Wall clock time and date at job start Mon Mar 30 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52989 * 109.47473 * 2 1 4 4 H 1.09004 * 109.47149 * 305.62884 * 3 2 1 5 5 C 1.50701 * 109.47219 * 65.63010 * 3 2 1 6 6 H 1.07997 * 120.00143 * 28.16167 * 5 3 2 7 7 C 1.37880 * 120.00058 * 208.16810 * 5 3 2 8 8 N 1.31512 * 119.99903 * 6.19424 * 7 5 3 9 9 Si 1.86804 * 119.99958 * 186.19979 * 7 5 3 10 10 H 1.48501 * 109.47150 * 89.99794 * 9 7 5 11 11 H 1.48501 * 109.47028 * 209.99986 * 9 7 5 12 12 H 1.48504 * 109.46764 * 329.99383 * 9 7 5 13 13 C 1.50699 * 109.47621 * 185.63081 * 3 2 1 14 14 C 1.38251 * 119.92444 * 300.00194 * 13 3 2 15 15 C 1.38242 * 120.14763 * 180.02562 * 14 13 3 16 16 C 1.38565 * 119.99943 * 359.97438 * 15 14 13 17 17 O 1.35991 * 120.07481 * 179.97438 * 16 15 14 18 18 C 1.42901 * 116.99695 * 0.02562 * 17 16 15 19 19 C 1.39156 * 119.85352 * 359.97438 * 16 15 14 20 20 O 1.35993 * 120.07292 * 180.02562 * 19 16 15 21 21 C 1.42901 * 116.99670 * 180.02562 * 20 19 16 22 22 C 1.38238 * 119.93007 * 120.24999 * 13 3 2 23 23 H 1.08997 * 109.47395 * 294.08739 * 1 2 3 24 24 H 1.08996 * 109.47201 * 54.08662 * 1 2 3 25 25 H 1.09005 * 109.47806 * 174.08845 * 1 2 3 26 26 H 1.09002 * 109.47061 * 239.99525 * 2 1 3 27 27 H 1.09006 * 109.46950 * 120.00389 * 2 1 3 28 28 H 0.97007 * 119.99953 * 180.02562 * 8 7 5 29 29 H 1.08004 * 119.92680 * 359.97438 * 14 13 3 30 30 H 1.07997 * 120.00023 * 179.97438 * 15 14 13 31 31 H 1.09002 * 109.47018 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47931 * 300.00308 * 18 17 16 33 33 H 1.09000 * 109.46910 * 60.00522 * 18 17 16 34 34 H 1.09004 * 109.46547 * 180.02562 * 21 20 19 35 35 H 1.08993 * 109.47622 * 60.00298 * 21 20 19 36 36 H 1.09003 * 109.47079 * 299.99736 * 21 20 19 37 37 H 1.08002 * 120.00095 * 0.02562 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5967 1.9845 -0.8353 5 6 1.6548 2.1114 1.2942 6 1 1.5297 1.5220 2.1905 7 6 1.4618 3.4761 1.3341 8 7 1.4938 4.1774 0.2220 9 14 1.1552 4.3287 2.9676 10 1 2.4519 4.7448 3.5599 11 1 0.3040 5.5258 2.7491 12 1 0.4659 3.3934 3.8924 13 6 3.5406 1.4447 -0.1394 14 6 4.3224 0.8130 0.8098 15 6 5.6993 0.8127 0.6868 16 6 6.2988 1.4461 -0.3900 17 8 7.6532 1.4472 -0.5123 18 6 8.3970 0.7754 0.5062 19 6 5.5118 2.0810 -1.3460 20 8 6.0954 2.7035 -2.4049 21 6 5.2253 3.3348 -3.3465 22 6 4.1325 2.0828 -1.2134 23 1 -0.3634 0.4194 0.9381 24 1 -0.3633 0.6028 -0.8323 25 1 -0.3635 -1.0222 -0.1058 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.3584 5.1376 0.2501 29 1 3.8564 0.3193 1.6499 30 1 6.3077 0.3189 1.4299 31 1 9.4623 0.8521 0.2885 32 1 8.1898 1.2366 1.4718 33 1 8.1065 -0.2748 0.5354 34 1 5.8179 3.7916 -4.1392 35 1 4.6395 4.1029 -2.8417 36 1 4.5550 2.5909 -3.7771 37 1 3.5197 2.5794 -1.9512 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084400313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:16 Heat of formation + Delta-G solvation = -65.227406 kcal Electronic energy + Delta-G solvation = -18675.262370 eV Core-core repulsion = 15804.005226 eV Total energy + Delta-G solvation = -2871.257144 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.84918 -37.85901 -36.88977 -34.18542 -31.82909 -29.71916 -29.57126 -27.33277 -26.81352 -25.66799 -23.62190 -21.66060 -21.04300 -19.48148 -17.79448 -16.82300 -16.14425 -15.62724 -15.52004 -14.77402 -14.55071 -14.15310 -13.86691 -13.75269 -13.36590 -12.70498 -12.51131 -12.07396 -11.87593 -11.70910 -11.24525 -11.09786 -11.06407 -10.92826 -10.71798 -10.50782 -10.47100 -10.36171 -10.08607 -9.77391 -9.20444 -8.98864 -8.47875 -7.82577 -6.93944 -6.06752 -4.08187 2.14172 2.34627 3.28796 3.35888 3.37620 3.80236 3.86686 4.39634 4.63051 5.26240 5.31340 5.42083 5.47076 5.57024 5.64882 5.70268 5.80396 5.92286 5.94550 6.13073 6.18062 6.22254 6.37407 6.41361 6.53747 6.76207 6.92623 7.02482 7.10307 7.20250 7.35870 7.48654 7.61726 7.63348 7.80971 7.97598 8.23819 8.37093 8.97204 9.54287 11.01597 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.007273 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.199267 B = 3848.689173 C = 3897.905606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C 0.065 3.935 4 H 0.062 0.938 5 C -0.502 4.502 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C -0.014 4.014 14 C -0.114 4.114 15 C -0.177 4.177 16 C 0.059 3.941 17 O -0.316 6.316 18 C 0.032 3.968 19 C 0.090 3.910 20 O -0.317 6.317 21 C 0.030 3.970 22 C -0.167 4.167 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.028 0.972 26 H 0.033 0.967 27 H 0.046 0.954 28 H 0.261 0.739 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.912 -5.327 -2.484 9.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.143 4.143 3 C 0.047 3.953 4 H 0.080 0.920 5 C -0.540 4.540 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.015 4.015 14 C -0.132 4.132 15 C -0.195 4.195 16 C 0.014 3.986 17 O -0.231 6.231 18 C -0.064 4.064 19 C 0.045 3.955 20 O -0.232 6.232 21 C -0.066 4.066 22 C -0.185 4.185 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.193 -5.028 -2.752 9.198 hybrid contribution -0.310 0.686 1.177 1.397 sum 6.884 -4.342 -1.574 8.290 Atomic orbital electron populations 1.21591 0.96664 0.98453 1.02362 1.21528 0.95372 0.98523 0.98921 1.18068 0.86025 0.91736 0.99482 0.92027 1.20970 1.46330 0.92044 0.94607 0.92496 1.24963 0.94725 0.97752 0.96053 1.69910 1.49331 1.06957 1.26048 0.86684 0.78169 0.79268 0.84475 1.20660 1.21293 1.19828 1.20547 0.99257 0.91265 0.90424 1.20686 0.91643 1.01338 0.99548 1.20915 0.96212 1.04438 0.97980 1.18010 0.81803 1.02824 0.95914 1.86080 1.15460 1.73527 1.48044 1.22886 0.95811 0.96415 0.91281 1.18267 0.90790 0.97807 0.88630 1.86048 1.35344 1.68184 1.33599 1.22950 0.94989 0.97115 0.91524 1.21062 0.91168 1.04658 1.01655 0.92122 0.93541 0.95282 0.94862 0.93554 0.92940 0.86280 0.86171 0.89184 0.93278 0.93344 0.89192 0.92476 0.93097 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.64 37.16 0.36 -2.17 16 2 C -0.11 -2.14 5.11 -26.74 -0.14 -2.28 16 3 C 0.07 1.55 2.01 -92.93 -0.19 1.36 16 4 H 0.06 1.61 7.16 -51.93 -0.37 1.23 16 5 C -0.50 -13.00 7.04 -34.44 -0.24 -13.24 16 6 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 7 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 8 N -0.89 -24.66 12.87 55.43 0.71 -23.95 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C -0.01 -0.32 4.77 -104.62 -0.50 -0.82 16 14 C -0.11 -2.37 8.86 -39.58 -0.35 -2.72 16 15 C -0.18 -3.36 9.04 -39.46 -0.36 -3.71 16 16 C 0.06 1.19 6.70 -39.12 -0.26 0.92 16 17 O -0.32 -5.85 10.28 -34.22 -0.35 -6.20 16 18 C 0.03 0.41 9.81 101.05 0.99 1.41 16 19 C 0.09 1.90 6.70 -39.12 -0.26 1.64 16 20 O -0.32 -6.26 10.28 -34.22 -0.35 -6.62 16 21 C 0.03 0.46 9.81 101.05 0.99 1.45 16 22 C -0.17 -3.66 8.66 -39.46 -0.34 -4.01 16 23 H 0.06 1.21 7.59 -51.93 -0.39 0.82 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.91 7.58 -51.93 -0.39 0.51 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.12 2.37 7.63 -52.48 -0.40 1.96 16 30 H 0.12 1.89 6.30 -52.49 -0.33 1.56 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 33 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.92 7.65 -51.93 -0.40 0.53 16 36 H 0.05 0.74 7.68 -51.93 -0.40 0.34 16 37 H 0.13 2.79 6.18 -52.49 -0.32 2.47 16 LS Contribution 307.84 15.07 4.64 4.64 Total: -1.00 -29.61 307.84 -6.23 -35.84 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.47 Total: 0.74 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -0.39 Total: -20.45 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.71 Total: -23.95 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.70 Total: -12.82 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.61 -6.23 -35.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.386 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds