 1.19893 0.99126 0.93407 0.89564 1.20094 0.89083 1.02591 1.00306 1.18935 0.91070 0.96176 0.89511 1.86070 1.17712 1.72577 1.47081 1.22908 0.79928 1.01509 1.02055 1.20691 0.99131 1.04989 0.96832 1.20810 0.92477 1.04772 1.01182 1.18823 0.89042 0.97702 0.91184 1.86150 1.34481 1.68199 1.33591 1.22921 0.98462 0.96629 0.88602 0.94804 0.91114 0.94108 0.94965 0.92851 0.92733 0.84710 0.93319 0.93181 0.88930 0.86352 0.86257 0.93283 0.93356 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.77 37.15 0.36 -2.50 16 2 C -0.10 -2.18 5.12 -26.73 -0.14 -2.32 16 3 C 0.04 1.03 1.89 -92.92 -0.18 0.86 16 4 H 0.06 1.42 3.57 -51.93 -0.19 1.24 16 5 C -0.50 -13.77 7.45 -34.44 -0.26 -14.03 16 6 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 7 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 8 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 9 Si 0.87 22.17 27.00 -169.99 -4.59 17.58 16 10 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.26 -6.32 6.30 56.52 0.36 -5.97 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 13 C -0.02 -0.42 4.78 -104.49 -0.50 -0.92 16 14 C -0.10 -2.16 8.81 -39.45 -0.35 -2.51 16 15 C 0.09 1.64 6.68 -39.24 -0.26 1.37 16 16 O -0.32 -5.45 10.50 -19.69 -0.21 -5.65 16 17 C 0.03 0.37 9.81 101.05 0.99 1.36 16 18 C -0.20 -3.31 9.03 -39.45 -0.36 -3.67 16 19 C -0.17 -3.02 9.03 -39.45 -0.36 -3.38 16 20 C 0.08 1.58 6.66 -39.24 -0.26 1.32 16 21 O -0.31 -6.24 9.26 -19.70 -0.18 -6.43 16 22 C 0.03 0.42 9.81 101.05 0.99 1.41 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.57 7.34 -51.93 -0.38 1.19 16 25 H 0.04 0.81 7.71 -51.93 -0.40 0.41 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 1.10 7.59 -51.93 -0.39 0.70 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.14 2.87 7.65 -52.48 -0.40 2.47 16 30 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.12 1.60 6.29 -52.48 -0.33 1.27 16 34 H 0.12 1.70 6.29 -52.48 -0.33 1.37 16 35 H 0.05 0.64 7.65 -51.93 -0.40 0.25 16 36 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 301.57 15.07 4.54 4.54 Total: -1.00 -31.85 301.57 -5.37 -37.22 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.31 Total: 0.36 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -0.40 Total: -20.93 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.39 Total: -12.08 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.59 Total: 17.58 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.85 -5.37 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400309.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.011 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds