Wall clock time and date at job start Mon Mar 30 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52989 * 109.47473 * 2 1 4 4 H 1.09004 * 109.47149 * 305.62884 * 3 2 1 5 5 C 1.50701 * 109.47219 * 65.63010 * 3 2 1 6 6 H 1.07997 * 120.00143 * 28.16167 * 5 3 2 7 7 C 1.37880 * 120.00058 * 208.16810 * 5 3 2 8 8 N 1.31512 * 119.99903 * 6.19424 * 7 5 3 9 9 Si 1.86804 * 119.99958 * 186.19979 * 7 5 3 10 10 H 1.48501 * 109.47150 * 89.99794 * 9 7 5 11 11 H 1.48501 * 109.47028 * 209.99986 * 9 7 5 12 12 H 1.48504 * 109.46764 * 329.99383 * 9 7 5 13 13 C 1.50699 * 109.47621 * 185.63081 * 3 2 1 14 14 C 1.38251 * 119.92444 * 300.00194 * 13 3 2 15 15 C 1.38242 * 120.14763 * 180.02562 * 14 13 3 16 16 C 1.38565 * 119.99943 * 359.97438 * 15 14 13 17 17 O 1.35991 * 120.07481 * 179.97438 * 16 15 14 18 18 C 1.42901 * 116.99695 * 0.02562 * 17 16 15 19 19 C 1.39156 * 119.85352 * 359.97438 * 16 15 14 20 20 O 1.35993 * 120.07292 * 180.02562 * 19 16 15 21 21 C 1.42901 * 116.99670 * 180.02562 * 20 19 16 22 22 C 1.38238 * 119.93007 * 120.24999 * 13 3 2 23 23 H 1.08997 * 109.47395 * 294.08739 * 1 2 3 24 24 H 1.08996 * 109.47201 * 54.08662 * 1 2 3 25 25 H 1.09005 * 109.47806 * 174.08845 * 1 2 3 26 26 H 1.09002 * 109.47061 * 239.99525 * 2 1 3 27 27 H 1.09006 * 109.46950 * 120.00389 * 2 1 3 28 28 H 0.97007 * 119.99953 * 180.02562 * 8 7 5 29 29 H 1.08004 * 119.92680 * 359.97438 * 14 13 3 30 30 H 1.07997 * 120.00023 * 179.97438 * 15 14 13 31 31 H 1.09002 * 109.47018 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47931 * 300.00308 * 18 17 16 33 33 H 1.09000 * 109.46910 * 60.00522 * 18 17 16 34 34 H 1.09004 * 109.46547 * 180.02562 * 21 20 19 35 35 H 1.08993 * 109.47622 * 60.00298 * 21 20 19 36 36 H 1.09003 * 109.47079 * 299.99736 * 21 20 19 37 37 H 1.08002 * 120.00095 * 0.02562 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5967 1.9845 -0.8353 5 6 1.6548 2.1114 1.2942 6 1 1.5297 1.5220 2.1905 7 6 1.4618 3.4761 1.3341 8 7 1.4938 4.1774 0.2220 9 14 1.1552 4.3287 2.9676 10 1 2.4519 4.7448 3.5599 11 1 0.3040 5.5258 2.7491 12 1 0.4659 3.3934 3.8924 13 6 3.5406 1.4447 -0.1394 14 6 4.3224 0.8130 0.8098 15 6 5.6993 0.8127 0.6868 16 6 6.2988 1.4461 -0.3900 17 8 7.6532 1.4472 -0.5123 18 6 8.3970 0.7754 0.5062 19 6 5.5118 2.0810 -1.3460 20 8 6.0954 2.7035 -2.4049 21 6 5.2253 3.3348 -3.3465 22 6 4.1325 2.0828 -1.2134 23 1 -0.3634 0.4194 0.9381 24 1 -0.3633 0.6028 -0.8323 25 1 -0.3635 -1.0222 -0.1058 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.3584 5.1376 0.2501 29 1 3.8564 0.3193 1.6499 30 1 6.3077 0.3189 1.4299 31 1 9.4623 0.8521 0.2885 32 1 8.1898 1.2366 1.4718 33 1 8.1065 -0.2748 0.5354 34 1 5.8179 3.7916 -4.1392 35 1 4.6395 4.1029 -2.8417 36 1 4.5550 2.5909 -3.7771 37 1 3.5197 2.5794 -1.9512 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084400313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:16 Heat of formation + Delta-G solvation = -81.513138 kcal Electronic energy + Delta-G solvation = -18675.968572 eV Core-core repulsion = 15804.005226 eV Total energy + Delta-G solvation = -2871.963346 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35491 -39.26160 -38.49768 -35.87422 -33.74762 -31.28018 -31.07442 -28.85024 -28.01512 -27.34195 -25.38813 -23.22167 -22.56117 -21.20201 -19.27490 -18.61434 -17.66707 -17.24357 -16.89945 -16.47883 -16.06015 -15.55306 -15.42652 -15.20385 -15.07162 -14.44006 -13.98726 -13.47933 -13.44762 -13.11175 -12.89160 -12.84687 -12.80009 -12.41171 -12.25162 -12.04765 -12.00307 -11.94335 -11.71087 -11.42863 -10.95215 -10.83492 -10.50462 -9.42886 -8.52597 -8.07535 -6.14734 0.54938 0.73158 1.40113 1.42717 1.50065 2.43662 2.46506 2.51044 2.99262 3.25447 4.00965 4.18781 4.26003 4.38214 4.42489 4.45658 4.47178 4.54538 4.61011 4.66210 4.71514 4.76667 4.78909 4.83708 4.95944 5.19474 5.28195 5.43377 5.45582 5.60282 5.64919 5.76304 5.82126 5.98980 6.14347 6.21739 6.43747 6.77045 6.97572 7.49484 8.98730 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.007273 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.199267 B = 3848.689173 C = 3897.905606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C 0.067 3.933 4 H 0.026 0.974 5 C -0.502 4.502 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.940 3.060 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.263 1.263 13 C -0.038 4.038 14 C -0.122 4.122 15 C -0.167 4.167 16 C 0.056 3.944 17 O -0.334 6.334 18 C 0.020 3.980 19 C 0.076 3.924 20 O -0.329 6.329 21 C 0.026 3.974 22 C -0.180 4.180 23 H 0.045 0.955 24 H 0.034 0.966 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.258 0.742 29 H 0.128 0.872 30 H 0.158 0.842 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.127 0.873 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.228 -6.538 -1.548 10.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.139 4.139 3 C 0.048 3.952 4 H 0.044 0.956 5 C -0.540 4.540 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.766 3.234 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.187 1.187 13 C -0.039 4.039 14 C -0.140 4.140 15 C -0.185 4.185 16 C 0.012 3.988 17 O -0.249 6.249 18 C -0.075 4.075 19 C 0.031 3.969 20 O -0.244 6.244 21 C -0.069 4.069 22 C -0.199 4.199 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.146 0.854 30 H 0.175 0.825 31 H 0.137 0.863 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.512 -6.256 -1.808 10.717 hybrid contribution -0.608 1.013 0.832 1.445 sum 7.904 -5.243 -0.975 9.535 Atomic orbital electron populations 1.21541 0.95780 1.00202 1.01083 1.21474 0.96144 0.96480 0.99835 1.17957 0.87011 0.93134 0.97090 0.95555 1.21247 1.45208 0.92145 0.95376 0.92500 1.25637 0.95243 0.98644 0.98594 1.70040 1.51065 1.06812 1.27643 0.85829 0.77760 0.78383 0.81379 1.20972 1.21394 1.18721 1.20502 0.98719 0.92957 0.91737 1.20812 0.92525 1.01375 0.99293 1.21225 0.95704 1.03466 0.98136 1.18221 0.82933 1.02039 0.95637 1.86065 1.14472 1.74234 1.50122 1.23285 0.96740 0.96948 0.90491 1.18473 0.90656 0.98252 0.89542 1.86025 1.36411 1.68207 1.33751 1.23187 0.95464 0.96829 0.91409 1.21016 0.91840 1.05179 1.01826 0.93566 0.94634 0.91973 0.93736 0.92670 0.93345 0.85433 0.82502 0.86297 0.92430 0.91708 0.85519 0.93864 0.92461 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.64 71.98 0.69 -4.09 16 2 C -0.10 -4.06 5.11 30.59 0.16 -3.91 16 3 C 0.07 3.21 2.01 -12.29 -0.02 3.19 16 4 H 0.03 1.43 7.16 -2.38 -0.02 1.41 16 5 C -0.50 -26.18 7.04 25.60 0.18 -26.00 16 6 H 0.06 2.90 7.82 -2.91 -0.02 2.88 16 7 C 0.02 0.97 5.45 84.66 0.46 1.43 16 8 N -0.92 -52.57 12.87 21.45 0.28 -52.30 16 9 Si 0.94 43.35 29.54 68.60 2.03 45.38 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 13 C -0.04 -1.75 4.77 -19.86 -0.09 -1.84 16 14 C -0.12 -4.94 8.86 22.27 0.20 -4.74 16 15 C -0.17 -5.97 9.04 22.35 0.20 -5.77 16 16 C 0.06 2.20 6.70 22.57 0.15 2.35 16 17 O -0.33 -11.60 10.28 -79.59 -0.82 -12.42 16 18 C 0.02 0.44 9.81 113.37 1.11 1.56 16 19 C 0.08 3.21 6.70 22.57 0.15 3.36 16 20 O -0.33 -12.93 10.28 -79.61 -0.82 -13.75 16 21 C 0.03 0.79 9.81 113.37 1.11 1.91 16 22 C -0.18 -8.10 8.66 22.35 0.19 -7.90 16 23 H 0.05 1.82 7.59 -2.39 -0.02 1.80 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 2.09 7.58 -2.38 -0.02 2.07 16 28 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 29 H 0.13 4.86 7.63 -2.91 -0.02 4.83 16 30 H 0.16 4.33 6.30 -2.91 -0.02 4.31 16 31 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 33 H 0.06 1.26 7.66 -2.39 -0.02 1.24 16 34 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 35 H 0.04 1.44 7.65 -2.39 -0.02 1.42 16 36 H 0.06 1.67 7.68 -2.39 -0.02 1.65 16 37 H 0.12 5.44 6.18 -2.91 -0.02 5.42 16 Total: -1.00 -64.09 307.84 6.20 -57.88 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.05 Total: 15.65 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 4.49 Total: -40.46 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.28 Total: -52.30 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -1.64 Total: -26.17 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -64.09 6.20 -57.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084400313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.629 kcal (2) G-P(sol) polarization free energy of solvation -64.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds