Wall clock time and date at job start Mon Mar 30 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 H 1.08998 * 109.47659 * 305.66311 * 3 2 1 5 5 C 1.50701 * 109.47022 * 65.66172 * 3 2 1 6 6 H 1.08005 * 120.00025 * 56.61485 * 5 3 2 7 7 C 1.37874 * 120.00106 * 236.62272 * 5 3 2 8 8 N 1.31521 * 119.99961 * 188.03457 * 7 5 3 9 9 Si 1.86803 * 120.00158 * 8.02473 * 7 5 3 10 10 H 1.48495 * 109.47221 * 274.52275 * 9 7 5 11 11 H 1.48500 * 109.46631 * 34.51713 * 9 7 5 12 12 H 1.48494 * 109.46983 * 154.51814 * 9 7 5 13 13 C 1.50698 * 109.47168 * 185.65597 * 3 2 1 14 14 C 1.38146 * 120.00441 * 300.00481 * 13 3 2 15 15 C 1.38680 * 120.00079 * 179.97438 * 14 13 3 16 16 O 1.35985 * 119.99566 * 180.02562 * 15 14 13 17 17 C 1.42906 * 116.99671 * 180.02562 * 16 15 14 18 18 C 1.38712 * 120.00182 * 0.02562 * 15 14 13 19 19 C 1.38115 * 119.99808 * 0.02562 * 18 15 14 20 20 C 1.38678 * 119.99682 * 119.72626 * 13 3 2 21 21 O 1.35987 * 120.00121 * 0.02562 * 20 13 3 22 22 C 1.42899 * 117.00076 * 179.97438 * 21 20 13 23 23 H 1.09000 * 109.47609 * 182.05328 * 1 2 3 24 24 H 1.09003 * 109.47291 * 302.05122 * 1 2 3 25 25 H 1.08997 * 109.48023 * 62.04930 * 1 2 3 26 26 H 1.09005 * 109.47012 * 240.00579 * 2 1 3 27 27 H 1.09002 * 109.47710 * 120.00424 * 2 1 3 28 28 H 0.97004 * 119.99659 * 179.97438 * 8 7 5 29 29 H 1.08005 * 119.99912 * 359.97438 * 14 13 3 30 30 H 1.09003 * 109.46782 * 300.00264 * 17 16 15 31 31 H 1.08999 * 109.47133 * 59.99652 * 17 16 15 32 32 H 1.08996 * 109.47157 * 180.02562 * 17 16 15 33 33 H 1.08004 * 120.00493 * 180.02562 * 18 15 14 34 34 H 1.08005 * 119.99982 * 179.97438 * 19 18 15 35 35 H 1.09003 * 109.47089 * 300.00244 * 22 21 20 36 36 H 1.09001 * 109.47261 * 60.00252 * 22 21 20 37 37 H 1.08998 * 109.47102 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5962 1.9848 -0.8349 5 6 1.6553 2.1113 1.2946 6 1 1.9600 1.6798 2.2366 7 6 0.9144 3.2738 1.2764 8 7 0.7128 3.9427 2.3907 9 14 0.1970 3.8992 -0.3311 10 1 1.2132 4.7159 -1.0421 11 1 -0.1936 2.7456 -1.1807 12 1 -0.9987 4.7331 -0.0483 13 6 3.5404 1.4448 -0.1400 14 6 4.3236 0.8139 0.8071 15 6 5.7044 0.8156 0.6779 16 8 6.4752 0.1941 1.6100 17 6 7.8901 0.2359 1.4141 18 6 6.2991 1.4513 -0.4021 19 6 5.5162 2.0830 -1.3484 20 6 4.1347 2.0754 -1.2228 21 8 3.3636 2.6920 -2.1579 22 6 4.0427 3.3218 -3.2461 23 1 -0.3634 -1.0270 0.0368 24 1 -0.3634 0.5454 0.8710 25 1 -0.3635 0.4816 -0.9077 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.1917 4.7608 2.3778 29 1 3.8605 0.3193 1.6482 30 1 8.1396 -0.2377 0.4645 31 1 8.2247 1.2732 1.4016 32 1 8.3852 -0.2963 2.2263 33 1 7.3744 1.4523 -0.5030 34 1 5.9793 2.5783 -2.1891 35 1 4.7090 4.0936 -2.8607 36 1 4.6245 2.5781 -3.7905 37 1 3.3125 3.7745 -3.9168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084400309.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:11 Heat of formation + Delta-G solvation = -80.710857 kcal Electronic energy + Delta-G solvation = -18875.147682 eV Core-core repulsion = 16003.219126 eV Total energy + Delta-G solvation = -2871.928557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.38237 -39.80062 -37.88700 -36.19641 -33.95918 -31.94419 -30.67813 -28.87004 -27.93749 -27.64785 -25.43655 -23.46977 -22.48468 -20.98269 -19.16689 -18.87501 -18.34773 -17.44415 -16.67756 -16.35185 -16.25072 -15.60238 -15.34826 -15.13487 -14.80806 -14.71940 -14.22822 -13.69029 -13.59008 -13.33740 -13.21620 -12.89784 -12.69204 -12.49283 -12.39788 -12.20622 -12.11296 -11.71919 -11.57879 -11.21783 -11.15731 -10.85227 -10.64743 -9.60356 -8.52850 -8.25767 -6.25205 0.46185 0.63166 1.35305 1.38465 1.48002 2.38787 2.46872 2.63260 2.87191 3.15645 3.88467 3.93014 4.23311 4.32228 4.40899 4.43159 4.44218 4.46425 4.51815 4.62512 4.69239 4.72351 4.75284 4.81031 4.94115 5.10356 5.16812 5.29871 5.37497 5.40060 5.48677 5.59276 5.66082 5.76093 5.87541 6.38443 6.50568 6.71576 6.79374 7.38398 8.90826 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.019365 B = 0.008620 C = 0.007471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.595111 B = 3247.639533 C = 3747.078102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 C 0.045 3.955 4 H 0.049 0.951 5 C -0.486 4.486 6 H 0.034 0.966 7 C 0.019 3.981 8 N -0.948 5.948 9 Si 0.929 3.071 10 H -0.270 1.270 11 H -0.243 1.243 12 H -0.292 1.292 13 C -0.055 4.055 14 C -0.125 4.125 15 C 0.083 3.917 16 O -0.342 6.342 17 C 0.019 3.981 18 C -0.183 4.183 19 C -0.163 4.163 20 C 0.062 3.938 21 O -0.342 6.342 22 C 0.017 3.983 23 H 0.066 0.934 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.263 0.737 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.463 -5.186 -11.283 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 C 0.026 3.974 4 H 0.067 0.933 5 C -0.524 4.524 6 H 0.053 0.947 7 C -0.178 4.178 8 N -0.589 5.589 9 Si 0.755 3.245 10 H -0.196 1.196 11 H -0.167 1.167 12 H -0.219 1.219 13 C -0.056 4.056 14 C -0.144 4.144 15 C 0.039 3.961 16 O -0.257 6.257 17 C -0.075 4.075 18 C -0.202 4.202 19 C -0.182 4.182 20 C 0.018 3.982 21 O -0.257 6.257 22 C -0.077 4.077 23 H 0.085 0.915 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.178 0.822 34 H 0.176 0.824 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.117 -5.122 -11.049 17.180 hybrid contribution -0.206 0.837 -0.166 0.878 sum 11.912 -4.285 -11.216 16.913 Atomic orbital electron populations 1.21653 0.95924 1.00979 1.01007 1.21495 0.96166 0.96375 0.99854 1.18228 0.87974 0.95133 0.96061 0.93252 1.21026 1.31851 1.07668 0.91879 0.94730 1.25806 0.96629 0.96347 0.99029 1.70068 1.42092 1.17408 1.29295 0.85997 0.78112 0.79191 0.81214 1.19584 1.16678 1.21912 1.19729 0.98014 0.96112 0.91746 1.20006 0.90823 1.03672 0.99918 1.18964 0.90428 0.96280 0.90461 1.86050 1.20408 1.72259 1.46956 1.23313 0.76963 1.02929 1.04285 1.21145 1.01182 1.02712 0.95123 1.21223 0.91159 1.03720 1.02075 1.18937 0.90421 0.97767 0.91085 1.86088 1.36246 1.68570 1.34763 1.23298 0.99483 0.97431 0.87511 0.91517 0.93952 0.93813 0.92863 0.93389 0.92800 0.86963 0.91332 0.92081 0.86525 0.82210 0.82375 0.92259 0.90767 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 9.77 71.98 0.70 -4.84 16 2 C -0.10 -4.30 5.12 30.59 0.16 -4.15 16 3 C 0.04 2.20 1.89 -12.29 -0.02 2.17 16 4 H 0.05 2.47 3.57 -2.39 -0.01 2.46 16 5 C -0.49 -28.31 7.45 25.60 0.19 -28.12 16 6 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 7 C 0.02 1.12 5.47 84.65 0.46 1.58 16 8 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 9 Si 0.93 46.58 27.00 68.60 1.85 48.44 16 10 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.24 -11.33 6.30 99.48 0.63 -10.71 16 12 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 13 C -0.05 -2.49 4.78 -19.78 -0.09 -2.58 16 14 C -0.13 -5.44 8.81 22.35 0.20 -5.24 16 15 C 0.08 3.03 6.68 22.49 0.15 3.18 16 16 O -0.34 -11.16 10.50 -93.38 -0.98 -12.14 16 17 C 0.02 0.38 9.81 113.37 1.11 1.50 16 18 C -0.18 -5.48 9.03 22.35 0.20 -5.28 16 19 C -0.16 -5.09 9.03 22.36 0.20 -4.89 16 20 C 0.06 2.47 6.66 22.49 0.15 2.62 16 21 O -0.34 -13.07 9.26 -93.41 -0.86 -13.93 16 22 C 0.02 0.42 9.81 113.37 1.11 1.54 16 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.04 1.91 7.34 -2.39 -0.02 1.89 16 25 H 0.04 1.69 7.71 -2.39 -0.02 1.68 16 26 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.05 2.05 7.59 -2.39 -0.02 2.03 16 28 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 29 H 0.11 5.17 7.65 -2.91 -0.02 5.15 16 30 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 31 H 0.06 1.09 7.66 -2.39 -0.02 1.08 16 32 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.16 3.41 6.29 -2.91 -0.02 3.39 16 34 H 0.16 3.63 6.29 -2.91 -0.02 3.61 16 35 H 0.06 1.33 7.65 -2.39 -0.02 1.31 16 36 H 0.07 1.44 7.67 -2.39 -0.02 1.42 16 37 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -72.85 301.57 5.80 -67.05 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.97 Total: 13.56 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 4.52 Total: -42.52 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.30 Total: -60.46 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -1.85 Total: -26.07 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.85 Total: 48.44 kcal Total: -72.85 5.80 -67.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400309.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.659 kcal (2) G-P(sol) polarization free energy of solvation -72.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds